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1,751 results for “molecular phylogenetics”
Supplementary material 1 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 1 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 10 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Maximum likelihood phylogram inferred from psbA–rps19–trnH sequence data : Explanation note: ML bootstrap support is recorded along branches. No support is shown for branches with bootstrap support <50%.
Supplementary material 1 from: Fisher JR, Fisher DM, Skvarla MJ, Nelson WA, Dowling APG (2017) Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. ZooKeys 701: 1-496. https://doi.org/10.3897/zookeys.701.13261
Supplementary material 1 from: Fisher JR, Fisher DM, Skvarla MJ, Nelson WA, Dowling APG (2017) Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. ZooKeys 701: 1-496. https://doi.org/10.3897/zookeys.701.13261
Supplementary material 1 from: Pereira T, Reis A, Cardoso D, Cristiano M (2018) Molecular phylogenetic reconstruction and localization of the (TTAGG)n telomeric repeats in the chromosomes of Acromyrmex striatus (Roger, 1863) suggests a lower ancestral karyotype for leafcutter ants. Comparative Cytogenetics 12(1): 13-21. https://doi.org/10.3897/CompCytogen.v12i1.21799
Figure S1. Phylogenomic tree used to estimate the ancestral chromosome number. : Explanation note: Numbers at nodes represent the first and second most likely haploid chromosome number followed by posterior support values under Bayesian optimization and the ancestral haploid chromosome number with best likelihood under maximum likelihood optimization, as follows: [first haploid state (P.P.%)// second haploid state (P.P.%)// ML haploid state].
FIGURE 32. Leptalpheus sibo n in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 32. Leptalpheus sibo n. sp., paratype male (cl 7.4 mm), ULLZ 18219 [USNM 1705349], from Puerto Sandino, Nicaragua: a, major cheliped, lateral; b, same, chela, lateral; c, second pereopod, lateral; d, third pereopod, lateral; e, fourth pereopod, lateral; f, fifth pereopod, lateral; g, same, propodus and dactylus, lateral; h, second pleopod with appendix masculina and appendix interna, mesial.
FIGURE 27 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 27. Leptalpheus lirai Vera Caripe et al., 2021, ovigerous female (cl 11.3 mm), ULLZ 18233 [USNM 1706499], from Ft. Pierce, Florida, USA: a, habitus, lateral; b, frontal margin, dorsal; c, same, lateral; d, ventromesial carina of first article of antennular peduncle, lateral; e, antennular peduncle, ventral; f, same, first article, dorsal; g, antennal peduncle, dorsal; h, same, ventral; i, mandible, mesial; j, maxillule, lateral.
FIGURE 28 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 28. Leptalpheus lirai Vera Caripe et al., 2021, ovigerous female (cl 11.3 mm), ULLZ 18233 [USNM 1706499] (a–f, i, j), and male (cl 7.8), ULLZ 18234 [USNM 1706500] (g, h), both from Ft. Pierce, Florida, USA: a, maxilla, lateral; b, first maxilliped, lateral; c, second maxilliped, lateral; d, third maxilliped, lateral; e, major cheliped, lateral; f, major chela, lateral; g, same, lateral; h, same, mesial; i, minor cheliped, lateral; j, minor chela, mesial.
FIGURE 25 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 25. Color patterns of Leptalpheus degravei n. sp. and Leptalpheus forceps Williams, 1965. Leptalpheus degravei n. sp.: a, paratype male (cl 3.6 mm), ULLZ 18511 [USNM 1705361], from Bocas del Toro, Panama, dorsal; b, same, lateral; c, holotype male (cl 5.1 mm), ULLZ 18510 [USNM 1705360], from Bocas del Toro, Panama, dorsal; d, same, lateral; e, paratype female (cl 3.7 mm), ULLZ 18506 [USNM 1705356], from Bocas del Toro, Panama, dorsal; f, same, lateral; g, paratype ovigerous female (cl 4.7 mm), ULLZ 18512 [USNM 1705362], from Bocas del Toro, Panama, lateral. Leptalpheus forceps: h, ovigerous female (cl 5.9 mm), ULLZ 5818 [USNM 1541154], from Ft. Pierce, Florida, USA, lateral. Photographs by the first author (a–g) and third author (h).
