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2,373 results for “Platform”
Single-cell RNA sequencing of Bone Marrow-infiltrating HSC-derived phagocytes of Ms4a3Ai14 using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.
<p><strong>Single-cell RNA sequencing of Bone Marrow-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE using 10X Genomics platform.</strong></p> <p>The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell.</p> <p>Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.</p>
Single-cell RNA sequencing of Blood-infiltrating HSC-derived phagocytes of Ms4a3Ai14 using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.
<p><strong>Single-cell RNA sequencing of Blood-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE using 10X Genomics platform.</strong></p> <p>The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell.</p> <p>Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.</p>
Complementary molecular and visual sampling of fish on oil and gas platforms provides superior biodiversity characterisation
<p>Raw data output from Fish and Elasmobranch surveys on oil platforms in the Gulf of Thailand</p>
Raw data for the article "Tosyloxybenziodoxolone: A Platform for Performing the Umpolung of Alkynes in One-pot Transformations"
<p>Raw NMR and MS data for the article "Tosyloxybenziodoxolone: A Platform for Performing the Umpolung of Alkynes in One-pot Transformations" published in Organic Letters, DOI: </p> <p><a href="https://doi.org/10.1021/acs.orglett.1c03771">https://doi.org/10.1021/acs.orglett.1c03771</a></p> <p>The number of the folders correspond to compounds numbers in the article. All details concerning conditions and equipment for measurements can be found in the supporting information of the article.</p>
Data from: Can matrix structure affect animal navigation between fragments? A dispersal experiment using release platforms
<p>The persistence of species in fragmented landscapes relies on landscape connectivity and individuals' ability in dispersing among habitat patches. Accordingly, matrix structure can affect the orientation of dispersing individuals across the landscape. In this study, we measured the impact of matrix structure on the dispersal performance of the white-eared opossum (Didelphis albiventris). We released individuals in three types of matrix: bare field, corn crops and soybean crops, with distances of 30, 50 and 100 m to the nearest habitat patch. To test if the release height would affect the individuals' dispersal performance, we released animals from the ground and from 2 m high platforms. We released and tracked 14 individuals in bare field on the ground; 30 in corn crops, 22 on the ground and 8 on platforms; 17 on soybeans crop, 12 on the ground and 5 on platforms. The type of matrix influenced the perceptual range. Perceptual range was 100 m in bare field, 50 m in cornfield and less than 30 m in soybean field. The platforms only increased the perceptual range of individuals in the cornfield from 50 to 100 m. Visual and olfactory cues would cause this effect. We conclude that matrix structure affects dispersal performance, and that vertical elements of the matrix, such as scattered trees, may increase orientation in crop fields during inter-patch dispersal.</p>
Automated microbial library generation using the bioinformatics platform IDBac
<p>Data and code to reproduce analyses and figures </p>
FIGURE 15. Reteporella mediterranea Hass, 1948 in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 15. Reteporella mediterranea Hass, 1948 (MNCN 25.03/4316). A. Frontal view of the colony showing three fenestrae. B. Detail view of the branch showing zooids with frontal avicularia and ovicells (arrows). C. Close-up of zooids showing orifices with circular, suboral avicularia, a pair of oral spines and triangular, frontal avicularia. D. Dorsal view of the colony fragment. E. Triangular avicularium on the dorsal side. F. Circular avicularium on the dorsal side. Scale bars: A, 1 mm; B, 300 µm; C, 100 µm; D, 500 µm; E, 30 µm; F, 60 µm.
FIGURE 14. Lagenipora lepralioides Norman, 1868 in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 14. Lagenipora lepralioides Norman, 1868 (MNCN 25.03/4314). A. Colony growing on another bryozoan (Adeonellopsis aff. multiporosa). B. Some zooids with large frontal pores and well developed peristomes. C. Detail of the orifice. D. Close-up of a zooid with well-developed peristome (left) and a fertile zooid with ovicell (arrow). Scale bars: A, 400 µm; B, D, 200 µm; C, 50 µm.
FIGURE 10. Hemicyclopora admirabilis n in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 10. Hemicyclopora admirabilis n. sp. (Holotype: MNCN 25.03/4307). A. General view of the colony, growing on another bryozoan (Adeonellopsis distoma), showing fertile zooids with six oral spines and infertile zooids with eight spines. B. Detail of some zooids, one fertile zooid with complete ovicell and another at the initial stage of development (arrow). C. Detail of two fertile zooids with a complete kenozooidal ovicell and another at the initial stage of development (arrow). D. Detail of an orifice showing eight oral spines and a pair of condyles. Scale bars: A, 300 µm; B, C, 350 µm; D, 80 µm.
FIGURE 13 in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 13. Microporella funbio Ramalho & López-Fé, 2020 (MNCN 25.03/4312). A. General view of a colony growing on a rock fragment. B. Central zooid showing orifice with 6 spines, ascopore and triangular avicularia. C. Detail of some zooids, one of them with an incomplete ovicell. Scale bars: A, 500 µm; B, C, 200 µm.
FIGURE 12 in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 12. Terwasipora complanata (Norman, 1864) (MNCN 25.03/4283). A. General view of a colony fragment showing zooids with tubercles latero-proximal and distal to the orifice. B. General view of a fragment showing a group of zooids. C. Detail of a zooid showing an orifice with condyles, a pair of lateral-proximal oral tubercles and another tubercle developed above the orifice. Scale bars: A, B, 400 µm; C, 200 µm.
