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1,773 results for “Supplementary data,”
Supplementary Table S1 (raw data) of "Filtration extraction method using microfluidic channel for measuring environmental DNA "
<p>Supplementary Table S1 (all raw data) of "Filtration extraction method using microfluidic channel for measuring environmental DNA ". Each data of the validation experiment; Experiment 1-4 was located in different sheets..</p>
Supplementary data to "Geometric morphometrics of bilateral asymmetry in Eunotia bilunaris (Eunotiales, Bacillariophyceae) as a tool for the quantitative assessment of teratogenic deviations in frustule shapes"
<p>The supplementary data consist of the files "data.txt" and "R_script.odt" including the landmark coordinates and the R script used for the analyses described in the paper submitted to Symmetry.</p> <p> </p>
Supplementary Table 1. Raw data of egg quality parameters for 990 egg samples with ATOL (Animal Trait Ontology for Livestock) descriptors, as function of hen age, pen no. and genotype in 15 replicates.
<p>Data table of egg quality parameters</p>
Supplementary data: Na2.4Al0.4Mn2.6O7 anionic redox cathode material for sodium ion batteries- a combined experimental and theoretical approach to elucidate its charge storage mechanism
<p>This data repository contains the output files of density-functional theory (DFT) calculations that were used for the paper "Na2.4Al0.4Mn2.6O7 anionic redox cathode material for sodium ion batteries- a combined experimental and theoretical approach to elucidate its charge storage mechanism". </p>
Supplementary Data for: Unique Transcriptomic Changes Underlie Hormonal Interactions During Mammary Histomorphogenesis in Female Pigs
<p>Successful lactation and the risk for developing breast cancer depend on growth and differentiation of the mammary gland (MG) epithelium that is regulated by ovarian steroids (17beta-estradiol [E] and progesterone [P]) and pituitary-derived prolactin (PRL). Given that the MG of pigs share histomorphogenic features present in the normal human breast, we sought to define the transcriptional responses within the MG of pigs following exposure to all combinations of these hormones. Hormone-ablated female pigs were administered combinations of E, medroxyprogesterone 17-acetate (source of P), and either haloperidol (to induce PRL) or 2-bromo-a-ergocryptine. We subsequently monitored phenotypic changes in the MG including mitosis, receptors for E and P (ESR1 and PGR), level of phosphorylated STAT5 (pSTAT5), and the frequency of terminal ductal lobular unit (TDLU) subtypes; these changes were then associated with all transcriptomic changes. Estrogen altered the expression of ~20% of all genes that mostly associated with mitosis, whereas PRL stimulated elements of fatty acid metabolism and an inflammatory response. Several outcomes, including increased pSTAT5, highlighted the ability of E to enhance PRL action. Regression of transcriptomic changes against several MG phenotypes revealed 1,669 genes correlated with proliferation, among which 29 were E-inducible. Additional gene expression signatures were associated with TDLU formation and the frequency of ESR1 or PGR. These data provide a link between the hormone-regulated genome and phenome of the MG in a species having a complex histoarchitecture like that in the human breast, and highlight an underexplored synergy between the actions of E and PRL during MG development.</p>
Supplementary data to publication "Growth efficiency, intestinal biology, and nutrient utilization and requirements of black soldier fly (Hermetia illucens) larvae compared to monogastric livestock species: a review"
<p>The datasets provided in the excel file were used to generate Table 2 and Fig. 2 in the publication entitled "Growth efficiency, intestinal biology, and nutrient utilization and requirements of black soldier fly (Hermetia illucens) larvae compared to monogastric livestock species: a review" by Seyedalmoosavi et al., 2022 published in Journal of Animal Science and Biotechnology. https://doi.org/10.1186/s40104-022-00682-7</p>
Supplementary Raw Data JASN-2021-05-0680.R2
<p>Raw data from experimental procedures published in the paper "Decreased renal gluconeogenesis is a hallmark of chronic kidney disease"</p>
Supplementary data to "Alternative reproductive tactics are associated with sperm performance in invasive round goby from two different salinity environments"
