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Data from: Identifying future zoonotic disease threats: where are the gaps in our understanding of primate infectious diseases?
Background and objectives: Emerging infectious diseases often originate in wildlife, making it important to identify infectious agents in wild populations. It is widely acknowledged that wild animals are incompletely sampled for infectious agents, especially in developing countries, but it is unclear how much more sampling is needed, and where that effort should focus in terms of host species and geographic locations. Here we identify these gaps in primate parasites, many of which have already emerged as threats to human health. Methodology: We obtained primate host-parasite records and other variables from existing databases. We then investigated sampling effort within primates relative to their geographic range size, and within countries relative to their primate species richness. We used generalized linear models, controlling for phylogenetic or spatial autocorrelation, to model variation in sampling effort across primates and countries. Finally, we used species richness estimators to extrapolate parasite species richness. Results: We found uneven sampling effort within all primate groups and continents. Sampling effort among primates was influenced by their geographic range size and substrate use, with terrestrial species receiving more sampling. Our parasite species richness estimates suggested that, among the best-sampled primates and countries, almost half of primate parasites remain to be sampled; for most primate hosts, the situation is much worse. Conclusions and implications: Sampling effort for primate parasites is uneven and low. The sobering message is that we know little about even the best studied primates, and even less regarding the spatial and temporal distribution of parasitism within species.
FIGURE 5. A in Amphimedon species (Porifera: Niphatidae) from the Gulf of Aqaba, Northern Red Sea: Filling the gaps in the distribution of a common pantropical genus
FIGURE 5. A. Amphimedon hamadai sp.nov., habit (scale bar = 1 cm); B. Amphimedon hamadai sp.nov., peripheral skeleton (scale bar = 500 µm); C. Amphimedon hamadai sp.nov., choanosomal skeleton showing the anisotropic arrangement of the fibres (scale bar = 100 µm).
FIGURE 4. A in Amphimedon species (Porifera: Niphatidae) from the Gulf of Aqaba, Northern Red Sea: Filling the gaps in the distribution of a common pantropical genus
FIGURE 4. A. Amphimedon jalae sp.nov. habit (scale bar = 1 cm); B. Amphimedon jalae sp.nov., ectosomal skeleton showing the threedimensional network of spicule tracts (scale bar = 100 µm); C. Amphimedon jalae sp.nov., cross section of choanosomal skeleton, (scale bar = 100 µm).
FIGURE 3. A in Amphimedon species (Porifera: Niphatidae) from the Gulf of Aqaba, Northern Red Sea: Filling the gaps in the distribution of a common pantropical genus
FIGURE 3. A. Amphimedon dinae, habit (scale bar = 1 cm); B. Amphimedon dinae sp.nov., ectosomal skeleton (scale bar = 500 µm); C. Amphimedon dinae sp.nov., choanosomal skeleton showing the thin oxeas embedded in the fibres (scale bar =100 µm).
FIGURE 2. A in Amphimedon species (Porifera: Niphatidae) from the Gulf of Aqaba, Northern Red Sea: Filling the gaps in the distribution of a common pantropical genus
FIGURE 2. A. Amphimedon chloros Ilan et al., 2004, habit (scale bar = 1 cm); B. Amphimedon chloros Ilan et al., 2004, structure of the ectosomal skeleton showing the threedimensional network of spicule tracts (scale bar = 0.5 mm); C–F. SEMimages of oxeas of Amphimedon chloros (C), A.dinae sp.nov.(D), A.jalae sp.nov.(E) and A.hamadai sp.nov.(F) (scale bars = 10 µm).
FIGURE 1 in Amphimedon species (Porifera: Niphatidae) from the Gulf of Aqaba, Northern Red Sea: Filling the gaps in the distribution of a common pantropical genus
FIGURE 1. Map of the Northern Red Sea showing the localities where the described sponges were observed and collected.
Figure 2. from Bridging the distributional gap of Tylorida striata (Thorell, 1877) and new synonymy (Araneae: Tetragnathidae) - Biodiversity Data Journal 3: e4878 (26 March 2015) https://doi.org/10.3897/BDJ.3.e4878
Figure 2. - Tyloridastriata, live female from India (BNHS Sp. 139).
PLoS_One_Gap_method
<p>XLS files containing threshold estimates and data underlying all 9 figures appearing in the manuscript<br> Fereczkowski, M., Jepsen, M. L., Dau, T., & MacDonald, E. N. (2017). Investigating time-efficiency of forward masking paradigms for estimating basilar membrane input-output characteristics. <em>PloS one</em>, <em>12</em>(3), e0174776.</p>
Two events that partially ruptured the residual shallow gaps of Mentawai patch, West Sumatra
<p>The slip distribution data of 20221118 Mw6.8 and 20230424 Mw7.0 earthquakes.</p>
Bias Corrected and Gap Filled Sentinel-1 and University of Arizona Snow Depth Data
Open the record for dataset details and reuse information.