FIGURE 11 in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 11. Schizomavella (Schizomavella) aff. linearis (Hassall, 1841) (MNCN 25.03/4310). A. General view of a colony part showing fertile and infertile zooids. B. Detail view of the orifice. C. Detail of a suboral avicularium on the suboral umbo base, showing serrated rostrum. D. Detail of the distal part a fertile zooid showing a large ovicell with a proximal line of large pseudopores. Scale bars: A, 300 µm; B, 40 µm; C, 60 µm; D, 100 µm.
FIGURE 9. Escharella similis n in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 9. Escharella similis n. sp. (Holotype: MNCN 25.03/4302). A. General view of a colony growing on a shell fragment. B. Detail of some fertile zooids showing the eight persistent oral spines, small suboral umbo and ovicells with independent aperture (arrow shows the kenozooidal ovicell). C. Detail of an ancestrula with 8 + 5 spines and subsequent zooids with 8 oral spines. D. Basal view of the aperture of a zooid showing the lyrula (lower level) and suboral umbo (higher level), condyles absent. Scale bars: A, 1 mm; B, 300 µm; C, 200 µm; D, 80 µm.
FIGURE 8. Adeonellopsis aff. multiporosa Aristegui, 1985 in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 8. Adeonellopsis aff. multiporosa Aristegui, 1985 (MNCN 25.03/4298). A. General view of a colony fragment showing the bifurcation. B. Detail of the branch showing zooids arranged in longitudinal series and the curved distal peristome. C. Close-up of some zooids showing the suboral avicularium and spiraminal pores. D. Detail of a zooid showing the beaded convex proximal margin of the orifice, spiraminal pores, as well as some areolar pores. Scale bars: A, 800 µm; B, 300 µm; C, 200 µm; D, 100 µm.
FIGURE 7. Scrupocellaria aegeensis Harmelin, 1969 in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 7. Scrupocellaria aegeensis Harmelin, 1969 (MNCN 25.03/4293). A. General view of the branch showing complete zooids and bifurcation. B. General view of a branch showing complete zooids and some vibracular setae. C. Detail of a zooid showing spines (3:2), incomplete scutum, lateral avicularium and setae from de distal and lateral zooids. D. Dorsal view showing vibracular cystid, setae directing to the frontal face of the branch, and radicular pores. Scale bars: A, B, 300 µm; C, 70 µm; D, 200 µm.
FIGURE 6. Hincksina longispinosa Harmelin & d in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 6. Hincksina longispinosa Harmelin & d'Hondt, 1992a (MNCN 25.03/4291). A. General view of the colony showing zooids with spines around the opesia, ovicells and avicularia. B. General view of the colony showing zooids with spine bases around the opesia, interzooidal avicularia associated with ovicells and isolated avicularia (arrow). C. Detail of a fertile zooid showing avicularium directed transversely (associated to the ovicell) and longitudinally (arrow). D. Detail of a colony showing a fertile zooid and some spines. Scale bars: A, 500 µm; B, 400 µm; C, 200 µm; D, 100 µm.
FIGURE 5. A–D. Crassimarginatella solidula Hincks, 1880 in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 5. A–D. Crassimarginatella solidula Hincks, 1880 (MNCN 25.03/4287). A. General view of a colony with the ancestrula. B. Part of the colony showing zooids with prominent knobs. C. Close-up showing periancestrular zooids and ancestrula. D. Detail of the ancestrula (*). E, F. Chartella elongata Cook, 1968 (MNCN 25.03/4289). E. Part of the branch showing zooid delimitation and a bifurcation. F. Detail showing zooidal operculum and the distal avicularium. Scale bars: A, C, 200 µm; B, 300 µm; D, F, 100 µm; E, 1 mm.
FIGURE 4 in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 4. Crassimarginatella crassimarginata (Hincks, 1880) (MNCN 25.03/4285). A. General view of the colony. B. Detail showing an avicularium and a zooid with incomplete ovicell. C. Detail of a fertile zooid showing a complete ovicell. D. Detail of a fertile zooid showing an incomplete ovicell. Scale bars: A, 1 mm; B, D, 200 µm; C, 100 µm.
FIGURE 2. A. Image taken from a in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 2. A. Image taken from a ROV, of the seafloor in the vicinity of sampling tracks, at 107 m depth. B-E. Images of the samples on board. B. BV12, 112–120 m. C. BV13, 95–99 m. D. BV14, 96–100 m. E. BV15, 96 m.
FIGURE 3 in Preliminary account on the bryozoans of the Alboran platform (Western Mediterranean), with description of two new species
FIGURE 3. Callopora rylandi Bobin & Prenant, 1965 (MNCN 25.03/4281). A. General view of the colony. B. Detail of a fertile zooid showing flattened frontal spines and distal oral spines. C. Detail of a fertile zooid showing the most distal pair of frontal spines forming a bifurcate tip. D. Detail of the colony showing one ovicell, one autozooid and a small avicularium (arrow). E. Detail of a colony showing the ancestrula (asterisk) and subsequent zooids. Scale bars: A, 300 µm; B, C, 100 µm; D, 150 µm; E, 350 µm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.