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Data underpinning "Transmon platform for quantum computing challenged by chaotic fluctuations"
<p>Data set underlying the figures in the article "Transmon platform for quantum computing challenged by chaotic fluctuations" (https://doi.org/10.1038/s41467-022-29940-y)</p><p>From the perspective of many-body physics, the transmon qubit architectures currently developed for quantum computing are systems of coupled nonlinear quantum resonators. A certain amount of intentional frequency detuning ('disorder') is crucially required to protect individual qubit states against the destabilizing effects of nonlinear resonator coupling. In our paper, we investigate the stability of this variant of a many-body localized phase for system parameters relevant to current quantum processors developed by the IBM, Delft, and Google consortia, considering the cases of natural or engineered disorder. Applying three independent diagnostics of localization theory — a Kullback–Leibler analysis of spectral statistics, statistics of many-body wave functions (inverse participation ratios), and a Walsh transform of the many-body spectrum — we find that some of these computing platforms are dangerously close to a phase of uncontrollable chaotic fluctuations.</p>
Data for "MS²Rescore 3.0 is a modular, flexible, and user-friendly platform to boost peptide identifications, as showcased with MS Amanda 3.0"
<p>This data set contains reanalyzed data from the "MS2 500 ms" and "MS2 750 ms" workflow <a href="https://doi.org/10.1016/j.mcpro.2022.100219">originally published by Furtwängler et al. 2022</a>. </p><p>The full data set is available on ProteomeXchange via the PRIDE partner repository using ID <a href="https://www.ebi.ac.uk/pride/archive/projects/PXD029320">PXD029320</a>. <br> </p><p>This data set contains, for both workflows </p><ul><li>mzML files</li><li>Output files from analysis with MS Amanda + settings file</li><li>Output files from analysis with MS Amanda in combination with Percolator + settings file</li><li>Percolator pin files</li><li>Output files from analysis with MS²Rescore</li></ul>
Supplementary materials for the paper "Measuring End-user Developers' Episodic Experience of a Low-code Development Platform --- A Preliminary Study"
<p>This is the supplementary materials for the paper "Measuring End-user Developers' Episodic Experience of a Low-code Development Platform --- A Preliminary Study". It consists of raw data from questionnaire responses, participant groups for validation of the questionnaire, preliminary questionnaire, final questionnaire, task design and data analysis results.</p>
Access to digital finance: Equity crowdfunding across countries and platforms
Open the record for dataset details and reuse information.
Usability Evaluation of OFLAT Platform
<p>Data, weekly challenges and questionnaires used in Usability Evaluation of OFLAT Platform Dissertation.</p>
Analysis of maize growth under drought in an automated plant phenotyping platform
<p>Supplemental data accompanying the PhD thesis of Lennart Verbraeken.</p>
Application of regional meteorology and air quality models based on MIPS and LoongArch CPU Platform
<p>bcfile.zip: the clean boundary condition files.</p> <p>emisfile.zip: the emission files.</p> <p>icfile.zip: the clean initial condition files.</p> <p>tuvfile.zip and o3mapfile.zip: the photolysis files.</p> <p>outputfile.zip: the computation results outputted by CAMx model for MIPS and X86 platforms.</p> <p>wrfcamx.zip: meteorological files.</p> <p>outputfile_LoongArch_platform.tar.gz: the computation results outputted by CAMx model for LoongArch platforms.</p> <p>bin_executable_on_LoongArch_platform.tar.gz: The executable files of CAMx model which can run stably on LoongArch platform, including noMPI, MPICH and OpenMP version.</p> <p>bin_executable_on_MIPS_platform.tar.gz: The executable files of CAMx model which can run stably on MIPS platform, including noMPI, MPICH and OpenMP version</p>
