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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
Cohesin and CTCF control chromosomal contact dynamics in living cells [4C-seq]
GEO Series GSE197226. Mus musculus. 6 samples. Type: Other.
CTCF is selectively required for maintaining chromatin accessibility and gene expression in human erythropoiesis [ChIP-seq_CTCF]
GEO Series GSE281734. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Functional assessment of CTCF sites at cytokine-sensing mammary enhancers in mammary gland [4C-seq]
GEO Series GSE95757. Mus musculus. 4 samples. Type: Other.
Single base-pair resolution analysis of DNA binding motif with MoMotif reveals an oncogenic function of CTCF zinc-finger 1 mutation.
GEO Series GSE190118. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
gene expression of CTCF-depleted mouse oocyte
GEO Series GSE11664. Mus musculus. 10 samples. Type: Expression profiling by array.
Regulation of Chromatin Looping by CTCF and Cohesin
GEO Series GSE187487. Mus musculus. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
CTCF point mutation at R567 disrupts mouse heart development via 3D genome rearrangement and transcription dysregulation [4C-seq]
GEO Series GSE276654. Mus musculus. 8 samples. Type: Other.
Single base-pair resolution analysis of binding motif with diffMotif uncovers the oncogenic impact of CTCF mutations in breast cancer [ChIP-Seq]
GEO Series GSE190098. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Dissecting developmental disorders caused by CTCF mutation at R567 [ChIP-seq]
GEO Series GSE214686. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types [Hi-C]
GEO Series GSE98443. Homo sapiens. 14 samples. Type: Other.
cPRC1.2 and CTCF-Mediated Transition from Poised to Active Chromatin Loops Drives Bivalent Gene Activation
GEO Series GSE278946. Homo sapiens; Mus musculus. 43 samples. Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing.
Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia [CTCF_ChIPseq]
GEO Series GSE181759. Homo sapiens. 26 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The human β-globin enhancer LCR HS2 plays a role in forming a TAD by activating chromatin structure at neighboring CTCF sites
GEO Series GSE159130. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Decitabine disrupts EBV genomic epiallele DNA methylation patterns around CTCF binding sites to increase chromatin accessibility and lytic transcription in gastric cancer
GEO Series GSE239770. human gammaherpesvirus 4. 30 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Analysis of the vertebrate insulator protein CTCF binding sites in the human genome
GEO Series GSE5559. Homo sapiens. 42 samples. Type: Genome binding/occupancy profiling by genome tiling array.
CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [CUT&RUN_set1]
GEO Series GSE190987. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state [Mouse_Brd9_CTCF ChIP-seq]
GEO Series GSE236959. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Analysis of three-dimensional enhancer network regulated by CTCF in CD4+ T cells [RNA-seq]
GEO Series GSE243713. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
Rapid depletion of the cohesin subunits and CTCF reveals their role in maintaining high-order genome architecture [Hi-C]
GEO Series GSE181848. Mus musculus. 12 samples. Type: Other.
A genome-wide map of CTCF multivalency redefines the CTCF code
GEO Series GSE33819. Mus musculus; Mus spretus. 45 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.