Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
6,383
datasets available to search
ShareScore release 0.9.0
Dataset results
6,383 results for “isolates”
FIGURE 2 in New cyanobacterium Aliterella vladivostokensis sp. nov. (Aliterellaceae, Chroococcidiopsidales), isolated from temperate monsoon climate zone (Vladivostok, Russia)
FIGURE 2. ML tree showing phylogenetic position of the new species A. vladivostokensis based on 16S rRNA gene sequence data (GTR+I+G model). Support [ML/BI, (BP) ≥ 50% and (PP) ≥ 0.95] are given above/below the branches. Branches with 100% BP, 1.00 PP and sequences obtained for this study are shown in boldface. Scale bar – substitutions per nucleotide position.
FIGURE 2 in Morphological and phylogenetical analyses of pathogenic Hypomyces perniciosus isolates from Agaricus bisporus causing wet bubble disease in China
FIGURE 2 Maximum likelihood tree based on analysis of the nrLSU sequence data with Trichoderma aureoviride as the outgroup.
Figure 6 in Geographic isolation and human-assisted dispersal in land snails: a Mediterranean story of Helix borealis and its relatives (Gastropoda: Stylommatophora: Helicidae)
Figure 6. Schematic representation of three alternative dating scenarios for the Mediterranean clade. A, a tree calibrated by setting the mean uncorrelated relaxed clock rate to 0.02 substitutions per site per million years; B, C, alternative palaeogeographic calibrations based on the Messinian Salinity Crisis with the associated marine regression. Full black circles mark the nodes used as calibration; in B multiple nodes are marked since the dating scenario assumes all of these splits to occur during the shaded period at the latest. The shaded ranges depict (part of) the uncertainty associated with the calibration: B, the duration of the Messinian Salinity Crisis; C, the time during which the Mid-Aegean Trench formed. Outgroup was removed for plotting.
Figure 3 in Geographic isolation and human-assisted dispersal in land snails: a Mediterranean story of Helix borealis and its relatives (Gastropoda: Stylommatophora: Helicidae)
Figure 3. Phylogeny of the major mitochondrial clades of the Mediterranean clade of Helix inferred from a concatenated alignment of partial mitochondrial COI and 16S gene sequences. A, neighbour-net network; B, maximum likelihood tree. Branch labels in B indicate SH-aLRT support values, standard bootstrap proportions from 1000 pseudoreplicates, and posterior probabilities from a Bayesian analysis, respectively.
Fig. 1. 16S in Latilactobacillus fragifolii sp. nov., isolated from leaves of a strawberry plant (Fragaria x ananassa)
Fig. 1. 16S rRNA tree of the genus Latilactobacillus Reference genomes for five species of Latilactobacillus and the outgroup species Paralactobacillus selangorensis were determined from the Genome Taxonomy Database release 89 [18] and downloaded from the NCBI. The in-house-sequenced genome of strain AMBP162T was added. 16S rRNA sequences were extracted from whole genome sequences using Barrnap version 0.9 [29] and aligned with MAFFT version 7.407 [30]. A maximum-likelihood phylogeny was inferred with IQ-Tree version 1.6.12 [31], using a TN+F+I nucleotide substitution model. The tree was visualized with ggtree version 3.0.2 [32].
Fig. 3 in Salinadaptatus halalkaliphilus gen. nov., sp. nov., a haloalkaliphilic archaeon isolated from salt pond in Inner Mongolia Autonomous Region, China
Fig. 3. Maximum likelihood phylogenetic tree based on concatenated amino acid sequences of 122 single-copy conserved proteins. Bootstrap values (%) were based on 1000 replicates and shown with more than 70% bootstrap support. Bar, 0.05 substitutions per amino acid position.
Fig. 1 in Colwellia mytili sp. nov., isolated from mussel Mytilus edulis
Fig. 1. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showing the positions of Colwellia mytili sp. nov. RA2- 7T, the type strains of other species of the genus Colwellia and representatives of some other related taxa. Bootstrap values (expressed as percentages of 1000 replications)>50 % are shown at branching points. Filled circles indicate that the corresponding nodes were also recovered in the trees generated with the maximum-likelihood and maximum-parsimony algorithms. Pseudomonas aeruginosa DSM 50071T (GenBank accession number X06684) was used as an outgroup. Bar, 0.01 substitutions per nucleotide position.
Fig. 1. Phylogenetic relationship derived from 16S rRNA gene sequences between strains A1T, B1T and H1T in Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs
Fig. 1. Phylogenetic relationship derived from 16S rRNA gene sequences between strains A1T, B1T and H1T and other related taxa of the family Comamonadaceae. The tree was reconstructed using the maximum-likelihood method based on 16S rRNA gene sequences. Bootstrap values greater than 80% are shown at branch points. Bar, 0.02 substitutions per nucleotide position.