Test data for MetIVA ( An XR-based Interactive Visualization Platform for Real-time Exploring Dynamic Earth Science Data)
<p>Here,we presented the minimum demanded dataset to test the basic fuction of the software of MetIVA, which an XR-base interactive visualization platform for real-time exploring dynamic earth science data. The dynamic realtime data of traffic information (such as traffic volume, traffic spped, jam conditions) is directy obtained from the third-party supplier, such as Mapbox in the test version of MetIVA, the users can change it to other sources. The users have their own accounts on the cloud computing platform to run the numerical models (such as WRF), the outputed results (in NetCDF format) can be sent to cloud storage and the link address need to be provided in the MetIVA.</p>
TABLE 2 in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
<p><b>TABLE 2.</b> List of species reported in the literature from the Alboran Sea and Alboran Platform, including new additions from this study (in bold). Reguant & Maluquer (1992) include subfossil and fossil material was also considered because the Alboran’s material analysed here might contain subfossils. References: 1. Álvarez (1992b); 2. Álvarez (1994); 3. Harmelin & d'Hondt (1992a); 4. Harmelin & d'Hondt (1992b); 5. Ramalho <i>et al</i>. (2020); 6. Reguant & Maluquer (1992); 7. Templado <i>et al</i>. (2006). In the column ‘this study’ the letters indicate the different samples: A, BV12; B, BV13; C, BV14; D, BV15; * indicates that the genus was previously cited, and # that the taxon was mentioned in the fossil record.</p><table><tbody><tr><th><b>Family</b></th><th><b>Taxa</b></th><th><b>Alboran Platform</b></th><th><b>Alboran Sea</b></th><th><b>This study</b></th></tr></tbody><tbody><tr><th>Vesiculariidae</th><td><i>Amathia lendigera</i> (Linnaeus, 1758) <i>A. pruvoti</i> Calvet, 1911</td><td>7 7</td><td>7 7</td><td></td></tr><tr><th>Alcyonidiidae</th><td><i>Pherusella tubulosa</i> (Ellis & Solander, 1786)</td><td>7</td><td>7</td><td></td></tr><tr><th>Clavoporidae</th><td><i>Metalcyonidium gautieri</i> d’Hondt, 1976</td><td></td><td>4</td><td></td></tr><tr><th>Nolellidae</th><td><i>Nolella dilatata</i> (Hincks, 1860) <i>N. gigantea</i> (Busk, 1856)</td><td>7 7</td><td>7 7</td><td></td></tr><tr><th>Mimosellidae</th><td><i>Bantariella verticillata</i> (Heller, 1867)</td><td>1, 7</td><td>1, 7</td><td></td></tr><tr><th>Walkeriidae</th><td><i>Walkeria tuberosa</i> Heller, 1867 <i>W. uva</i> (Linnaeus, 1758)</td><td>7 7</td><td>7 7</td><td></td></tr><tr><th></th><td><i>A. anguina</i> (Linnaeus, 1758)</td><td>7</td><td>7</td><td></td></tr><tr><th>Aeteidae</th><td><i>Aetea sica</i> (Couch, 1844)</td><td>1, 7</td><td>1, 7</td><td></td></tr><tr><th></th><td><i>A. truncata</i> (Landsborough, 1852)</td><td>1, 7</td><td>1, 7</td><td></td></tr><tr><th>Scrupariidae</th><td><i>Scruparia ambigua</i> (d’Orbigny, 1841)</td><td>7</td><td>7</td><td></td></tr><tr><th>Membraniporidae</th><td><i>Calpensia nobilis</i> (Esper, 1796) <i>Membranipora membranacea</i> (Linnaeus, 1767)</td><td>1, 7</td><td>6 1, 7</td><td></td></tr><tr><th>Electridae</th><td><i>Electra posidoniae</i> Gautier, 1954</td><td></td><td>1</td><td></td></tr><tr><th></th><td><i>Amphiblestrum lyrulatum</i> (Calvet, 1907)</td><td>7</td><td>3, 5, 7</td><td>A, B, C, D</td></tr><tr><th></th><td><i>Callopora dumerilii</i> (Audouin, 1826) <b>#</b></td><td>1, 7</td><td>1, 3, 7</td><td></td></tr><tr><th></th><td><i>C. rylandi</i> Bobin & Prenant, 1965</td><td></td><td></td><td>A</td></tr><tr><th></th><td><i>Copidozoum