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6,335 results for “direct”
Yeast 1-hybrid screens for upstream regulators of A. thaliana AGO1, AGO7, and AGO10: ranked tables of candidate direct upstream TFs
<p>This Excel file supplements a paper by Hoyer et al. (2019): <a href="https://doi.org/10.1002/pld3.102">https://doi.org/10.1002/pld3.102</a></p> <p>The file includes lists of TFs from twelve automated Y1H screens, for user convenience. The first sheet describes the columns. A separate Zenodo record (<a href="https://doi.org/10.5281/zenodo.1345229">1345229</a>) includes the raw data and code showing how the data were processed to generate these twelve tables.</p>
Research data supporting "Residue-Specific Solvation Directed Thermodynamic and Kinetic Control over Peptide Self-Assembly with 1D/2D Structure Selection"
<p>Experimental research raw data supporting the publication by Lin, Y. et al, 2019, "Residue-Specific Solvation Directed Thermodynamic and Kinetic Control over Peptide Self-Assembly with 1D/2D Structure Selection", ACS Nano. DOI: 10.1021/acsnano.8b08117.</p> <p>Molecular simulation data is available upon reasonable request from irene.yarovsky@rmit.edu.au.</p>
Supplemental Figures S1-S8: Direct CD137 costimulation of CD8 T cells promotes retention and innate-like function within nascent atherogenic foci
<p>Supplemental Figures and Table S1-S8 for "Direct CD137 costimulation of CD8 T cells promotes retention and innate-like function within nascent atherogenic foci" H-00088-2019, to the American Journal of Physiology-Heart and Circulatory Physiology.</p>
Online Resources Chapter 3 - Decomposition of standing litter biomass in newly constructed wetlands associated with direct effects of sediment and water characteristics and the composition and activity of the decomposer community using Phragmites australis as a single standard substrate
<p>Online Resources to Chapter 3 "Decomposition of standing litter biomass in newly constructed wetlands associated with direct effects of sediment and water characteristics and the composition and activity of the decomposer community using Phragmites australis as a single standard substrate" of PhD thesis from Ciska Overbeek, "Peat formation on a former landfill - Production and decomposition of aquatic pioneer vegetation". </p> <p>Published by Overbeek et al in 2019 in Wetlands 39(1): 113-125. https://doi.org/10.1007/s13157-018-1081-y. </p>
New Zealand native forest plant cover data for Popovic et al. MEE (2019), Untangling direct species associations from indirect mediator species effects with graphical models.
<p>Forest cover measurements were collected at 1246 native forest sites that form part of a network of permanent 20 x 20 m plots spread throughout New Zealand. A total of 1831 plant species were present in these plots, with the most common being herbs, graminoids, ferns, shrubs and trees. Plant cover (in ordinal categories) was assessed for each species in several tiers at different heights. The cover data we analysed (<em>NZ_native_forest_cover.csv) </em>were the maximum cover recorded over all the tiers at the 964 sites identified as native forests, containing 1311 species with at least one presence. <em>NZ_native_forest_species.csv</em> contains species data including species name, exotic/native, and plant type (tree, shrub, etc.), corresponding to the plant species in the columns of <em>NZ_native_forest_cover.csv</em>.</p> <p>We acknowledge the use of data drawn from the Natural Forest plot data collected between January 2002 and March 2007 by the LUCAS programme for the Ministry for the Environment, New Zealand.</p> <p> </p>
Supplement (interactive Excel reporting tool) to MAGIC Deliverable 5.6 'Report on Narratives behind Directives Protecting the Environment'
<p>Interactive Excel data sheets for four case studies (the Netherlands, France, Spain and European Union) illustrating the consequences of full and partial internalization of agricultural production (based on current levels of import and export) for biodiversity loss. These interactive Excel reporting tools are a supplement to: </p> <p>De Olde EM, Ripoll Bosch R, Kok A, De Boer IJM, Giampietro M and Guimaraes Pereira A (2019). Report on Narratives behind Directives Protecting the Environment (Revision). MAGIC (H2020–GA 689669) Project Deliverable 5.6. First version 30 November 2018, revision 30 June 2019. Available online: <a href="https://magic-nexus.eu/documents/d56-report-narratives-behind-directives-protecting-environment">https://magic-nexus.eu/documents/d56-report-narratives-behind-directives-protecting-environment</a> </p> <p> </p>
Direct evidence of the pitch angle scattering of relativistic electrons induced by EMIC waves
<p>High rate MagEIS data for the submitted paper "Direct evidence of the pitch angle scattering of relativistic electrons induced by EMIC waves"</p>
i-Pr2NMgCl·LiCl Enables the Synthesis of Ketones by Direct Addition of Grignard Reagents to Carboxylate Anions - NMR and HRMS data
