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727 results for “molecular taxonomy”
FIGURE 1 in Molecular phylogeny of Onobrychis sect. Onobrychis (Fabaceae-Hedysareae) with insights into its taxonomy and character evolution
FIGURE 1. Fifty percent majority rule consensus tree resulting from Bayesian inference of the nrDNA ITS dataset. Numbers above branches are posterior probabilities (PP) and numbers below the branches are likelihood bootstrap values; values <50% are not shown.
FIGURE 2 in Molecular phylogeny of Onobrychis sect. Onobrychis (Fabaceae-Hedysareae) with insights into its taxonomy and character evolution
FIGURE 2. Fifty percent majority rule consensus tree resulting from Bayesian inference of the combined plastid dataset (ndhF-rlp32, rpl32-trnL (UAG) and trnG (UCC) -trnS (GCU)). Numbers above branches are posterior probabilities (PP) and numbers below the branches are likelihood bootstrap values; values <50% are not shown.
FIGURE 1 in What do molecular data and vibrational communication tell us about the taxonomy of the genus Tyrrhenoleuctra Consiglio, 1957 (Plecoptera: Leuctridae) in Spain?
FIGURE 1. Map of Spain (Canary Islands not included) showing the locations (S1-S6) of the studied populations. See material and methods section for the complete information on localities.
FIGURE 2 in What do molecular data and vibrational communication tell us about the taxonomy of the genus Tyrrhenoleuctra Consiglio, 1957 (Plecoptera: Leuctridae) in Spain?
FIGURE 2. COI maximum likelihood (ML) tree representing five clades of Tyrrhenoleuctra species and one outgroup species Leuctra fusca. Sequences in bold indicate sequences generated in the present study, while the other sequences were downloaded from Genbank. Number at nodes represent support values (bootstrap= 1000).
FIGURE 5 in What do molecular data and vibrational communication tell us about the taxonomy of the genus Tyrrhenoleuctra Consiglio, 1957 (Plecoptera: Leuctridae) in Spain?
FIGURE 5. Tyrrhenoleuctra hynesi sp. n. Tip of the holotype male abdomen in lateral view (A), dorsal view (B) and ventral view (C); tip of a paratype female abdomen in ventral view (D).
FIGURE 6 in Molecular phylogeny and taxonomy of the genus Nanocnide (Urticaceae) with particular attention to the Ryukyu Islands endemic N. lobata
FIGURE 6. The phylogenetic tree of Nanocnide compared to the key. The labels A, B and C on the tree branches correspond to the distinguishing morphologies in the key. The up and down of the labels also correspond to the order of the key. For example, the upper branch with the label A corresponds to the first key of A.
FIGURE 4. A in Molecular phylogeny and taxonomy of the genus Nanocnide (Urticaceae) with particular attention to the Ryukyu Islands endemic N. lobata
FIGURE 4. A photography of a staminate flower of N. japonica (left) and its hollow (right). The hollow is arrowed and edged by a broken line. (Japan, Chiba Pref., Katori, 28 March 2018.)
FIGURE 3. Genetic structure between N. lobata and N in Molecular phylogeny and taxonomy of the genus Nanocnide (Urticaceae) with particular attention to the Ryukyu Islands endemic N. lobata
FIGURE 3. Genetic structure between N. lobata and N. pilosa based on averaged MIG-seq data inferred using structure. The sample 1–4 and 5–9 correspond to N. lobata and N. pilosa. More precisely, the numbers correspond to the samples as follows: 1: R2. 2: R9. 3: R10. 4: R19. 5: R23. 6: KY18. 7: 33028. 8: H30528. 9: H30337.