exiguum</i> (Barroso, 1920)</td><td></td><td>3, 5</td><td></td></tr><tr><th>Calloporidae</th><td><i>C. balgimae</i> Reverter-Gil & Fernández-Pulpeiro, 1999</td><td></td><td>3</td><td></td></tr><tr><td><i>C. planum</i> (Hincks, 1880)</td><td>1, 7</td><td>1, 5, 7</td><td>A, B</td></tr><tr><th></th><td><i>C. tenuirostre</i> (Hincks, 1880) <b>#</b></td><td>7</td><td>7</td><td></td></tr><tr><th></th><td><i>Corbulella maderensis</i> (Waters, 1898)</td><td>1, 7</td><td>1, 7</td><td></td></tr><tr><th></th><td><i>Crassimarginatella crassimarginata</i> (Hincks, 1880)</td><td></td><td>3</td><td>A, B</td></tr><tr><th></th><td><i>C. solidula</i> (Hincks, 1860)</td><td></td><td></td><td>A</td></tr><tr><th></th><td><i>Parellisina curvirostris</i> (Hincks, 1862a) <b>#</b></td><td></td><td>3</td><td></td></tr><tr><th>Chaperiidae</th><td><i>Chaperiopsis annulus</i> (Manzoni, 1870) <b>#</b></td><td></td><td>6</td><td></td></tr><tr><th>Heliodomidae</th><td><i>Setosellina capriensis</i> (Waters, 1926)</td><td></td><td>6</td><td></td></tr><tr><td><i>S. roulei</i> Calvet, 1906a</td><td></td><td>3</td><td>A, C, D</td></tr><tr><th></th><td><i>Cupuladria</i> cf. <i>canariensis</i> (Busk, 1859a)</td><td></td><td>6</td><td></td></tr><tr><th>Cupuladriidae</th><td><b><i>Cupuladria</i> sp.</b></td><td>*</td><td>*</td><td>B</td></tr><tr><td><i>C. vindobonensis</i> Baluk & Radwanski, 1984 <b>#</b></td><td></td><td>6</td><td></td></tr><tr><th></th><td><i>Reussirella haidingeri</i> (Reuss, 1848) <b>#</b></td><td></td><td>6</td><td></td></tr><tr><th></th><td><i>Chartella elongata</i> Cook, 1968</td><td></td><td></td><td>B</td></tr><tr><th>Flustridae</th><td><i>C. tenella</i> Hincks, 1887</td><td>7</td><td>7</td><td></td></tr><tr><td><i>Hincksina flustroides</i> (Hincks, 1877)</td><td>1, 7</td><td>1,7</td><td></td></tr><tr><th></th><td><i>H. longispinosa</i> Harmelin & d’Hondt, 1992a</td><td></td><td></td><td>A</td></tr><tr><th></th><td><i>Bicellariella ciliata</i> (Linnaeus, 1758)</td><td></td><td>3</td><td></td></tr><tr><th></th><td><i>Bugulina calathus</i> (Norman, 1868)</td><td>1, 7</td><td>1, 7</td><td></td></tr><tr><th></th><td><i>B. flabellata</i> (Thompson <i>in</i> Gray, 1848)</td><td>7</td><td>7</td><td></td></tr><tr><th>Bugulidae</th><td><i>B. fulva</i> (Ryland, 1960)</td><td>1, 7</td><td>1, 7</td><td></td></tr><tr><th></th><td><i>B. stolonifera</i> (Ryland, 1960)</td><td></td><td>1</td><td></td></tr><tr><th></th><td><i>B. turbinata</i> (Alder, 1857)</td><td>7</td><td>7</td><td></td></tr><tr><th></th><td><i>Kinetoskias smitti</i> Danielssen, 1868</td><td></td><td>3</td><td></td></tr><tr><th>Beanidae</th><td><i>Beania hirtissima</i> (Heller, 1867)</td><td>7</td><td>7</td><td></td></tr><tr><td><i>B. mirabilis</i> Johnston, 1840</td><td>1, 7</td><td>1, 7</td><td></td></tr><tr><th></th><td><i>Caberea boryi</i> (Audouin, 1826) <b>#</b></td><td>1, 7</td><td>1, 3</td><td></td></tr><tr><th></th><td><i>Cradoscrupocellaria reptans</i> (Linnaeus, 1758)</td><td>7</td><td>7</td><td></td></tr><tr><th></th><td><i>Scrupocaberea maderensis</i> (Busk, 1860a)</td><td>7</td><td>7</td><td></td></tr><tr><th>Candidae</th><td><i>Scrupocellaria aegeensis</i> Harmelin, 1969</td><td></td><td></td><td>A, B, C, D</td></tr><tr><td><i>S. delilii</i> (Audouin, 1826)</td><td>1, 7</td><td>1, 7</td><td></td></tr><tr><th></th><td><i>S. incurvata</i> Waters, 1897</td><td>3, 7</td><td>3, 5, 7</td><td>A, B, C, D</td></tr><tr><th></th><td><i>S. scrupea</i> Busk, 1852</td><td>7</td><td>7</td><td></td></tr><tr><th></th><td><i>S. scruposa</i> (Linnaeus, 1758)</td><td>1, 7</td><td>1, 7</td><td></td></tr><tr><th></th><td><i>Bryocryptella koehleri</i> (Calvet, 1896)</td><td></td><td>3</td><td></td></tr><tr><th></th><td><i>B. tubulata</i> (Busk, 1861)</td><td>7</td><td>5, 6, 