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695
datasets available to search
ShareScore release 0.7.1
Dataset results
695 results for “topologies”
Long-distance association of topological boundaries through nuclear condensates
GEO Series GSE195566. Homo sapiens. 44 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
A single 3D chromatin compartment in amphioxus Hox cluster suggests a stepwise evolutionary origin for vertebrate Hox bimodal regulatory topologies
GEO Series GSE68737. Danio rerio; Branchiostoma lanceolatum. 74 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
An increase in negative supercoiling in bacteria reveals topology-reacting gene clusters and a homeostatic response mediated by the DNA topoisomerase I gene [RNA-Seq]
GEO Series GSE77748. Streptococcus pneumoniae R6. 6 samples. Type: Expression profiling by high throughput sequencing.
Two unrelated distal genes activated by a shared enhancer benefit from localizing inside the same small topological domain
GEO Series GSE274836. Homo sapiens. 97 samples. Type: Other; Expression profiling by high throughput sequencing.
Engineering topology and kinetics of sucrose metabolism in Saccharomyces cerevisiae for improved ethanol yield
GEO Series GSE30535. Saccharomyces cerevisiae. 16 samples. Type: Expression profiling by array.
Reconstruction of dynamic regulatory networks reveals signaling-induced topology changes associated with germ layer specification
GEO Series GSE177051. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Chromatin topology and the timing of enhancer function at the HoxD locus [RNA-seq]
GEO Series GSE154188. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Condensin-Driven Remodeling of X-Chromosome Topology during Dosage Compensation
GEO Series GSE59716. Caenorhabditis elegans. 13 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [III]
GEO Series GSE138645. Mus musculus. 272 samples. Type: Other.
Long-distance association of topological boundaries through nuclear condensates (PRO-Seq)
GEO Series GSE195563. Homo sapiens. 4 samples. Type: Other.
Chromatin Topology Reorganization and Transcription Repression by PML/RARα in Acute Promyeloid Leukemia (RNA-seq)
GEO Series GSE142198. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Sox2-Evf2 lncRNA mechanisms of chromosome topological control in developing forebrain
GEO Series GSE164301. Mus musculus. 14 samples. Type: Other.
Argonaute2 and LaminB repress transcription by controlling RNA Pol II recruitment and chromatin topology in Drosophila melanogaster (4C-Seq)
GEO Series GSE95847. Drosophila melanogaster. 6 samples. Type: Other.
Two unrelated distal genes activated by a shared enhancer benefit from localizing inside the same small topological domain (4C).
GEO Series GSE274831. Homo sapiens. 90 samples. Type: Other.
Stag1 and Stag2 regulate cell fate decisions in hematopoiesis through non-redundant topological control [I]
GEO Series GSE134583. Mus musculus. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Topologically Associating Domain Boundaries are Required for Normal Genome Function
GEO Series GSE172089. Mus musculus. 89 samples. Type: Expression profiling by high throughput sequencing; Other.
Disruptions of Topological Chromatin Domains Causes Pathogenic Rewiring of Gene-Enhancer Interactions [4C-Seq-mouse]
GEO Series GSE66379. Mus musculus. 15 samples. Type: Other.
A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs (ChIP-Seq)
GEO Series GSE45456. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
SMARCB1 loss creates patient-specific MYC topologies that drive malignant rhabdoid tumor growth [Hi-C]
GEO Series GSE218113. Homo sapiens. 2 samples. Type: Other.
Epigenetic maintenance of topological domains in the rearranged gibbon genome [ChIP-seq]
GEO Series GSE115064. Nomascus leucogenys. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.