<p>During male-male competition, evolution can favor alternative reproductive tactics. This often results in a dominant morph that holds a resource, such as a nest for egg laying, competes with a smaller sneaker morph that reproduces by stealing fertilizations. The salinity environment can influence male growth rates, e.g. via osmoregulatory costs, which in turn may influence the use of sneaker tactics for small males competing for mating opportunities. Salinity can also affect sperm directly; however, little is known of how salinity influences sneaker tactics through sperm performance. We sampled males of the invasive round goby (<i>Neogobius melanostomus</i>) from two environments, a freshwater river and a brackish estuary. This fish has two male morphs: nest-holding dark males and non-nest-holding light males. We examined the role of water salinity of 0, 8 and 16 on sperm performance and found that in estuarine males, a salinity of 0 reduced sperm velocity compared to a salinity of 8 and 16. Riverine males had low velocity in all salinities. Sperm viability also decreased by over 30 % in 0 salinity, compared to 8 and 16, for fish from both environments. Gobies produce ejaculate contents in specialized glands that could in theory shield sperm in an adverse environment. However, gland contents did not improve sperm performance in our tests. Body mass and age estimates indicate that riverine males invested more in somatic growth compared to estuarine males. Estuarine light morph males had a high enough gonadosomatic index to indicate sneaker tactics. We propose that when sperm performance is low, such as for the riverine males, sneaker tactics are ineffective, and will be selected against or phenotypically suppressed. Instead, we interpret the increased investment in somatic growth found in riverine males as a life-history decision that is advantageous when defending a nest in the next reproductive season.</p>
Supplementary data to: Acceleration of diverging runoff trends on the Third Pole
<p>This archive contains data produced for the study of “Acceleration of diverging runoff trends on the Third Pole (TP)”. For now, the data is password protected and only available to the Editor and Reviewers. And we commit to making the data publicly in the event of publication.</p> <p> </p> <p>The archive is organized in two major directories (“Shape_file” and “Data”).</p> <p> </p> <p><strong>1. The directory “Shape_file” </strong>includes two specific folders.</p> <p>(1) The folder “Mountain-basins_for_TP_rivers”, provides the shape files of the mountain-outlet basins for each of the 12 major TP rivers (Mekong, Salween, Brahmaputra, Ganges, Indus, Amu Darya, Syr Darya, Yellow, Yangtze, Tarim, Heihe, and Shule).</p> <p>(2) The folder “Three_climate_domains”, provides the shape files for the mountain-outlet basins (that we investigated in the study) in the TP's westerlies domain, westerlies-monsoon transition domain, and Indian monsoon domain, respectively.</p> <p> </p> <p><strong>2. In the directory “Data”</strong>, we provide the processed annual time-series of precipitation (<em>P</em>) anomaly, evapotranspiration (ET) anomaly, total water storage change (<em>delt_S</em>) anomaly, and runoff from 1960 to 2016 that covers the mountain basins of all the 12 major TP rivers.</p> <p>For more details, please refer to the document "Data_introduction.docx" in the rar file ("Data-202202.rar").</p>
Supplementary data for "A new species of Rhagoletis (Diptera: Tephritidae) from Switzerland..."
<p>Supplementary data file with the alignement of the seguences used in the paper by S. V. Korneyev et al. 2022. A new species of Rhagoletis (Diptera: Tephritidae) from Switzerland, with discussion of its relationships within the genus. <em>Zoodiversity</em>, 56(1)</p>
Supplementary data for "Pterosaur melanosomes support signalling functions for early feathers."
<p>Supplementary data for the manuscript entitled "Pterosaur melanosomes support signalling functions for early feathers."</p>
Supplementary data
<p>Supplementary data for manuscript entitled: Atovaquone: An Inhibitor of Oxidative Phosphorylation as Studied in Gynecologic Cancers.</p>
Supplementary Data for: Human pathogenic RNA viruses establish non-competing lineages by occupying independent niches
<p><strong>Supplementary Data</strong></p> <p><strong>Tables</strong></p> <p><strong>Table S1:</strong> Virus characteristics including abbreviation, family, order, tax id, sequence length threshold (for nearly complete genomes), vaccination status, mode of transmission, circulation (human or human/zoonotic), available treatment, and disease progression (acute or chronic).</p> <p><strong>Table S2:</strong> Sequence IDs of outgroup constituents.</p> <p><strong>Table S3:</strong> GISAID acknowledgements for the SARS-CoV-2 sequences used in this study.</p> <p><strong>Table S4:</strong> Summary of manual sequence curation indicating lab- or vaccine-related keywords used to prune sequences.</p> <p><strong>Table S5:</strong> Sequence IDs for EVA and H3N2 e10, e100, d10, and d100 subtrees.</p> <p><strong>Table S6:</strong> Sequence IDs for ML and GL lineages.</p> <p><strong>Table S7:</strong> Sequence IDs for the H3N2 “new” and “old” subtrees.</p> <p><strong>Table S8:</strong> Mutation rates (in units of nucleotide substitutions per site per year) and estimated dates for the last common ancestor of all tree/subtrees. Negative dates represent years prior to 0 CE.