Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
695
datasets available to search
ShareScore release 0.7.1
Dataset results
695 results for “topologies”
Mutational synergy coordinately remodels chromatin accessibility, enhancer landscape and 3-Dimensional DNA topology to alter gene expression during leukemia induction (ChIP-seq)
GEO Series GSE146663. Mus musculus. 35 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Mutational synergy during leukemia induction remodels chromatin accessibility, modification and genome topology to alter gene expression
GEO Series GSE146669. Mus musculus. 65 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
PRC2 facilitates the regulatory topology required for poised enhancer function during pluripotent stem cell differentiation [RNA-seq EED]
GEO Series GSE89210. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Argonaute2 and LaminB repress transcription by controlling RNA Pol II recruitment and chromatin topology in Drosophila melanogaster (mRNA)
GEO Series GSE95844. Drosophila melanogaster. 10 samples. Type: Expression profiling by high throughput sequencing.
Setdb1 regulates Cohesin at H3K9me3-independent topological domains
GEO Series GSE123245. Mus musculus. 37 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Stage-specific dynamic reorganization of genome topology shapes transcriptional neighborhoods in developing human retinal organoids
GEO Series GSE229681. Homo sapiens. 5 samples. Type: Other.
High-resolution genome topology of human retina uncovers super enhancer-promoter interactions at tissue-specific and multifactorial disease loci [ATAC-seq]
GEO Series GSE202472. Homo sapiens. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcriptomic characterization of a human in vitro model of arrhythmogenic cardiomyopathy under topological and mechanical stimuli
GEO Series GSE115621. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Sensitivity of cohesin-chromatin association to high salt treatment corroborates non-topological mode of loop extrusion
GEO Series GSE166387. Homo sapiens. 46 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
CTCF-mediated topological boundaries during development foster appropriate gene regulation
GEO Series GSE83124. Mus musculus. 4 samples. Type: Other.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [II]
GEO Series GSE136328. Mus musculus. 44 samples. Type: Other.
A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs
GEO Series GSE45457. Mus musculus. 29 samples. Type: Genome binding/occupancy profiling by genome tiling array; Other; Genome binding/occupancy profiling by high throughput sequencing.
Liebenberg syndrome severity arises from variations in Pitx1 locus topology and ectopically transcribing cells
GEO Series GSE256337. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The fork protection complex generates DNA topological stress-induced DNA damage while ensuring full and faithful genome duplication [ChIP-seq]
GEO Series GSE239965. Saccharomyces cerevisiae. 88 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Topologically associating domains (TADs) are insufficient for the transcription of β-globin gene and sub-TADs are required for this process
GEO Series GSE269934. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
DNA topological regulation by topoisomerase IIβ-DNA-PK interaction is important for controlled hypoxia-inducible gene expression [TMP-seq]
GEO Series GSE285699. Homo sapiens. 12 samples. Type: Other.
An enhancer cluster controls gene activity and topology of the SCN5A-SCN10A locus in vivo
GEO Series GSE129067. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing; Other.
Evolutionary comparison reveals that diverging CCCTC-binding factor (CTCF) sites are signatures of ancestral topological associating domains borders
GEO Series GSE66900. Danio rerio; Strongylocentrotus purpuratus; Mus musculus. 63 samples. Type: Other.
Cohesin causes replicative DNA damage by trapping DNA topological stress
GEO Series GSE131558. Schizosaccharomyces pombe; Saccharomyces cerevisiae. 114 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Disruptions of Topological Chromatin Domains Causes Pathogenic Rewiring of Gene-Enhancer Interactions [4C-Seq-human]
GEO Series GSE66378. Homo sapiens. 6 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.