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Wilcoxon Rank Sum Test and Keyphrase Extraction Data Cited in "What Everyone Says: Public Perceptions of the Humanities in the Media"
<p>This repository contains Wilcoxon rank sum test and keyphrase extraction data cited in the WhatEvery1Says (WE1S) Project's article "What Everyone Says: Public Perceptions of the Humanities in the Media". The organization of the materials is discussed below.</p> <p><strong>Wilcoxon Rank Sum Test</strong></p> <p>All data and results from Wilcoxon rank sum testing can be found in the <code>wilcoxon-tests</code> folder of the extracted zip file <code>we1s_about_the_humanities.zip</code>. The Wilcoxon rank sum test identifies specific words that appear significantly more in one group of documents as compared to another, thus providing researchers with an understanding of what words are “distinctive” to each group. Further information on WE1S's use of Wilcoxon rank sum testing can be found at <a href="https://we1s.ucsb.edu/wp-content/uploads/M-15-Wilcoxon-Test.pdf">https://we1s.ucsb.edu/wp-content/uploads/M-15-Wilcoxon-Test.pdf</a>.</p> <p>Each subdirectory in the <code>wilcoxon-test</code> folder contains the data and results of a particular comparison experiment based on a metadata category such as whether the data contained articles published by public or private institutions. Each data file is a <code>.txt</code> file representing a sample of the overall data from the collection. The <code>README</code> file provides information on the collection used, the sample size, and the nature of the comparison. The results for the test are in a file called <code>results.csv</code>.</p> <p>The <code>results.csv</code> file for each test includes a row for each term included in the test. Each row displays the term, the term's raw count in each category compared (count 1 and count 2), the difference between the 2 counts (count 1 minus count 2), the percentage change in the counts, the Wilcoxon statistic, and the Wilcoxon p-value. Sorting the csv by the Wilcoxon stat from greatest to least will cause the terms most strongly associated with category 1 to come to the top (category 1 is the category listed first in the title field of the README.md file for each test), while sorting it by the Wilcoxon stat from least to greatest will cause the terms most strongly associated with category 2 to come to the top (category 2 is the category listed second). The p-value column provides you with information about how confident you can be about each comparison's significance.</p> <p><strong>Keyphrase Extraction</strong></p> <p>All data and results from Wilcoxon rank sum testing can be found in the <code>keyphrase-extraction</code> folder of the extracted zip file <code>we1s_about_the_humanities.zip</code>. Keyphrase extraction generates a list of the most significant words or phrases (1-6 words long) within individual documents. WE1S takes the top ten keyphrases in each document and ranks them according to their frequency across the collection. WE1S uses the SGRank algorithm for keyphrase extraction, and because this algorithm is computationally intensive, WE1S limits keyphrases to lemmatized nouns and proper nouns within a window of 70 words to either side of candidate keyphrases. Further information on WE1S's use of keyphrase extaction can be found at <a href="https://we1s.ucsb.edu/wp-content/uploads/M-14-Keyphrase-Extraction.pdf">https://we1s.ucsb.edu/wp-content/uploads/M-14-Keyphrase-Extraction.pdf</a>.</p> <p>Each subdirectory in the <code>keyphrase-extraction</code> folder contains the data and results of keyphrase extraction on a particular collection. Details of the collection and resulting files can be found in each subdirectory. Each list of keyphrases is in a file called <code>SGRank.csv</code>, which lists the keyphrases and their number of occurrences in the collection. The article additionally cites keyphrases that are shared with the terms in the public topic model produced by Andrew Goldstone and Ted Underwood, “The Quiet Transformations of Literary Studies: What Thirteen Thousand Scholars Could Tell Us,” <em>New Literary History</em> 45, no. 3 (2014): 359–84, <a href="https://doi.org/10.1353/nlh.2014.0025">https://doi.org/10.1353/nlh.2014.0025</a>. The list of terms is derived from the public visualization at <a href="https://www.sas.rutgers.edu/virtual/ag978/quiet/#/words">https://www.sas.rutgers.edu/virtual/ag978/quiet/#/words</a>. Keyphrases extracted from WE1S data were split into single-word terms and compared with the list of vocabulary in Goldstone and Underwood's word list (<code>quiet_transformations_wordlist.txt</code>) to compile lists of shared vocabulary. These lists are given in files called <code>shared_terms.txt</code>.</p> <p>Note that keyphrases were extracted for corpora produced using the Python <a href="https://textacy.readthedocs.io/en/latest/index.html">Textacy</a> library. Because these corpora contain the full text of articles with intellectual property restrictions they cannot be reproduced here.</p>
Integration-based Extraction and Visualization of Jet Stream Cores - Supplemental Video
<p>Supplemental video for the publication "Integration-based Extraction and Visualization of Jet Stream Cores", which extracts jet stream core lines from ERA5 data using a predictor corrector algorithm.</p>
Dataset: Improving the prediction of fertilizer phosphorus availability to plants with simple, but non-standardized extraction techniques
<p>Dataset: Improving the prediction of fertilizer phosphorus availability to plants with simple, but non-standardized extraction techniques</p>
rime fraction training data set extracted from BAECC
<p>training data set used in Vogl et al. (https://amt.copernicus.org/preprints/amt-2021-137/) to derive rime mass fraction from Doppler cloud radar observations. Extracted from the BAECC data set.</p> <p>rime mass fraction retrieved from PIP data</p> <p>cloud radar observations at Ka- and W-band (ARM KAZR and MWACR)</p> <p>attenuation estimated using the Passive and Active Microwave Remote Sensing Tool (PAMTRA)</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 500m Y13 & Y14
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 500m particles releases for the years 2008 (Y13) and 2009 (Y14).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 500m Y17 & Y18
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 500m particles releases for the years 2012 (Y17) and 2013 (Y18).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 500m Y7 & Y8
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 500m particles releases for the years 2002 (Y7) and 2003 (Y8).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 2000m Y17 & Y18
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 2000m particles releases for the years 2012 (Y17) and 2013 (Y18).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 500m Y3 & Y4
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 500m particles releases for the years 1998 (Y3) and 1999 (Y4).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 2000m Y15 & Y16
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 2000m particles releases for the years 2010 (Y15) and 2011 (Y16).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 2000m Y13 & Y14
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 2000m particles releases for the years 2008 (Y13) and 2009 (Y14).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 500m Y1 & Y2
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 500m particles releases for the years 1996 (Y1) and 1997 (Y2).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 2000m Y9 & Y10
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 2000m particles releases for the years 2004 (Y9) and 2005 (Y10).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 2000m Y7 & Y8
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 2000m particles releases for the years 2002 (Y7) and 2003 (Y8).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 2000m Y11 & Y12
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 2000m particles releases for the years 2006 (Y11) and 2007 (Y12).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 2000m Y3 & Y4
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 2000m particles releases for the years 1998 (Y3) and 1999 (Y4).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 500m Y11 & Y12
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 500m particles releases for the years 2006 (Y11) and 2007 (Y12).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 1000m Y1 & Y2
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 1000m particles releases for the years 1996 (Y1) and 1997 (Y2).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 1000m Y13 & Y14
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 1000m particles releases for the years 2008 (Y13) and 2009 (Y14).</p>
Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 1000m Y15 & Y16
<p>A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 1000m particles releases for the years 2010 (Y15) and 2011 (Y16).</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.