FIGURE 31. Leptalpheus sibo n in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 31. Leptalpheus sibo n. sp., paratype male (cl 7.4 mm), ULLZ 18219 [USNM 1705349], from Puerto Sandino, Nicaragua: a, frontal margin, dorsal; b, same, lateral; c, telson, dorsal; d, ventromesial carina of first article of antennular peduncle, lateral; e, mandible, mesial; f, maxillule, lateral; g, maxilla, lateral; h, first maxilliped, lateral; i, second maxilliped, lateral; j, third maxilliped, lateral; k, uropod, dorsal.
FIGURE 26 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 26. Color patterns of Leptalpheus felderi Anker, Vera Caripe & Lira, 2006 from Virginia, USA: a, male (cl 8.5 mm), UF 48038, from Wachaprague, dorsal; b, same, lateral; c, female (cl 8.0 mm) USNM 1499342, from Bradford Bay, dorsal; d, same, lateral. Photographs by Amanda Bemis.
FIGURE 24. Leptalpheus degravei n in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 24. Leptalpheus degravei n. sp., holotype male (cl 5.1 mm), ULLZ 18510 [USNM 1705360], from Bocas del Toro, Panama: a, major cheliped, dorsolateral; b, same, ventromesial, c, same, dactylus and pollex, lateral; d, same, fingers opened, mesial.
FIGURE 23. Leptalpheus degravei n in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 23. Leptalpheus degravei n. sp., holotype male (cl 5.1 mm), ULLZ 18510 [USNM 1705360], from Bocas del Toro, Panama: a, minor cheliped, ventrolateral; same, chela, ventrolateral; c, second pereopod, lateral; d, third pereopod, lateral; e, fourth pereopod, lateral; f, fifth pereopod, lateral.
FIGURE 22. Leptalpheus degravei n in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 22. Leptalpheus degravei n. sp., holotype male (cl 5.1 mm), ULLZ 18510 [USNM 1705360], from Bocas del Toro, Panama: a, frontal margin, dorsal; b, same, lateral; c, ventromesial carina of first antennular article, lateral; d, telson, dorsal; e, mandible, mesial; f, maxillule, mesial; g, maxilla, lateral; h, first maxilliped, lateral; i, second maxilliped, lateral; j, third maxilliped, lateral; k, second pleopod with appendix interna and appendix masculina, mesial; l, uropod, dorsal.
FIGURE 21. Leptalpheus azuero Anker, 2011 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 21. Leptalpheus azuero Anker, 2011 (a–e), Leptalpheus felderi Anker, Vera Caripe & Lira, 2006 (f–h), and Leptalpheus forceps Williams, 1965 (i–k). Leptalpheus azuero: ovigerous female (cl 4.7 mm), ULLZ 11823 [USNM 1545912], from Las Peñitas, Nicaragua (a, b) and ovigerous female (cl 6.4 mm), ULLZ 5917 [USNM 1541195], from Estero Aserradores, Nicaragua (c–e): a, major chela, lateral; b, same, mesial; c, major chela, dorsolateral; d, same, dactylus and pollex, dorsolateral; e, same, fingers opened, lateral. Leptalpheus felderi: male (cl 8.5 mm), UF 48038, from Wachapreague, Virginia, USA: f, major chela, mesial; g, same, dorsolateral; h, same, dactylus and pollex, dorsolateral. Leptalpheus forceps: male (cl 8.8 mm) (i), female (cl 5.3 mm) (j), ULLZ 18053 [USNM 1706385], from Bay St. Louis, Mississippi, USA and female (cl 6.0 mm) (k), ULLZ 5593 [USNM 1541048], from Nuevo Campechito, Mexico: i, frontal margin, dorsal; j, same; k, uropod with caudal appendix, dorsal.
