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Supplementary Table S1 in Phylogenetic notes on the rare Mediterranean digger wasp Psenulus fulvicornis (Schenck, 1857) (Hymenoptera: Crabronidae) new to Switzerland
Supplementary Table S1 Collection information for sequences produced in our lab. Sequences acquired from GenBank (GB) or the Barcode of Life Data System (BOLD) are listed below.
Supplementary Figure S1 in Phylogenetic notes on the rare Mediterranean digger wasp Psenulus fulvicornis (Schenck, 1857) (Hymenoptera: Crabronidae) new to Switzerland
Supplementary Figure S1 Phylogenetic tree representing species of the wasp genus Psenulus (Kohl, 1897). Bayesian analysis was based on cox1 sequences (201 polymorphic nucleotides out of 637 sites), including 37 Psenulus and five outgroup specimens [Diodontus minutus (Fabricius, 1793) and Pemphredon lethifer (Shuckard, 1837)]. The analysis was performed with the substitution model GTR+G, estimated with jModelTest 0.1.1, and run in two chains with 5 million generations each. After discarding the burn-in, 37,501 trees were sampled of a total of 100,002 trees from both chain files. Bifurcations with posterior probabilities of <0.9 were collapsed, except for branches with ambiguous Maximum Likelihood and Bayesian results (thick grey bifurcations). All thick black branches represent posterior probabilities of at least 0.99. Specimens are labelled with the specimen ID, the GenBank accession number or the Barcode Index Number BIN of the BOLD System.
Fig. 4. Cox1 polymorphic sites within a 561 in Phylogenetic notes on the rare Mediterranean digger wasp Psenulus fulvicornis (Schenck, 1857) (Hymenoptera: Crabronidae) new to Switzerland
Fig. 4. Cox1 polymorphic sites within a 561 bp alignment of the P. fulvicornis-Group. Vertical numbers indicate the position of the segregation site in the alignment. Of 561 sites 539 were invariable, 10 singleton variable, and 12 parsimony informative sites. At position 543 of the alignment were three mutations, and replacements at the positions 178 and 472 were nonsynonymous (asterisks). Specimens are arranged according to their genetic distance. The Caucasian specimen PSC-11 was divergent from P. fulvicornis and P. schencki but it was similarly distant to both. Specimens are labelled with the specimen ID, the GenBank accession number or the Barcode Identification Number of the BOLD System (see supplementary Table S1). Rectangles include specimens belonging to the clades I–VI in the phylogenetic analysis (Fig. 5).
Fig. 3 in Phylogenetic notes on the rare Mediterranean digger wasp Psenulus fulvicornis (Schenck, 1857) (Hymenoptera: Crabronidae) new to Switzerland
Fig. 3. Main discriminant characters between females of Psenulus fulvicornis (Schenck, 1857) and P. schencki (Tournier, 1889). (A) Propodeal surface and (B) pygidial area of P. fulvicornis from the City of Zurich, Switzerland (D. Frey & A. Zanetta leg.; M. Řiha det.; R. Neumeyer conf.; WSL coll; GenBank accession Nr. KY039438). (C) Propodeal surface and (D) pygidial area of P. schencki from the City of Zurich (25.05.2015; D. Frey & A. Zanetta leg.; M. Řiha det.; R. Neumeyer conf.; WSL coll; GenBank accession Nr. KY039439). In P. fulvicornis, the lateral surface of the propodeum (A) has short crosswise carinas which gives the texture coarse appearance. This character is unique among females of Central European Psenulus. In P. schencki such crosswise carinas are lacking (C), and the texture is finer. The pygidal area is longer and broader in P. fulvicornis (B) than in P. schencki (D), but this character can be difficult to observe in certain specimens.
Fig. 2 in Phylogenetic notes on the rare Mediterranean digger wasp Psenulus fulvicornis (Schenck, 1857) (Hymenoptera: Crabronidae) new to Switzerland
Fig. 2. (A) Female Psenulus fulvicornis (Schenck, 1857) from the City of Zurich, Switzerland (D. Frey & A. Zanetta leg.; M. Řiha det.; R. Neumeyer conf.; WSL coll; GenBank accession Nr. KY039438). (B) Female Psenulus schencki (Tournier, 1889) from the City of Zurich (25.05.2015; D. Frey & A. Zanetta leg.; M. Řiha det.; R. Neumeyer conf.; WSL coll; GenBank accession Nr. KY039439). Note the (barely visible) oblong spot at the lower end of the mid-tibia, which is a unique and shared character for both taxa among Central European Psenulus species (Jacobs, 2007).