7</td><td></td></tr><tr><th>Bryocryptellidae</th><td><i>Palmiskenea gautieri</i> Madurell <i>et al</i>., 2013</td><td></td><td>5</td><td>A, B, C, D</td></tr><tr><th></th><td><i>Porella minuta</i> (Norman, 1868)</td><td></td><td>3</td><td></td></tr><tr><th></th><td><i>P. concinna</i> (Busk, 1854)</td><td>7</td><td>7</td><td></td></tr><tr><th></th><td><i>Escharella immersa</i> (Fleming, 1828)</td><td></td><td>3</td><td></td></tr><tr><th></th><td><i>E. octodentata</i> (Hincks, 1880)</td><td>7</td><td>3, 7</td><td></td></tr><tr><th></th><td><i>E. rylandi</i> Geraci, 1974</td><td></td><td>6</td><td></td></tr><tr><th></th><td><b><i>E. similis</i> n. sp.</b></td><td></td><td>5</td><td>A, B, C, D</td></tr><tr><th></th><td><i>E. variolosa</i> (Johnston, 1838) <b>#</b></td><td></td><td>6</td><td></td></tr><tr><th>Romancheinidae</th><td><i>E. ventricosa</i> (Hassall, 1842) <i>Escharoides coccinea</i> (Abildgaard, 1806) <b>#</b></td><td>3, 7 2, 7</td><td>2, 3, 5, 7 2, 3, 7</td><td>A</td></tr><tr><th></th><td><i>E. mamillata</i> (Wood, 1844) <b>#</b></td><td></td><td>2, 5, 6</td><td></td></tr><tr><th></th><td><i>E. megarostris</i> (Canu & Bassler, 1928)</td><td></td><td>3</td><td>A, B</td></tr><tr><th></th><td><b><i>Hemicyclopora admirabilis</i> n. sp.</b></td><td></td><td></td><td>A, B</td></tr><tr><th></th><td><i>H. discrepans</i> (Jullien, 1903)</td><td></td><td>3</td><td></td></tr><tr><th></th><td><i>H. multispinata</i> (Busk, 1861)</td><td>7</td><td>7</td><td></td></tr><tr><th>Umbonulidae</th><td><i>Umbonula ovicellata</i> Hastings, 1944</td><td>2</td><td>2</td><td></td></tr><tr><th>Tessaradomidae</th><td><i>Tessaradoma boreale</i> (Busk, 1860c) <b>#</b></td><td></td><td>6</td><td></td></tr><tr><th></th><td><i>Prenantia cheilostoma</i> (Manzoni, 1869) <b>#</b></td><td>7</td><td>2, 7</td><td></td></tr><tr><th></th><td><i>Smittina cervicornis</i> (Pallas, 1766) <b>#</b></td><td>2, 7</td><td>2, 5, 6, 7</td><td>A, B, C, D</td></tr><tr><th></th><td><i>S. crystallina</i> (Norman, 1867)</td><td>3, 7</td><td>3, 5, 7</td><td>A, B, C, D</td></tr><tr><th>Smittinidae</th><td><i>S. landsborovii</i> (Johnston, 1847) <b>#</b> <i>S. remotorostrata</i> (Canu & Bassler, 1928) <b>#</b></td><td>2, 7</td><td>2, 6, 7 3</td><td></td></tr><tr><th></th><td><i>Smittoidea marmorea</i> (Hincks, 1877)</td><td>2, 7</td><td>2, 7</td><td></td></tr><tr><th></th><td><b><i>S.</i> aff. <i>reticulata</i></b> (MacGillivray, 1842) <b>#</b></td><td>*</td><td>*</td><td>A, B, C</td></tr><tr><th></th><td><i>S. reticulata</i> (McGillivray, 1842) <b>#</b></td><td>7</td><td>3, 6, 7</td><td></td></tr><tr><th></th><td><i>Hippoporina pertusa</i> (Esper, 1796)</td><td></td><td>2, 3</td><td></td></tr><tr><th></th><td><i>Pentapora foliacea</i> (Ellis & Solander, 1786)</td><td>2</td><td>2, 3</td><td></td></tr><tr><th></th><td><i>P. ottomuelleriana</i> (Moll, 1803) <b>#</b></td><td>2, 7</td><td>2, 6, 7</td><td></td></tr><tr><th></th><td><i>P. fascialis</i> (Pallas, 1766) <b>#</b></td><td>7</td><td>5, 6, 7</td><td>D</td></tr><tr><th></th><td><i>Schizomavella (S.) auriculata</i> (Hassall, 1842) #</td><td>2, 7</td><td>2, 3, 6, 7</td><td></td></tr><tr><th></th><td><i>S. (S.) cornuta</i> (Heller, 1867)</td><td>7</td><td>7</td><td></td></tr><tr><th>Bitectiporidae</th><td><i>S. (S.) hastata</i> (Hincks, 1862b)</td><td>2, 7</td><td>2</td><td></td></tr><tr><th></th><td><b><i>S.</i> (<i>S.</i>) aff. <i>linearis</i></b></td><td></td><td></td><td>A, D</td></tr><tr><th></th><td><b><i>S.</i> (<i>S.</i>) <i>linearis</i></b> (Hassall, 1841) <b>#</b></td><td>2, 7</td><td>2, 3, 7</td><td>A, B, C, D</td></tr><tr><th></th><td><i>S.</i> (<i>S.</i>) <i>mamillata</i> (Hincks, 1880)</td><td>2, 7</td><td>2, 7</td><td></td></tr><tr><th></th><td><i>S. (S.) teresae</i> Reverter-Gil & Fernádez-Pulpeiro, 1995</td><td>7</td><td>7</td><td></td></tr><tr><th></th><td><b><i>Schizomavella</i> sp.