<p>Primary raw data for the article published in Organic Letters DOI: 10.1021/acs.orglett.9b02899</p>
The dynamics of bi-directional exchange flows: implication for morphodynamic change within estuaries and sea straits
<p>Environmental and geophysical flows, including dense bottom gravity currents in the ocean and buoyancy-driven exchange flows in marginal seas,<br> are strongly controlled by topographic features.<br> These are known to exert significant influence on both internal mixing and secondary circulations generated by these flows.<br> In such cases, uni-directional or bi-directional exchange flows develop when horizontal density differences<br> and/or pressure gradients are present between adjacent water bodies connected by a submerged channel.<br> The flow dynamics of the dense lower layer depend primarily on the volumetric flux and channel cross-sectional shape,<br> while the stratified interfacial flow mixing characteristics, leading to fluid entrainment/detrainment,<br> are also dependent on the buoyancy flux and motion within the upper (lower density) water mass.<br> For submerged channels that are relatively wide compared to the internal Rossby radius of deformation,<br> Earth rotation effects introduce geostrophic adjustment of these internal fluid motions,<br> which can suppress turbulent mixing generated at the interface and result in the development of Ekman layers that induce secondary,<br> cross-channel circulations, even within straight channels.<br> Moreover, recent studies of dense, gravity currents generated in rotating and non-rotating systems,<br> respectively, indicated that the V-shaped channel topography had a strong influence on both flow distribution<br> and associated interfacial mixing characteristics along the channel.<br> However, such topographic controls on the interfacial mixing and secondary circulations generated by bi-directional exchange flows<br> are not yet fully understood and remain to be investigated thoroughly in the laboratory.<br> Also the effect of mobile bed for bi-directional exchange flows generated in deformable channels along with the physical interactions<br> between the lower dense water flow and the erodible bed sediments<br> will have a strong influence in (re-)shaping the overall channel bed topography (i.e. bed morphodynamics).<br> Consequently, the resulting temporal changes in cross-sectional channel bathymetry (i.e. through erosion and deposition processes)<br> would also be expected to have associated feedbacks on transverse asymmetries in the bi-directional exchange flow structure,<br> as well as on the internal flow stability.</p>
Reconstructing 10-km-resolution direct normal irradiance dataset through a hybrid algorithm
<p>The 41-year (1982-2022) daily DNI dataset (CHDNI) reconstructed in this study has been uploaded, and stored in netcdf format. The one-year dataset comprises daily DNI estimates for either 365 or 366 days, with individual data files separately organized by year. Each daily file is stored in mat format and labeled as "pred_xxxxxyymm," where ‘xxxx' denotes the year, ‘yy' represents the month, and ‘mm' stands for the day. The geographical scope of CHDNI dataset spans from 3°N to 54°N in latitude and from 72°E to 136°E in longitude. The mat matrix, encapsulating the data, is configured with dimensions of 361 rows and 641 columns, measured in W/m2.</p> <p>If you want to use the CHDNI dataset for related scientific research, please contact us (Email: WHU_wjy@whu.edu.cn).</p> <ul> <li>Wu J, Niu J, Qi Q, Gueymard CA, Wang L, Qin W, et al. Reconstructing 10-km-resolution direct normal irradiance dataset through a hybrid algorithm. Renewable and Sustainable Energy Reviews 2024; 204: 114805.</li> </ul>
Figure 8 in Paracossulus thrips (Hübner, 1818) (Cossidae) and Lignyoptera fumidaria (Hübner, 1825) (Geometridae) - two Lepidoptera genera new for Serbia with a review of the distribution of these two Habitats Directive species in the Balkan Peninsula
Figure 8. Habitat of Lignyoptera fumidaria at Vidlič Mt., above Krupac Village, 525 m.
Figure 3 in Paracossulus thrips (Hübner, 1818) (Cossidae) and Lignyoptera fumidaria (Hübner, 1825) (Geometridae) - two Lepidoptera genera new for Serbia with a review of the distribution of these two Habitats Directive species in the Balkan Peninsula
Figure 3. Habitat of Paracossulus thrips at Chepan Hill, below Petrovski Krust Summit, 1167 m.
Figure 2 in Paracossulus thrips (Hübner, 1818) (Cossidae) and Lignyoptera fumidaria (Hübner, 1825) (Geometridae) - two Lepidoptera genera new for Serbia with a review of the distribution of these two Habitats Directive species in the Balkan Peninsula
Figure 2. Paracossulus thrips male, between Ponor and Bezden Villages, 912 m.
Figure 1 in Paracossulus thrips (Hübner, 1818) (Cossidae) and Lignyoptera fumidaria (Hübner, 1825) (Geometridae) - two Lepidoptera genera new for Serbia with a review of the distribution of these two Habitats Directive species in the Balkan Peninsula
Figure 1. Habitat of Paracossulus thrips between Ponor and Bezden Villages, 912 m.