Supplementary material 1 from: Sanchez A, Chittaro Y, Germann C, Knížek M (2020) Annotated checklist of Scolytinae and Platypodinae (Coleoptera, Curculionidae) of Switzerland. Alpine Entomology 4: 81-97. https://doi.org/10.3897/alpento.4.50440
File S1.
Figure 1 from: Sanchez A, Chittaro Y, Germann C, Knížek M (2020) Annotated checklist of Scolytinae and Platypodinae (Coleoptera, Curculionidae) of Switzerland. Alpine Entomology 4: 81-97. https://doi.org/10.3897/alpento.4.50440
Figure 1 Habitus of six rare species of Scolytinae present in Switzerland: A) Pityophthorus buyssoni buyssoni, B) Taphrorychus siculus, C) Thamnurgus kaltenbachii, D) Polygraphus subopacus, E) Scolytus kirschii kirschii, F) Xyleborus cryptographus (Photos A. Sanchez).
Figure 3 from: Rizzoli A, Battelli R, Conedera M, Jermini M (2020) First record of Erasmoneura vulnerata Fitch, 1851 (Hemiptera, Cicadellidae, Typhlocybinae) in Switzerland. Alpine Entomology 4: 151-156. https://doi.org/10.3897/alpento.4.53967
Figure 3 Erasmoneura vulnerata. Dorsal (A) and ventral (B) view of imago. Dorsal (C) and ventral (D) view of nymph. The real proportions were not retained.
Figure 2 from: Rizzoli A, Battelli R, Conedera M, Jermini M (2020) First record of Erasmoneura vulnerata Fitch, 1851 (Hemiptera, Cicadellidae, Typhlocybinae) in Switzerland. Alpine Entomology 4: 151-156. https://doi.org/10.3897/alpento.4.53967
Figure 2 Foliage lesions and Erasmoneura vulnerata excrement. A Leaf lesions, excrement and specimens of E. vulnerata. B Details of leaf lesions and excrement left by E. vulnerata. Photographs taken in Bellinzona, Switzerland, 46.19212 N, 9.02190 E, 15 July 2019.
Figure 1 from: Rizzoli A, Battelli R, Conedera M, Jermini M (2020) First record of Erasmoneura vulnerata Fitch, 1851 (Hemiptera, Cicadellidae, Typhlocybinae) in Switzerland. Alpine Entomology 4: 151-156. https://doi.org/10.3897/alpento.4.53967
Figure 1 Study area and monitoring design. Green area: vineyard area in Canton Ticino; circles: experimental plots; black dots: Erasmoneura vulnerata presence.
Figure 2 from: Wermelinger B, Schneider Mathis D, Knížek M, Forster B (2020) Tracking the spread of the northern bark beetle (Ipsduplicatus [Sahlb.]) in Europe and first records from Switzerland and Liechtenstein. Alpine Entomology 4: 179-184. https://doi.org/10.3897/alpento.4.53808
Figure 2 Map of European countries, with the corresponding year of the first record of Ips duplicatus (* see Table 2 for dates in individual regions of Germany).
Figure 1 from: Wermelinger B, Schneider Mathis D, Knížek M, Forster B (2020) Tracking the spread of the northern bark beetle (Ipsduplicatus [Sahlb.]) in Europe and first records from Switzerland and Liechtenstein. Alpine Entomology 4: 179-184. https://doi.org/10.3897/alpento.4.53808
Figure 1 Lateral view of a male Ips duplicatus showing the characteristic spines 2 and 3 on its declivity (photo: G. Casciano, WSL).
Effect of glacial/interglacial recharge conditions on flow of meteoric water through deep orogenic faults: insights into the geothermal system at Grimsel Pass, Switzerland
<p>This repository contains all files needed to run the base case simulation with PFLOTRAN. The input file pflotran.in provides information about the data sources as annotations. .</p>
Figure 11 from: Selz OM, Dönz CJ, Vonlanthen P, Seehausen O (2020) A taxonomic revision of the whitefish of lakes Brienz and Thun, Switzerland, with descriptions of four new species (Teleostei, Coregonidae). ZooKeys 989: 79-162. https://doi.org/10.3897/zookeys.989.32822
Figure 11 Types of the Lake Constance species, Switzerland ACoregonus gutturosus, non-type, NMBE-1076232 (Eawag-248–1), 250 mm, sex unknown, preserved specimen BCoregonus arenicolus, holotype, 296 mm, NMBE-1076223 (Eawag-239–1), sex unknown, preserved specimen CCoregonus macrophthalmus, syntype, MHNG-716.052, 215 mm, sex unknown, preserved specimen DCoregonus wartmanni, non-type, NMBE-1076206, 301 mm, female, preserved specimen. The white scale (1cm) below each fish acts as a reference for the actual size of the specimen.