</b></td><td>*</td><td>*</td><td>D</td></tr><tr><th>Lanceoporidae</th><td><i>Calyptotheca</i> sp. <i>Stephanotheca arrogata</i> (Waters, 1879b)</td><td></td><td>3 3</td><td></td></tr><tr><th>Watersiporidae</th><td><i>Terwasipora complanata</i> (Norman, 1864)</td><td></td><td></td><td>A</td></tr><tr><th></th><td><i>Schizobrachiella sanguinea</i> (Norman, 1868)</td><td>2, 7</td><td>2, 3, 7</td><td></td></tr><tr><th></th><td><i>Schizoporella dunkeri</i> (Reuss, 1848) <b>#</b></td><td>2, 7</td><td>2, 3, 6, 7</td><td></td></tr><tr><th>Schizoporellidae</th><td><i>S. magnifica</i> Hincks, 1886</td><td>7</td><td>3, 7</td><td></td></tr><tr><th></th><td><i>S. mutabilis</i> Calvet, 1927 <b>#</b></td><td></td><td>2, 3, 6</td><td></td></tr><tr><th></th><td><i>S. unicornis</i> (Johnston <i>in</i> Wood, 1844)</td><td></td><td>6</td><td></td></tr><tr><th>Myriaporidae</th><td><i>Myriapora truncata</i> (Pallas, 1766)</td><td>2, 7</td><td>2, 5, 6, 7</td><td>C</td></tr><tr><th>Cheiloporinidae</th><td><i>Cheiloporina circumcincta</i> (Neviani, 1896) <b>#</b></td><td>7</td><td>2, 7</td><td>B</td></tr><tr><td><i>Hagiosynodos kirchenpaueri</i> (Heller, 1867)</td><td></td><td>6</td><td></td></tr><tr><th></th><td><i>H. latus</i> (Busk, 1856)</td><td>7</td><td>7</td><td></td></tr><tr><th>Cryptosulidae</th><td><i>Cryptosula pallasiana</i> (Moll, 1803) <b>#</b></td><td></td><td>6</td><td></td></tr><tr><th>Phoceanidae</th><td><i>Phoceana columnaris</i> Jullien, 1903</td><td>7</td><td>3, 5, 7</td><td>A, B, C, D</td></tr><tr><th></th><td><i>Microporella appendiculata</i> (Heller, 1867)</td><td>7</td><td>7</td><td></td></tr><tr><th></th><td><i>M. ciliata</i> (Pallas, 1766) <b>#</b></td><td>2, 3, 7</td><td>2, 3, 6, 7</td><td></td></tr><tr><th>Microporellidae</th><td><i>M. funbio</i> Ramalho & López-Fé, 2020 <i>in</i> Ramalho <i>et al</i>. 2020b</td><td></td><td></td><td>C, D</td></tr><tr><th></th><td><i>M. marsupiata</i> (Busk, 1860a)</td><td></td><td>3, 6</td><td></td></tr><tr><th></th><td><i>M. verrucosa</i> (Peach, 1868) <b>#</b></td><td></td><td>3, 5, 6</td><td>A, B, C, D</td></tr><tr><th>Fenestrulinidae</th><td><i>Fenestrulina barrosoi</i> Álvarez, 1993a</td><td>2, 7</td><td>2, 7</td><td>A</td></tr><tr><td><i>F. malusii</i> (Audouin, 1826)</td><td>7</td><td>2, 3, 5, 7</td><td>A, C</td></tr><tr><th>Lacernidae</th><td><i>Arthropoma cecilii</i> (Audouin, 1826)</td><td>7</td><td>2, 3, 7</td><td>A, B, C, D</td></tr><tr><th></th><td><i>Herentia hyndmanni</i> (Johnston, 1847) <b>#</b></td><td>3, 7</td><td>2, 3, 5, 6, 7</td><td>A, B, C, D</td></tr><tr><th>Escharinidae</th><td><i>Escharina johnstoni</i> (Quelch, 1884)</td><td>3, 7</td><td>2, 3, 5, 7</td><td>A, B, C, D</td></tr><tr><td><i>E. vulgaris</i> (Moll, 1803) <b>#</b></td><td>7</td><td>2, 3, 5, 6, 7</td><td></td></tr><tr><th></th><td><b><i>E.</i> aff. <i>vulgaris</i> <i>#</i></b></td><td>*</td><td>*</td><td>A, B, D</td></tr><tr><th></th><td><i>Buffonellaria divergens</i> (Smitt, 1873)</td><td>2, 7</td><td>2,?3, 7</td><td></td></tr><tr><th></th><td><i>Buskea dichotoma</i> (Hincks, 1862c)</td><td>7</td><td>2, 3, 5, 7</td><td></td></tr><tr><th></th><td><i>B. medwaves</i> Ramalho <i>et al</i>., 2020</td><td></td><td>5</td><td>A, B, C, D</td></tr><tr><th></th><td><i>B. nitida</i> Heller, 1867</td><td>7</td><td>6, 7</td><td>B, C, D</td></tr><tr><th></th><td><i>Turbicellepora avicularis</i> (Hincks, 1860) <b>#</b></td><td>2, 7</td><td>2, 5, 7</td><td></td></tr><tr><th></th><td><i>T. camera</i> Hayward, 1978</td><td>7</td><td>7</td><td></td></tr><tr><th></th><td><i>T. cantabra</i> (Barroso, 1919)</td><td><b>7</b></td><td>2, 7</td><td>A, B, C, D</td></tr><tr><th></th><td><i>T. coronopus</i> (Wood, 1844) <b>#</b></td><td>7</td><td>6, 7</td><td></td></tr><tr><th></th><td><i>T. magnicostata</i> (Barroso, 