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537
datasets available to search
ShareScore release 0.9.0
Dataset results
537 results for “genome structure”
Reprogramming of 3D genome structure underlying HSPC development in zebrafish [ATAC-seq]
GEO Series GSE262186. Danio rerio. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RNA surveillance controls 3D genome structure via stable cohesin chromosome interaction
GEO Series GSE85147. Schizosaccharomyces pombe; Saccharomyces cerevisiae. 120 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Structural and Genome-wide Analysis Support a Role for SETMAR in Transcriptional Regulation
GEO Series GSE103017. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Consticted migration is associated with stable 3D genome structure differences in cancer cells (Hi-C)
GEO Series GSE143676. Homo sapiens. 27 samples. Type: Other.
Role of Top1 and 3D Genome structure in SARS-CoV-2 infection [Hi-C]
GEO Series GSE162612. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genomic insight into the genetic structure and population history of Mongolians in Liaoning Province
<p>We collected a total of 38 peripheral blood samples from Mongolian individuals in Fuxin, Liaoning province, northeast China. All participants were inquired to be the self-identified indigenous Mongolian people as having at least three generations and had never intermarried with other ethnic groups. Verbal and written informed consent was obtained from all participants. We used the Illumina Chinese Genotyping Array (Affymetrix WeGene V3 Arrays) covering 717,228 single nucleotide polymorphisms (SNPs) to genotype targeted SNPs in Fuxin Mongolians.</p>
3D genomics analysis identifies enhancer hijacking caused by structural alterations and extrachromosomal circular DNA formation [RNA-Seq]
GEO Series GSE247056. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
The Role of BAZ2-dependent Chromatin Remodeling in Suppressing G4 DNA [HA] Structures and Associated Genomic Instability
GEO Series GSE285881. Homo sapiens. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Consticted migration is associated with stable 3D genome structure differences in cancer cells (ATAC-Seq)
GEO Series GSE143674. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Role of Top1 and Genome structure in SARS-CoV-2 infection
GEO Series GSE162619. Mesocricetus auratus; Homo sapiens. 39 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
GM12878 200kb resolution full diploid genome structures
<p>Population of 10000 full diploid genome structures of human lymphoblastoid GM12878 cell line, 200kb resolution, generated using the Integrated Genome Modeling (IGM) software developed in the Alber lab at UCLA</p> <p>HiC input file: <a href="https://zenodo.org/api/files/4402d8a1-1a01-46b7-905c-7fd07e3767c6/GM_HiC_input.hcs">GM_HiC_input.hcs</a></p> <p>Structure file: <a href="https://zenodo.org/api/files/4402d8a1-1a01-46b7-905c-7fd07e3767c6/GM12878_HiC_10kstructures.dcd">GM12878_HiC_10kstructures.dcd</a></p> <p>mmCIF format deposition file: <a href="https://zenodo.org/api/files/4402d8a1-1a01-46b7-905c-7fd07e3767c6/GM12878_HiC_IGM_model.cif">GM12878_HiC_IGM_model.cif</a></p>
Kids First: Whole Exome and Genome Sequencing in Structural Defects of The Neural Tube
Namespace hosted on the Kids First DRC FHIR services at fhir.kidsfirstdrc.org
Kids First: The genomic basis of structural birth defects associated with chromosome 18 copy number changes
Namespace hosted on the Kids First DRC FHIR services at fhir.kidsfirstdrc.org
Kids First: Genomic Diagnostics in Cornelia de Lange Syndrome, Related Diagnoses and Structural Birth Defects
Namespace hosted on the Kids First DRC FHIR services at fhir.kidsfirstdrc.org
Kids First: Genomic Etiologies of CHARGE Syndrome, Related Conditions and Structural Anomalies
Namespace hosted on the Kids First DRC FHIR services at fhir.kidsfirstdrc.org
Kids First: Whole Exome, Genome, and RNA Sequencing in Recessive Structural Brain Defects in Children
Namespace hosted on the Kids First DRC FHIR services at fhir.kidsfirstdrc.org
Kids First: Genomic Analysis of a Cohort with Infantile Hemangiomas Associated with Multi-organ Structural Birth Defects
Namespace hosted on the Kids First DRC FHIR services at fhir.kidsfirstdrc.org
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.