FIGURE 20 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 20. Color patterns of the Leptalpheus axianassae species group. Leptalpheus hendrickxi Anker, 2011: a, male (cl 7.7 mm), ULLZ 5810 [USNM 1541151], from Paso Caballos, Nicaragua, lateral; b, female (cl 9.4 mm), ULLZ 6036 [USNM 1541281], from Las Peñitas, Nicaragua, lateral. Leptalpheus corderoae Salgado-Barragán et al., 2014: c, female (cl 8.3 mm), ULLZ 18237 [USNM 1706503], from Las Peñitas, Nicaragua, lateral. Leptalpheus axianassae Dworschak & Coelho, 1999: d, ovigerous female (cl 8.4 mm), ULLZ 18173 [USNM 1706443], from Ft. Pierce, Florida, USA, lateral; e, male (cl 7.3 mm), ULLZ 18173 [USNM 1706443], from Ft. Pierce, Florida, USA, lateral; f, male (cl 7.1 mm), UF 51713, from Bocas del Toro, Panama, lateral; g, same, dorsal; h, same, close-up of major chela, lateral. Photographs by the third author (a–e) and Paulo P.G. Pachelle (f–h).
FIGURE 17 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 17. Leptalpheus axianassae Dworschak & Coelho, 1999, male (cl 10.0 mm), ULLZ 18174 [USNM 1706444], from Ft. Pierce, Florida, USA: a, habitus, lateral; b, frontal margin, dorsal; c, same, lateral; d, antennular peduncle, ventral; e, antennal peduncle, ventral; f, mandible, mesial.
FIGURE 18 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 18. Leptalpheus axianassae Dworschak & Coelho, 1999, male (cl 10.0 mm), ULLZ 18174 [USNM 1706444], from Ft. Pierce, Florida, USA: a, second pereopod, lateral; b, third pereopod, lateral; c, fourth pereopod, lateral; d, fifth pereopod, lateral; e, first pleopod, mesial; f, second pleopod with appendix masculina and appendix interna, mesial; g, telson and uropods, lateral; h, same, dorsal.
FIGURE 15 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 15. Color patterns of Leptalpheus ankeri n. sp.: a. paratype ovigerous female (cl 10.1 mm), ULLZ 18503 [USNM 1705354], from Bocas del Toro, Panama, dorsal; b, same, lateral; c, paratype ovigerous female (cl 7.0 mm), UF 51704, from Bocas del Toro, Panama, dorsal; d, same, lateral; e, paratype ovigerous female (cl 11.5 mm), UF 51714, from Bocas del Toro, Panama, dorsal; f, same, lateral; g, same, close-up of major chela [morphotype A], lateral; h, paratype ovigerous female (cl 7.0 mm), UF 51704, from Bocas del Toro, Panama, close-up of major chela [morphotype A], lateral. Photographs by the first author (a, b) and Paulo P.G. Pachelle (c–h).
FIGURE 14. Leptalpheus ankeri n in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 14. Leptalpheus ankeri n. sp., non-type male (cl 5.9 mm), ULLZ 18707 [USNM 1706533], from Ft. Pierce, Florida, USA: a, telson and uropods, dorsal; b, same, lateral; c, second pereopod, lateral; d, third pereopod, lateral; e, fourth pereopod, lateral; f, fifth pereopod, lateral; g, second pleopod with appendix interna and appendix masculina, mesial; h, first pleopod, mesial.
FIGURE 16 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 16. Color patterns of Leptalpheus ankeri n. sp., continued: a, female (cl 7.2 mm), ULLZ 18708 [USNM 1706534], from Stann Creek, Belize, dorsal; b, same, lateral; c, female (cl 10.1 mm), ULLZ 18504 [USNM 1706527], from Bocas del Toro, Panama, dorsal; d, same, lateral; e, paratype female (cl 8.6 mm), UF 51703, from Bocas del Toro, Panama, dorsal; f, same, lateral; g, female (cl 11.4 mm), UF 51715, from Bocas del Toro, Panama, dorsal; h, same, lateral. Photographs by the third author (a, b), the first author (c, d), and Paulo P.G. Pachelle (e–h).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.