1919)</td><td>7</td><td>6, 7</td><td></td></tr><tr><th></th><td><i>T. tubigera</i> (Busk, 1859b) <b>#</b></td><td>7</td><td>6, 7</td><td></td></tr><tr><th>Celleporidae</th><td><i>Cellepora pumicosa</i> (Pallas, 1766) <b>#</b></td><td>2, 7</td><td>2, 6, 7</td><td></td></tr><tr><th></th><td><i>Celleporina caliciformis</i> (Lamouroux, 1816)</td><td>7</td><td>7</td><td></td></tr><tr><th></th><td><i>C. caminata</i> (Waters, 1879c) <b>#</b></td><td></td><td>6</td><td></td></tr><tr><th></th><td><i>C. decipiens</i> Hayward, 1976</td><td></td><td>2</td><td></td></tr><tr><th></th><td><i>C. lucida</i> (Hincks, 1880)</td><td>3, 7</td><td>3, 7</td><td>A, B, C, D</td></tr><tr><th></th><td><i>C. mangnevillana</i> (Lamouroux, 1816)</td><td>2, 7</td><td>2, 7</td><td></td></tr><tr><th></th><td><b><i>Lagenipora</i> cf. <i>lepralioides</i></b> (Norman, 1868)</td><td></td><td></td><td>D</td></tr><tr><th></th><td><i>Omalosecosa ramulosa</i> (Linnaeus, 1767) <b>#</b></td><td>2, 7</td><td>2, 3, 7</td><td></td></tr><tr><th></th><td><i>Palmicellaria aviculifera</i> (Canu & Bassler, 1928)</td><td>7</td><td>7</td><td></td></tr><tr><th></th><td><i>P. elegans</i> Alder, 1864</td><td></td><td>6</td><td></td></tr><tr><th></th><td><i>P. skenei</i> (Ellis & Solander, 1786)</td><td>7</td><td>3, 7</td><td></td></tr><tr><th></th><td><i>Dentiporella sardonica</i> (Waters, 1879c)</td><td>2, 7</td><td>2, 7</td><td></td></tr><tr><th></th><td><i>Reteporella couchii</i> (Hincks, 1878)</td><td>7</td><td>2, 3, 5, 7</td><td>A, B</td></tr><tr><th></th><td><i>R. grimaldii</i> (Jullien, 1903)</td><td>2, 7</td><td>2, 7</td><td>A, B, D</td></tr><tr><th></th><td><i>R. mediterranea</i> (Smitt, 1867)</td><td></td><td></td><td>A, B, D</td></tr><tr><th></th><td><i>R. sparteli</i> (Calvet, 1906a)</td><td></td><td>3</td><td></td></tr><tr><th>Phidoloporidae</th><td><i>Rhynchozoon bispinosum</i> (Johnston, 1847) <i>R. neapolitanum</i> (Gautier, 1962)</td><td>7</td><td>2 7</td><td></td></tr><tr><th></th><td><i>R. pseudodigitatum</i> Zabala & Maluquer, 1988</td><td>7</td><td>7</td><td></td></tr><tr><th></th><td><i>Schizoretepora serratimargo</i> (Hincks, 1886)</td><td>2, 7</td><td>2, 7</td><td></td></tr><tr><th></th><td><i>Schizotheca fissa</i> (Busk, 1856)</td><td>7</td><td>3, 7</td><td></td></tr><tr><th></th><td><i>S. tuberigera</i> (Jullien, 1903)</td><td></td><td>3, 5</td><td>A, B, D</td></tr><tr><th></th><td><i>Stephanollona armata</i> (Hincks, 1862b)</td><td></td><td>2</td><td></td></tr><tr><th>Stomatoporidae</th><td><b><i>Stomatopora</i> sp.</b></td><td></td><td></td><td>A, B, C, D</td></tr><tr><th></th><td><i>Exidmonea atlantica</i> (Forbes <i>in</i> Johnston, 1847)</td><td></td><td>4</td><td></td></tr><tr><th></th><td><i>E. coerulea</i> (Harmelin, 1976)</td><td></td><td>4</td><td></td></tr><tr><th>Tubuliporidae</th><td><b><i>Exidmonea</i> sp.</b> <i>Tubulipora liliacea</i> (Pallas, 1766)</td><td></td><td>* 4</td><td>A, B, C, D</td></tr><tr><th></th><td><i>T. notomala</i> (Busk, 1875)</td><td></td><td>4</td><td></td></tr><tr><th></th><td><b><i>Tubulipora</i> sp.</b></td><td></td><td>*</td><td>A</td></tr><tr><th></th><td><i>“Cardioecia” watersi</i> (O'Donoghue & de Watteville, 1939)</td><td></td><td>6</td><td></td></tr><tr><th></th><td><i>Desmeplagioecia amphorae</i> Harmelin, 1976</td><td></td><td>4</td><td></td></tr><tr><th></th><td><i>D. violacea</i> Harmelin, 1976</td><td></td><td>4</td><td></td></tr><tr><th>Plagioeciidae</th><td><i>Diplosolen obelium</i> (Johnston, 1838)</td><td>2, 7</td><td>2, 7</td><td></td></tr><tr><th></th><td><i>Plagioecia dorsalis</i> (Waters, 1879d)</td><td></td><td>4</td><td></td></tr><tr><th></th><td><i>P. inoedificata</i> (Jullien, 1882)</td><td></td><td>4, 5</td><td>A, B, C, D</td></tr><tr><th></th><td><i>P. patina</i> (Lamarck, 1816)</td><td>7</td><td>7</td><td></td></tr><tr><th></th><td><i>P. sarniensis</i> (Norman, 1864) <b>#</b></td><td>2, 7</td><td>2, 7</td><td></td></tr><tr><th>Oncosoeciidae</th><td><i>Oncousoecia dilatans</i> (Johnston, 1847)</td><td>4, 7</td><td>4, 7</td><td></td></tr><tr><th>Terviidae</th><td><i>Tervia irregularis</i> (Meneghini, 1844) <b>#</b></td><td></td><td>4, 5, 6</td><td>A, B, C, D</td></tr><tr><th>Annectocymidae</th><td><i>Annectocyma major</i> (Johnston, 1847)</td><td>2, 4, 7</td><td>2, 4, 7</td><td>A, C</td></tr><tr><td><i>Annectocyma</i> spp.