Fig. 2 in Planococcus versutus sp. nov., isolated from soil
Fig. 2. Phylogenetic tree reconstructed by a neighbour-joining analysis based on 16S rRNA gene sequences, depicting the phylogenetic relationship of strain L10.15T to related type strains of the genus Planococcus. Bar, 0.005 changes per nucleotide position. Bootstrap values (%)>50 % from 1000 replicates are shown.
Distribution. From Senegal and Gambia to N Ethiopia and Eritrea, and S to Zambia;; isolated populations exist in S Gabon, W Republic of the Congo, and Angola. The Rift Valley in C Kenya and C Tanzania forms the E distributionallimit; distribution to the S is restricted by the Muchinga escarpment in Zambia. in Bovidae
Distribution. From Senegal and Gambia to N Ethiopia and Eritrea, and S to Zambia;; isolated populations exist in S Gabon, W Republic of the Congo, and Angola. The Rift Valley in C Kenya and C Tanzania forms the E distributionallimit; distribution to the S is restricted by the Muchinga escarpment in Zambia.
Distribution. DR Congo S to N Namibia and N Botswana, and S through Zimbabwe, S Mozambique (approximately S of Zambezi River), NE South Africa (including KwaZulu-Natal), and Swaziland; an isolated population is found in S Gabon. No studies have attempted to distinguish the exact geographical range of R. arundinum from that of the Zambian Reedbuck (R. occidentalis) where the two populations meet. in Bovidae
Distribution. DR Congo S to N Namibia and N Botswana, and S through Zimbabwe, S Mozambique (approximately S of Zambezi River), NE South Africa (including KwaZulu-Natal), and Swaziland; an isolated population is found in S Gabon. No studies have attempted to distinguish the exact geographical range of R. arundinum from that of the Zambian Reedbuck (R. occidentalis) where the two populations meet.
FIGURE 2 in Trichoderma bombaxalis sp. nov., isolated from rhizosphere soils of Lycium barbarum
FIGURE 2. Trichoderma bombaxalis (CGMCC 3.20851). Cultures at 25 °C after 7 days (A. on PDA, B. on SNA, C. on CMD). Cultures at 30 °C after 7 days (E. on PDA, F. on SNA, G. on CMD). D, H, I, J. Conidia and phialides. K, L. Conidia. Scale bars: 10 µm.
Distribution. Found in isolated populations in Liberia, Cameroon, Equatorial Guinea, NW Gabon, W Republic of the Congo, SW Central African Republic, and N DR Congo; may also occur in W Uganda. in Anomaluridae
Distribution. Found in isolated populations in Liberia, Cameroon, Equatorial Guinea, NW Gabon, W Republic of the Congo, SW Central African Republic, and N DR Congo; may also occur in W Uganda.
Distribution. E & S South Africa and W Swaziland, with isolated records from extreme S in Nesomyidae
Distribution. E & S South Africa and W Swaziland, with isolated records from extreme S DR Congo, NW Zambia, N Botswana, NE Namibia (Caprivi Strip), and C Mozambique.
Subspecies and Distribution. P.s. sericeus Thomas, 1907 — E New Guinea Central Range (E of 143°E). P s. occidentalis Menzies & Pernetta, 1986 — W New Guinea Central Range (W of 143°E). An additional isolated population was recently documented on the outlying volcanic peak of Mt Bosavi in SC Papua New Guinea. in Phalangeridae
Subspecies and Distribution. P.s. sericeus Thomas, 1907 — E New Guinea Central Range (E of 143°E). P s. occidentalis Menzies & Pernetta, 1986 — W New Guinea Central Range (W of 143°E). An additional isolated population was recently documented on the outlying volcanic peak of Mt Bosavi in SC Papua New Guinea.
Distribution. Patchily distributed in WC Angola, SE DR Congo, NW & E Zambia, and Malawi, also in isolated localities in E & S Zambia, N Botswana, and possibly Namibia. Records from Rwanda and N Tanzania might be dubious. in Pteropodidae
Distribution. Patchily distributed in WC Angola, SE DR Congo, NW & E Zambia, and Malawi, also in isolated localities in E & S Zambia, N Botswana, and possibly Namibia. Records from Rwanda and N Tanzania might be dubious.