Supplementary material 1 from: Selz OM, Dönz CJ, Vonlanthen P, Seehausen O (2020) A taxonomic revision of the whitefish of lakes Brienz and Thun, Switzerland, with descriptions of four new species (Teleostei, Coregonidae). ZooKeys 989: 79-162. https://doi.org/10.3897/zookeys.989.32822
Tables S1-S8, Figures S1-S11
Figure 12 from: Selz OM, Dönz CJ, Vonlanthen P, Seehausen O (2020) A taxonomic revision of the whitefish of lakes Brienz and Thun, Switzerland, with descriptions of four new species (Teleostei, Coregonidae). ZooKeys 989: 79-162. https://doi.org/10.3897/zookeys.989.32822
Figure 12 Illustrations of specimens of each species from Lake Thun. From top to bottom: Coregonus alpinus: non-type, NMBE-1077244, 343 mm, male; Coregonus steinmanni: paratype, NMBE-1077218, 289.5 mm, male; Coregonus acrinasus: paratype, NMBE-1077270, 270 mm, male; Coregonus fatioi: nontype, NMBE-1077138, 267 mm, male; Coregonus albellus: non-type, NMBE-1077188, 215 mm, male; Coregonus profundus: non-type, Eawag-123850, 195 mm, male. The black scale (1cm) below each fish acts as a reference for the actual size of the specimen.
Figure 1 from: Selz OM, Dönz CJ, Vonlanthen P, Seehausen O (2020) A taxonomic revision of the whitefish of lakes Brienz and Thun, Switzerland, with descriptions of four new species (Teleostei, Coregonidae). ZooKeys 989: 79-162. https://doi.org/10.3897/zookeys.989.32822
Figure 1 Principal Component Analysis showing that the types of the previously described species C. alpinus, C. albellus and C. fatioi (type locality: Lake Thun) lie within or adjacent to the ranges of the contemporary species of Lake Thun A, B shape PCA of the first vs. the second or third PC-axes explain together 70.05% of the variation in shape and are based on a subset (Suppl. material 1: Table S1) of 30 out of a total of 48 measured linear morphological characters (Table 1), since the type material lacked certain characters. Name-bearing types of the formerly described species are highlighted with enlarged symbols in the plots. The proportion of variance explained by each shape PC is given in brackets in the axis legend. PC-loadings and amount of shape variation explained by size are reported in Suppl. material 1: Table S1.
Figure 10 from: Selz OM, Dönz CJ, Vonlanthen P, Seehausen O (2020) A taxonomic revision of the whitefish of lakes Brienz and Thun, Switzerland, with descriptions of four new species (Teleostei, Coregonidae). ZooKeys 989: 79-162. https://doi.org/10.3897/zookeys.989.32822
Figure 10 Coregonus acrinasus, Lake Thun, Switzerland A holotype, NMBE-1077271, Lake Thun, 239.5 mm SL, male, freshly caught specimen B, C holotype, NMBE-1077271, preserved specimen D paratype, NMBE-1077270, Lake Thun, 270 mm SL, male, freshly caught specimen E paratype, NMBE-1077279, Lake Thun, 234 mm SL, male, freshly caught specimen. The white scale (1cm) below each fish acts as a reference for the actual size of the specimen.
Fig. 3 in First records of Edwardsiana sociabilis (Ossiannilsson, 1936) and Laburrus pellax (Horváth, 1903) (Hemiptera, Auchenorrhyncha: Cicadellidae) in Switzerland
Fig. 3. Laburrus pellax (Horváth, 1903). Photograph by Gernot Kunz.
Fig. 1 in First records of Edwardsiana sociabilis (Ossiannilsson, 1936) and Laburrus pellax (Horváth, 1903) (Hemiptera, Auchenorrhyncha: Cicadellidae) in Switzerland
Fig. 1. Edwardsiana sociabilis (Ossiannilsson, 1936). Photograph by Gernot Kunz.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.