</td><td></td><td>4</td><td></td></tr><tr><th></th><td><i>Entalophoroecia balgimae</i> Harmelin & d’Hondt, 1992b</td><td></td><td>4</td><td></td></tr><tr><th></th><td><i>E. deflexa</i> (Couch, 1842)</td><td></td><td>4, 5</td><td>A, B, C, D</td></tr><tr><th>Entalophoridae</th><td><i>E. elegans</i> (Norman, 1909)</td><td></td><td>4</td><td></td></tr><tr><th></th><td><i>E. gracilis</i> Harmelin, 1976</td><td>4, 7</td><td>4, 7</td><td></td></tr><tr><th></th><td><i>Entalophoroecia</i> spp.</td><td>4</td><td>4</td><td></td></tr><tr><th></th><td><b><i>Mecynoecia</i> sp.</b></td><td></td><td></td><td>A, B, C, D</td></tr><tr><th>Frondiporidae</th><td><i>Frondipora verrucosa</i> (Lamouroux, 1821) <b>#</b></td><td>2</td><td>2, 4</td><td></td></tr><tr><th></th><td><i>Crisia aculeata</i> Hassall, 1841</td><td></td><td>4</td><td></td></tr><tr><th>Crisiidae</th><td><i>C. calyptostoma</i> Hayward & Ryland, 1978</td><td></td><td>4</td><td></td></tr><tr><td><i>C. pyrula</i> Harmelin, 1990</td><td>2</td><td>2, 4</td><td></td></tr><tr><th></th><td><i>C. tenella</i> Calvet, 1906b</td><td></td><td>4</td><td></td></tr><tr><th></th><td><b><i>Crisia</i> sp.</b></td><td>*</td><td>*</td><td>A, B, C, D</td></tr><tr><th></th><td><i>Hornera frondiculata</i> (Lamarck, 1816) <b>#</b></td><td></td><td>6</td><td></td></tr><tr><th></th><td><i>H. lichenoides</i> (Linnaeus, 1758)</td><td></td><td>4</td><td>A, B, C</td></tr><tr><th></th><td><i>H.</i> cf. <i>humilis</i> Busk, 1859b <b>#</b></td><td></td><td>6</td><td></td></tr><tr><th></th><td><i>Disporella alboranensis</i> Álvarez, 1992a</td><td>2, 7</td><td>2, 7</td><td></td></tr><tr><th>Horneridae</th><td><i>D. piramidata</i> Álvarez, 1992a</td><td>2, 7</td><td>2, 7</td><td></td></tr><tr><th></th><td><i>D. robusta</i> Álvarez, 1992a</td><td>2, 7</td><td>2, 7</td><td></td></tr><tr><th></th><td><i>Lichenoporidae</i></td><td>*</td><td>*</td><td>B, D</td></tr><tr><th></th><td><i>Lichenopora</i> spp.</td><td></td><td>4</td><td></td></tr><tr><th></th><td><i>Patinella distincta</i> (Álvarez, 1993b)</td><td>2, 7</td><td>2, 7</td><td></td></tr><tr><th>Number of previous records</th><td></td><td>127</td><td>209</td><td></td></tr><tr><th>Number of new records</th><td></td><td>30</td><td>13</td><td></td></tr></tbody></table><p>,,,,,,Continued on the next page</p><p>,,,,,,Continued on the next page</p><p>,,,,,,Continued on the next page</p><p>,,,,,,Continued on the next page</p><p>,,,,,,Continued on the next page</p>
Osiris: a platform for advertising agricultural machinery rentals
<p>This dataset contains three spreadsheets of heuristic evaluations conducted by experts and also the prototypes they used. The evaluations assess the usability and effectiveness of various systems based on established heuristic principles. Each spreadsheet includes detailed assessments, observations, and ratings provided by the experts, offering valuable insights into the user interface and experience. These evaluations are intended to support research and improvement of usability practices in the context of the evaluated systems.</p>
Data for Machine Learning Guided Design of Nerve-on-A-Chip Platforms with Promoted Neurite Outgrowth
Open the record for dataset details and reuse information.