</p> <p><strong>Table S9:</strong> Mean dN/dS values.</p> <p><strong>Table S10:</strong> Yearly viral cases and generation time estimations (with references).</p> <p><strong>Table S11:</strong> Metadata including the sequence ID, host, date of isolation, location of isolation, and subtype.</p> <p><strong>Table S12:</strong> Overview of key parameters including number of GLs N, Ne, and MRCA for each virus species as well as the mean over all species.</p> <p><strong>Directories</strong></p> <p><strong>Alignments</strong> ORFeome alignments (excluding stop codons) with the exception of SARS-CoV-2.</p> <p><strong>Correlated Subtrees</strong> Subtrees representing all correlated-clades (genealogical lineages; GL) in Newick format.</p> <p><strong>Diversity TMRCA and Skyline Plots</strong> .png files.</p> <p><strong>e/d/n/o Subtrees</strong> EVA and H3N2 subtrees, evenly and diversely sampled as well as “early” and “late” subtrees for H3N2.</p> <p><strong>Genealogical Trees</strong> Including global topologies (.main), subtrees, and grafted trees (.grafted).</p> <p><strong>Maximally Diverse Subtrees:</strong> Genealogical trees sampled to contain the same number of leaves as each respective tree in the Simulated Trees directory.</p> <p><strong>ORF References</strong> The first and last nucleotide of each ORF in the reference sequence.</p> <p><strong>Redundancy Tables</strong> List of all redundant isolates and the corresponding representative in the ORFeome-unique alignment.</p> <p><strong>Reference Sequences</strong> Genbank page for all reference sequences.</p> <p><strong>Rooted Trees</strong> Global topologies for each virus.</p> <p><strong>Simulated Trees:</strong> Neutral models, based on Yule-Harding, for each virus.<br> Ultrametric Trees For each global topology.</p> <p><strong>Ultrametric Trees </strong>For each global topology.</p>
Supplementary scripts and data for Bastin et al.: Atlantic Equatorial Deep Jets in Argo Float Data, Journal of Physical Oceanography
<p>Analysis scripts used to obtain the results in the paper</p> <p>Bastin, S., M. Claus, P. Brandt and R. J. Greatbatch: Atlantic Equatorial Deep Jets in Argo Float Data. Submitted to Journal of Physical Oceanography.</p>
Supplementary data for PhD thesis of Noemi Montini
<p>The word file explains the tables in the excel file. That excel file contains raw data that is supplementary to several of the chapters in Noemi Montini's PhD thesis submitted to UCC March 2022.</p>
Supplementary data for 'Ferrofluid impregnation efficiency and its spatial variability in natural and synthetic porous media: Implications for magnetic pore fabric studies'
<p>Supplementary data for the manuscript 'Ferrofluid impregnation efficiency and its spatial variability in natural and synthetic porous media: Implications for magnetic pore fabric studies'</p>
Supplementary data and information for 'Electron-Beam-Induced Carbon Contamination in STEM-in-SEM: Quantification and Mitigation'
<p>This repository contains supplementary data and information for the journal article "Electron-beam-induced carbon contamination in STEM-in-SEM: Quantification and mitigation" (https://doi.org/10.1093/micmic/ozac003).</p> <p>It provides comprehensive documentation of the thickness evaluation procedure based on STEM images. The thickness evaluation procedure is packed into a PYTHON library that can run using the provided exemplary images. It can also be adapted and applied to other images and individual settings, as described in the documentation file PythonTDL_Documentation.pdf. K. Adrion prepared the library based on the scripts written by her and M. Hugenschmidt, which were used for evaluating contamination thicknesses in the before-mentioned publication and on a conference poster: https://doi.org/10.5445/IR/1000135526.</p>
Supplementary data as part of the article "The role of carbon capture, utilization and storage for economic pathways that limit global warming to below 1.5 °C" (https://doi.org/10.1016/j.isci.2022.104237).
<p>Data of the plots in Figure 1a and Figure 1b, showing, respectively, the incremental and the integrated global CO<sub>2</sub> emissions for the 1.5 °C-committed decarbonization pathways from IPCC (P1, P2, P3, and P4 pathways) and the one originally obtained in this work (Q pathway).</p>
Supplementary code and data for: Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE
<p>This repository contains code and data to reproduce the figures in the manuscript: Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE.</p> <p>Please refer to the readme in the repository. </p>
NOAA Extended Reconstructed SST V5 as Supplementary Data for Publication
<p>A global monthly sea surface temperature (SST) analysis from 1854 to the present derived from ICOADS data with missing data filled in by statistical methods.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.