FIGURE 2 in Molecular phylogeny and taxonomy of the genus Nanocnide (Urticaceae) with particular attention to the Ryukyu Islands endemic N. lobata
FIGURE 2. Genetic structure in Nanocnide based on averaged MIG-seq data inferred using structure. The samples 1–4, 5–9 and 10–34 correspond to N. lobata, N. pilosa and N. japonica, respectively. More precisely, the numbers correspond to the samples as follows: 1: R2. 2: R9. 3: R10. 4: R19. 5: R23. 6: KY18. 7: 33028. 8: H30528. 9: H30337. 10: Tai. 11: 602. 12: A1. 13: B2. 14: C1. 15: S2. 16: KY2. 17: KY25. 18: KY29. 19: TC2. 20: KO2. 21: KO7. 22: CH4. 23: CH10. 24: CH25. 25: CH29. 26: CH33. 27: NG2. 28: HK2. 29:HK9. 30: TH2. 31: TH16. 32: 827. 33: H30608. 34: L150039.
FIGURE 5. A in Molecular phylogeny and taxonomy of the genus Nanocnide (Urticaceae) with particular attention to the Ryukyu Islands endemic N. lobata
FIGURE 5. A seed and its mucilage of N. japonica on a tip of tweezers (Cultivated, originally collected from Japan, Tochigi Pref. Mt. Futamata on 14 April 2018.)
FIGURE 1 in Molecular phylogeny and taxonomy of the genus Nanocnide (Urticaceae) with particular attention to the Ryukyu Islands endemic N. lobata
FIGURE 1. The obtained phylogenetic trees. Left: The ML tree of ITS sequence for Nanocnide. The identical genotypes are collapsed at the right side of a triangular. Numbers near a branch stand for ML bootstrap value, MP bootstrap value, and BI posterior probability of the branch. The support in MP tree is based on the most frequent values of all the multiple MP trees. Hyphens mean the branch did not appear in the corresponding analysis. Samples with identical sequences are collapsed and listed in the same line, but a triangle on a tip of the tree shows a single sequence corresponding to the samples on listed in two lines. The sample name abbreviations for the samples from GenBank are listed in Table 3. Right: The ML tree of Nanocnide based on MIG-seq. Numbers below a branch stand for bootstrap values (1000 times) for min_samples_locus = 1 / min_samples_locus = 4. Bootstrap values less than 50 in both parameters were omitted. Abbreviation after the sample locality shows the country of the locality. (C): Mainland China, (J): Japan and (T): Taiwan.
FIGURE 8. X in Morphological and molecular characterization of the Makran Glossogobius cf. giuris (Teleostei: Gobiidae) and the Glossogobius giuris species complex taxonomy
FIGURE 8. X-ray and caudal-fin skeleton (drawing) of Glossogobius cf. giuris from the Sarbaz River, Makran River System (ZM-CBSU N1064, 101.5 mm SL). Terminology is given in the text.
FIGURE 7 in Morphological and molecular characterization of the Makran Glossogobius cf. giuris (Teleostei: Gobiidae) and the Glossogobius giuris species complex taxonomy
FIGURE 7. Sensory papillae lines and head pores of Glossogobius cf. giuris based on ZM-CBSU G1-MK, 103 mm SL, from the Sarbaz River, Markarn River System (A, lateral view; B, ventral view). Terminology is given in the text.
FIGURE 6 in Morphological and molecular characterization of the Makran Glossogobius cf. giuris (Teleostei: Gobiidae) and the Glossogobius giuris species complex taxonomy
FIGURE 6. Uncatalogued live specimens of Glossogobius cf. giuris, collected from the Sarbaz River, near Rask, Makran River System. Photos by A. Jouladeh-Roudbar.
FIGURE 3. A in Morphological and molecular characterization of the Makran Glossogobius cf. giuris (Teleostei: Gobiidae) and the Glossogobius giuris species complex taxonomy
FIGURE 3. A) ML phylogeny of the genus Glossogobius based on the COI dataset (226 individuals plus one outgroup), showing the phylogenetic placement of the Makran haplotypes. The numbers before and after the slash at the nodes represent BI posterior probability (PP) and ML bootstrap (BP) values, respectively. B) Updated geographical distributions of the four species/lineages in the G. giuris species complex (G. giuris B, G. giuris C, G. laticeps, and G. tenuiformis) based on the COI dataset.