AlertCops use data and social platforms on the Camino de Santiago
<p><span><span>AlertCops utiliza datos y plataformas sociales en el Camino de Santiago. </span></span></p>
Colorectal cancer patients-derived immunity-organoid platform unveils cancer-specific tissue markers associated with immunotherapy resistance.
Open the record for dataset details and reuse information.
Supplementary material from: Microfluidic vessel-on-chip platform for investigation of cellular defects in venous malformations and responses to various shear stress and flow conditions
Open the record for dataset details and reuse information.
Bins with greater than 50% completeness and less than 10% contamination from the paper "Benchmarking Metagenomic Binning Tools on Real Datasets Across Sequencing Platforms and Binning Modes".
<p>These bins, which exhibit greater than 50% completeness and less than 10% contamination, including MQ, NC, and HQ bins, were recovered from seven different data-binning combinations across five real-world datasets.</p> <p>CheckM2 results for the bins generated from each sample were also provided to corroborate the findings.</p> <p>Completeness and contamination were evaluated using CheckM 2 (version 1.0.2). We noted that the results from running CheckM2 may exhibit slight variations, but these differences do not affect the overall assessment.</p>
Establishing autonomous testing of bacterial expression systems using a robotic platform.
<p>Data of fluorescence and optical density measurements for cultivations of <em>E. coli</em> and <em>B. subtilis</em> in an active learning experiment using a life science automation platform. Additionally SBOL and Genbank files of the genetic constructs are supplied. Furthermore scripts for running the experiment on a Analytik Jena automation platform as well as the software controlling the experiment.</p>
BactPrep: A user-friendly whole-genome sequencing analysis platform for the detection of homologous recombination and horizontal gene transfer in bacteria - Sample Dataset
<p>This is the dataset used as the sample dataset for the pipeline BactPrep. This dataset consists of 218 <em>Streptococcus pneumoniae</em> PMEN1 WGS assemblies collected from the year 1984 - 2008 from 22 unique countries globally. The raw sequencing data was originally published in the work: Rapid pneumococcal evolution in response to clinical interventions (doi: 10.1371/journal.ppat.1002745) under the bioproject PRJEB2085.</p> <p>We have assembled the raw sequences records with the following steps: 1) raw reads were first quality checked using fastQC 0.11.9; 2) adapters and low quality reads were removed using Trimmomatic 0.39 with parameter “ILLUMINACLIP:TruSeq2-PE.fa:2:30:10:2:keepBothReads LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36”; 3) trimmed reads were error-corrected and assembled into WGS assemblies using SPAdes 3.15.0 with parameters "--careful --mismatch-correction”.</p>
Chimpanzee identification and social Network construction through an online citizen science platform
<p><span><span><span><span><span><span><span><span><span><span><span>Citizen science has grown rapidly in popularity in recent years due to its potential to educate and engage the public while providing a means to address a myriad of scientific questions. However, the rise in popularity of citizen science has also been accompanied by concerns about the quality of data emerging from citizen science research projects. We assessed data quality in the online citizen scientist platform Chimp&See, which hosts camera trap videos of chimpanzees (<i>Pan troglodytes</i>) and other species across Equatorial Africa. In particular, we compared detection and identification of individual chimpanzees by citizen scientists to that of experts with years of experience studying those chimpanzees. We found that citizen scientists typically detected the same number of individual chimpanzees as experts, but assigned far fewer identifications (IDs) to those individuals. Those IDs assigned, however, were nearly always in agreement with the IDs provided by experts. We applied the data sets of citizen scientists and experts by constructing social networks from each. We found that both social networks were relatively robust and shared a similar structure, as well as having positively correlated individual network positions. Our findings demonstrate that, although citizen scientists produced a smaller data set based on fewer confirmed IDs, the data strongly reflect expert classifications and can be used for meaningful assessments of group structure and dynamics. This approach expands opportunities for social research and conservation monitoring in great apes and many other individually identifiable species. </span></span></span></span></span></span></span></span></span></span></span></p>
Single-cell RNA sequencing of CNS-infiltrating HSC-derived phagocytes of Ms4a3Ai14, BM chimeric mice (CD45.2 Csf2rb-/-: CD45.1 Csf2rb+/+ and CD45.2 Ifngr1-/-: CD45.1 Ifngr1+/+) using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.
<p><strong>Single-cell RNA sequencing of CNS-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE, BM chimeric mice (CD45.2 <em>Csf2rb</em><sup>-/-</sup>: CD45.1 <em>Csf2rb</em><sup>+/+</sup> and CD45.2 <em>Ifngr1<sup>-/-</sup></em>: CD45.1 <em>Ifngr1<sup>+/+</sup></em>) using 10X Genomics platform.</strong></p> <p>The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell.</p> <p>Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.</p>
Single-cell RNA sequencing of Lymph node-infiltrating HSC-derived phagocytes of Ms4a3Ai14 using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.
<p><strong>Single-cell RNA sequencing of Lymph node-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE using 10X Genomics platform.</strong></p> <p>The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell.</p> <p>Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.