Isolated limb perfusion and immunotherapy in the treatment of in-transit melanoma metastases
<p><strong><span>Background:</span></strong><span> Isolated limb hyperthermic-antiblastic perfusion (ILP) was the most effective local treatment for advanced in-transit melanoma, but the advent of modern effective immunotherapy (IT) such as immune checkpoint inhibitors has changed the treatment landscape. <strong>Methods:</strong> This study evaluated the role of the association between ILP and IT in the treatment of locally advanced unresectable melanoma, in particularly in relation to modern systemic therapies. We analyzed 187 consecutive patients who were treated with ILP (melphalan or melphalan associated with TNF-alpha) for advanced melanoma at the Veneto Institute of Oncology of Padua (Italy) and the Padua University Hospital (Italy) between June 1989 and September 2021. Overall survival (OS), disease specific survival (DSS), local disease-free survival (local DFS) and distant disease-free survival (distant DFS) were evaluated. Local toxicity was classified according to the Wieberdink scale and surgical complications according to the Clavien-Dindo classification. Response to locoregional therapy was evaluated during follow-up according to RECIST 1.1 criteria (Response Evaluation Criteria in Solid Tumor). <strong>Results</strong>: 99 patients were treated with ILP and 88 with IT+ILP. Overall response rate was 67% in both groups. At 36 months, OS was 43% in ILP group and 61% in ILP+IT group (p=0.02); DSS was 43% in ILP group and 64% in ILP+IT group (p=0.02); local DFS was 37% in ILP group and 53% in ILP+IT group (p=0.04); distant DFS was 33% in ILP group and 35% in ILP+IT group (p=0.40). Adjusting for age and lymph node involvement, receiving ILP+IT was associated with improved OS (p=0.01) and DSS (p=0.007) but not local DFS (p=0.13) and distant DFS (p=0.21). <strong>Conclusions:</strong> Our findings confirm the synergy between ILP and IT. ILP remains a valuable loco-regional treatment option in the era of effective systemic treatments. Further studies are needed to establish the optimal combination of loco-regional and systemic treatments, and address the best timing of this combination to obtain the highest local response rate</span>.</p>
Spotprent op het isolement van Groen van Prinsterer, 1866
<u>Source</u>: Europeana <br><u>4DCity URL</u>: <a href="https://4dcity.org/imgupload/1652523737.752.jpg">https://4dcity.org/imgupload/1652523737.752.jpg</a> <br><u>Original Image URL</u>: <a href="https://api.europeana.eu/thumbnail/v2/url.json?uri=https%3A%2F%2Flh3.googleusercontent.com%2FEuGznhwY_Vuo7TbRG0diuKJABt5BiIXVO3-EP1ytmCU0rh7MYwVe9JZxMTtv9w7zvFOO-8WgCFtHVWGiBSlH70J8eS6C%3Ds0&type=IMAGE">https://api.europeana.eu/thumbnail/v2/url.json?uri=https%3A%2F%2Flh3.googleusercontent.com%2FEuGznhwY_Vuo7TbRG0diuKJABt5BiIXVO3-EP1ytmCU0rh7MYwVe9JZxMTtv9w7zvFOO-8WgCFtHVWGiBSlH70J8eS6C%3Ds0&type=IMAGE</a> <br><br><u>Image-Metadata:</u><br>Filename: 1652523737.752.jpg<br>Image Dimensions: 400x299<br>Megapixels: 0.12 MP<br>Filesize: 17.60 KB<br>
First day at the COVID-19 isolation hotel
<u>Source</u>: Flickr <br><u>4DCity URL</u>: <a href="https://4dcity.org/imgupload/1665336829.9296.jpg">https://4dcity.org/imgupload/1665336829.9296.jpg</a> <br><u>Original Image URL</u>: <a href="https://live.staticflickr.com/65535/52407994562_3dac48c99d_m.jpg">https://live.staticflickr.com/65535/52407994562_3dac48c99d_m.jpg</a> <br><br><u>Image-Metadata:</u><br>Filename: 1665336829.9296.jpg<br>Image Dimensions: 171x240<br>Megapixels: 0.04 MP<br>Filesize: 23.06 KB<br>
Fig 3 in Whole-Genome Optical Mapping and Finished Genome Sequence of Sphingobacterium deserti sp. nov., a New Species Isolated from the Western Desert of China
Fig 3. Optical mapping of the Sphingobacterium deserti sp. nov. ZWT genomic DNA with BamHI. The large chromosome restriction map was generated by shotgun optical mapping. The outer circle depicts the consensus map; the inner circles indicate the contigs from which the consensus map was generated. Colors are arbitrarily assigned to homologous overlapping fragments. doi:10.1371/journal.pone.0122254.g003
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.