FIGURE 1 in Morphological and molecular characterization of the Makran Glossogobius cf. giuris (Teleostei: Gobiidae) and the Glossogobius giuris species complex taxonomy
FIGURE 1. Distribution of Glossogobius cf. giuris (red lines: Jagin and the Sarbaz-Kaju-Bahu Kalat river system) in the Makran River System (grey area), north-western Indian Ocean based on Jouladeh-Roudbar et al. (2020). Sampling sites along the Sarbaz River: 1, Pishin Dam; 2, Jakigur; 3, near Rask; 4, Sarbaz. The map was originally designed in DIVA-GIS 7.5 (www. diva-gis.org).
FIGURE 5 in Morphological and molecular characterization of the Makran Glossogobius cf. giuris (Teleostei: Gobiidae) and the Glossogobius giuris species complex taxonomy
FIGURE 5. MMDs for the species/lineages in the Glossogobius giuris species complex. Glossogobius tenuiformis was excluded due to small sample size.
Figure 8 in Molecular phylogeny and taxonomy of three anaerobic plagiopyleans (Alveolata: Ciliophora), retrieved from two geographically distant localities in Asia and North America
Figure 8. Maximum likelihood (ML) tree inferred from the small subunit rRNA gene sequences, revealing the positions of the 21 newly obtained sequences (red font). Numbers near branches indicate ML bootstrap values and BI posterior probabilities. Black circles represent full support (ML/BI, 100/1.00) in both analyses. Disagreements in topology between ML and BI are marked with asterisks. The scale bar corresponds to 2 changes per 100 nucleotide positions. Abbreviation: sp = species.
Figure 4 in Molecular phylogeny and taxonomy of three anaerobic plagiopyleans (Alveolata: Ciliophora), retrieved from two geographically distant localities in Asia and North America
Figure 4. Drawings of Plagiopyla rariseta from life (A–C, E) and aħer protargol staining (D, F–I). A, ventral view of a representative individual, arrowheads show caudal cilia. B, C, resting (B) and extruded (C) extrusomes. D, dorsal view, showing position of striated band, cytoproct (red arrow), dense ciliary row (black arrow) and contractile vacuole pores (arrowheads). E, different body shapes. F, details of oral region, showing oral opening and buccal cavity. G, details of dikinetids on right front side of striated band. H, I, ventral (H) and dorsal (I) views of the holotype to show somatic and oral kineties, arrow indicates striated band, arrowhead shows dense ciliary row, red kinetosomes indicate dikinetids on right front side of striated band. Abbreviations: CV, contractile vacuole; Ex, extrusomes; SB, striated band. Scale bars: 30 μm (A, E, H, I), 25μm (C).
Figure 5 in Molecular phylogeny and taxonomy of three anaerobic plagiopyleans (Alveolata: Ciliophora), retrieved from two geographically distant localities in Asia and North America
Figure 5. Photomicrographs of Plagiopyla rariseta from life (A–C, H–O) and aħer protargol staining (D–G). A, B, ventral views of different individuals, showing different body shape. C, extruded extrusomes (arrowheads). D, details of oral opening and buccal cavity tube (arrowhead). E, macronucleus and slightly enveloped micronucleus (arrowhead). F, G, ventral (F) and dorsal (G) views of the holotype to show somatic and oral kineties, arrowhead shows dense ciliary row. H, I, oral region, showing buccal cavity (arrowheads) under different focal planes. J, ventral view of a slightly compressed cell. K, posterior region of cell, arrowhead indicates contractile vacuole, arrow marks cortical ridges. L, curved extrusomes (arrowheads) under the cortex. M, posterior end of cell, showing caudal cilia (arrowhead). N, contractile vacuole pores (arrowheads). O, dorsal view, arrowhead shows striated band. Scale bars: 30 μm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.