FIGURE 4 in Leuconidae Sars, 1878 (Crustacea: Cumacea) from the southwestern Atlantic, filling the distribution gap along the Brazilian coast
FIGURE 4. Leucon (Alytoleucon) rhuanae sp. nov. Paratype (lost in the fire): Pereopods, pleopod and uropods; preparatory male, 4.1 mm, #HAB3 E10, MNRJ 28925.
FIGURE 3 in Leuconidae Sars, 1878 (Crustacea: Cumacea) from the southwestern Atlantic, filling the distribution gap along the Brazilian coast
FIGURE 3. Leucon (Alytoleucon) rhuanae sp. nov. Paratype (lost in the fire): habitus, antenna 1, mandible, maxilla 1–2 and maxillipeds; preparatory male, 4.1 mm, #HAB3 E10, MNRJ 28925. Holotype: antenna 1 flagellum (fl): mature male, 5.1 mm, #SANSED3 P03-R1 (0–2), MNRJ 30608.
FIGURE 8 in Leuconidae Sars, 1878 (Crustacea: Cumacea) from the southwestern Atlantic, filling the distribution gap along the Brazilian coast
FIGURE 8. Leucon (Macrauloleucon) watlingi sp. nov. Holotype: habitus without appendages and carapace and pereonite 1–2 with zoom; preparatory female, 3.6 mm, #SANSED7 D09-R1 (0–2), MNRJ 30544.
FIGURE 12 in Leuconidae Sars, 1878 (Crustacea: Cumacea) from the southwestern Atlantic, filling the distribution gap along the Brazilian coast
FIGURE 12. Eudorella helenae sp. nov. Paratype (Lost in the fire): carapace female, antenna 1–2, mandible, maxilla 1–2 and maxillipeds; mature female, 3.1 mm, #HAB11 A3, MNRJ 28957. Additional material (lost in the fire): Carapace preparatory male: 2.5 mm, #HAB11 A3, MNRJ 28958.
FIGURE 15 in Leuconidae Sars, 1878 (Crustacea: Cumacea) from the southwestern Atlantic, filling the distribution gap along the Brazilian coast
FIGURE 15. Gyneleucon tripedium sp. nov. Pereopods and uropods: mature male, 1.9 mm, #AMB14 F3, MNRJ 28968.
FIGURE 5 in Leuconidae Sars, 1878 (Crustacea: Cumacea) from the southwestern Atlantic, filling the distribution gap along the Brazilian coast
FIGURE 5. Leucon (Crymoleucon) pseudograndidentatus sp. nov. Holotype: habitus without appendages and carapace with zoom; mature female, 4.6 mm, #SANSED1 B8-R2 (0–2), MNRJ 30553.
FIGURE 7 in Leuconidae Sars, 1878 (Crustacea: Cumacea) from the southwestern Atlantic, filling the distribution gap along the Brazilian coast
FIGURE 7. Leucon (Crymoleucon) pseudograndidentatus sp. nov. Paratype (Lost in the fire): mature female, 5 mm, #HAB3 B08, MNRJ 28943. Pereopods and uropod.
FIGURE 2 in Leuconidae Sars, 1878 (Crustacea: Cumacea) from the southwestern Atlantic, filling the distribution gap along the Brazilian coast
FIGURE 2. Leucon (Alytoleucon) rhuanae sp. nov. Holotype: habitus without appendages; mature male, 5.1 mm, #SANSED3 P03-R1 (0–2), MNRJ 30608.
FIGURE 16 in Leuconidae Sars, 1878 (Crustacea: Cumacea) from the southwestern Atlantic, filling the distribution gap along the Brazilian coast
FIGURE 16. Bathymetric range of species of Leuconidae along the Brazilian coast (18° S–27° S) based on samples listed in Table 1.
FIGURE 1. Leuconidae holotypes. A in Leuconidae Sars, 1878 (Crustacea: Cumacea) from the southwestern Atlantic, filling the distribution gap along the Brazilian coast
FIGURE 1. Leuconidae holotypes. A—Leucon (Crymoleucon) pseudograndidentatus sp. nov. female 4.6 mm, #SANSED1 B8-R2 (0–2), MNRJ 30553. B—Leucon (Macrauloleucon) watlingi sp. nov. female, 3.6 mm, #SANSED7 D09-R1 (0–2), MNRJ 30544. C—Eudorella helenae sp. nov. female, 2.8 mm, #SANSED6 A03-R2 (500), MNRJ 30572. D—Leucon (Alytoleucon) rhuanae sp. nov. male (pereopod 1 broken), 5.1 mm, #SANSED3 P03-R1 (0–2), MNRJ 30608. Scales: 0.5 mm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.