Figure 5 in Paracossulus thrips (Hübner, 1818) (Cossidae) and Lignyoptera fumidaria (Hübner, 1825) (Geometridae) - two Lepidoptera genera new for Serbia with a review of the distribution of these two Habitats Directive species in the Balkan Peninsula
Figure 5. Habitat of Paracossulus thrips at Vidlič Mt., above Gulenovci Village, 967 m.
Figure 4 in Paracossulus thrips (Hübner, 1818) (Cossidae) and Lignyoptera fumidaria (Hübner, 1825) (Geometridae) - two Lepidoptera genera new for Serbia with a review of the distribution of these two Habitats Directive species in the Balkan Peninsula
Figure 4. Paracossulus thrips male at Chepan Hill, below Petrovski Krust Summit, 1167 m.
X-ray Emission of Nearby Low-mass and Sun-like Stars with Directly Imageable Habitable Zones: X-ray Spectra and Light Curves
<p>This repository contains the X-ray light curves extracted from the XMM-Newton and Chandra observations and the best-fit X-ray spectral models (with and without emission lines) from all stars detected at high significance in Binder et al. (2024), ApJS, ..., ...</p> <p>Description of Files:</p> <h3>LightCurves.zip</h3> <p>Summary: Light curve files (327) for all stars detected at high significance; in FITS (BinTableHDU) format with 7-14 extensions. The following types of data are included:</p> <ul> <li>"*_source.lc" : EPIC/PN source light curves of stars detected with more than ~500 net counts in an XMM-Newton observation</li> <li>"*_bkg.lc" : EPIC/PN background light curves of stars detected with more than ~500 net counts in an XMM-Newton observation</li> <li>"*_sub_lc.fits" : Background-subtracted light curves of stars detected with more than ~50 net counts in a Chandra observation</li> </ul> <h3>Spectra.zip</h3> <p>Summary: Spectra (152) for all stars detected at high significance (with >500 net counts in Chandra observations and >2000 net counts in XMM-Newton observations) in ASCII (ECSV format). We provide both the continuum spectra and spectra containing line emission. For stars that exhibit X-ray count rate variability, we provide spectra for specific variability types (see Binder et al. 2024 for details). The following types of data are included:</p> <ul> <li>"*_continuum.dat" : Continuum-only best-fit spectra</li> <li>"*_lines.dat" : Best-fit spectra containing line emission</li> </ul>
Direct evidence for nest predation by the edible dormouse (Glis glis, Rodentia) in open-cup nesting songbirds
<p>Here we provide the first direct evidence, with the use of time-lapse video surveillance, that edible dormouse (Glis glis), depredated eggs and nestlings of two open-nesting passerine species, the Eurasian blackcap (Sylvia atricapilla), and the common blackbird (Turdus merula) in a central European woodland. In the blackcap, we detected three predation events. In the first two cases, edible dormouse flushed away incubating/brooding females and preyed upon either the eggs or the nestlings. The third case documents egg predation on an abandoned nest. The fourth case (two files and b) documents an attempt to forage on eggs in an abandoned nest of song thrush (Turdus philomelos). Note that an Apodemus mouse brought an egg into this nest before. In the blackbird (files Case 5a,b), we document a single case of dormouse attacking a brooding female. The female and nestlings managed to escape. Our data bring another piece of evidence for dormice predation on Passerine birds and they highlight the value of direct nest surveillance for documenting rodent predatory impact on birds.</p> <p> </p> <p>File names match the order of the cases as desribed in the paper published in Journal of Vertebrate Biology <a href="https://doi.org/10.25225/jvb.24090">https://doi.org/10.25225/jvb.24090</a>. Files labelled as "edited" contain scenes with the predations events only.</p>
Spectral data for direct detection and quantification of phycocyanin in sediments by hyperspectral imaging: Standard calibration
<p>Accompanying data to publication: <strong>Direct detection and quantification of phycocyanin in sediments by hyperspectral imaging</strong></p> <p>Hyperspectral data with all their processing steps - normalization, ROI, subsets, masking - resulting in RABD indices of Chlorophyll a and Phycocyanin pigments from spiking experiments on sediments.</p>
Spectral data for direct detection and quantification of phycocyanin in sediments by hyperspectral imaging: Spiking Session 1 - Phycocyanin & Chlorophyll a
<p>Accompanying data to publication: <strong>Direct detection and quantification of phycocyanin in sediments by hyperspectral imaging</strong></p> <p>Hyperspectral data with all their processing steps - normalization, ROI, subsets, masking - resulting in RABD indices of Chlorophyll a and Phycocyanin pigments from spiking experiments on sediments.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.