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2,532 results for “at present”
Causes and importance of new particle formation in the present-day and pre-industrial atmospheres: supporting data
<p>Data presented in the manuscript "Causes and importance of new particle formation in the present-day and pre-industrial atmospheres" currently in review.</p> <p>Particle number concentrations (files with initial word "CCN" or "N3") have units of particles per cubic centimetre, calculated at ambient temperature and pressure. Files with initial word "solar" have units of percent. Ion production rates have units ion pairs per cubic centimetre per second.</p> <p>The simulation data presented here was generated with the GLOMAP aerosol model, https://www.see.leeds.ac.uk/research/icas/research-themes/atmospheric-chemistry-and-aerosols/groups/aerosols-and-climate/the-glomap-model/ running on a T42 grid.</p> <p>The manuscript associated with this data was written using results from the CLOUD experiment at CERN, and the author list is a subset of the CLOUD collaboration.</p> <p> </p> <p> </p>
LabbookDB Presentation - A Relational Framework for Laboratory Metadata
<p>LabbookDB is a relational database application framework for life sciences—providing an extendable schema and functions to conveniently add and retrieve information, and generate summaries. The core concept of LabbookDB is that wet work metadata commonly tracked in lab books or spreadsheets is more efficiently and more reliably stored in a relational database, and more flexibly queried. We overcome the flexibility limitations of designed-for-analysis spreadsheets and databases by building our schema around atomized physical object interactions in the laboratory (and providing plotting- and/or analysis-ready dataframes as a compatibility layer). We keep our database schema more easily extendable and adaptable by using joined table inheritance to manage polymorphic objects and their relationships. LabbookDB thus provides a wet work metadata storage model excellently suited for exploratory ex-post reporting and analysis, as well as a potential infrastructure for automated wet work tracking.</p>
Kappa matrices presented in "An EFT approach to baryon number violation: lower limits on the new physics scale and correlations between nucleon decay modes" arXiv:2312.13361
<p>In this archive we provide the kappa matrices introduced in Sec 2.4 of our paper <em>An EFT approach to baryon number violation: lower limits on the new physics scale and correlations between nucleon decay modes</em> <a href="https://arxiv.org/abs/2312.13361">2312.13361</a>, also <a href="https://link.springer.com/article/10.1007/JHEP07(2024)004">published in JHEP</a>. These are the numerical values that are presented as matrix plots in Appendix C. Here they are packaged into CSV files, whose first row is the row/column label.</p> <p>Please consult the README for further information on how to use these data.</p> <p><em>Version 3: Fixed error common to d=7 matrices.</em></p>
Vertical land motion due to present-day ice loss from Greenland's and Canada's peripheral glaciers
<p>Greenland's bedrock responds to the ongoing loss of ice mass with an elastic vertical land motion (VLM) that is measured by Greenland's GNSS Network (GNET). The measured VLM also contains other contributions, including the long-term viscoelastic response of the Earth to previous deglaciation.</p> <p>Greenland's ice sheet (GrIS) is producing the most significant contribution to the total VLM. The contribution of peripheral glaciers (PGs) from both Greenland (GrPGs) and Arctic Canada (CanPGs) has not been carefully accounted for in the GNSS time series analysis. This is a significant concern, since GNET stations are often closer to PGs than to the ice sheet. </p> <p>We find that PGs produce significant elastic rebound, especially in North and East Greenland. Across these regions, the PGs result in up to 37% of the elastic rebound. For a few stations in the North, the VLM from PGs is larger than the GrIS one.</p>
Data files used for all code presented in the extraChIPs publication
<p>These are the data files referred to in the code during preparation of the extraChIPs primary publication. All files are expected to be extracted into a directory called 'data' in the working directory. Doing so will enable running of all code within the paper ensuring complete reproducibility of figures and results.</p><p>Data was produced using the code at https://doi.org/10.5281/zenodo.10047980 and the required files placed in the above directories.</p>
Present status, future trends, and control strategies of invasive alien plants in China affected by human activities and climate change
<p>Invasive alien plants (IAPs) have serious environmental and economic impacts, especially in vulnerable areas of China. However, IAP richness distribution patterns, their driving factors, and the dynamic shifts in potential distribution areas remain elusive. We assessed IAP richness distribution patterns and drivers using 402 IAPs recorded in China at 88,926 occurrence points, and then predicted their potential distribution areas. The results show that IAP hotspots were mainly located in southeastern China, especially coastal areas of the South and East and large inland cities. Population density, gross domestic product (GDP), and four climate variables associated with precipitation and temperature jointly influenced the richness distribution pattern of all IAPs. Specifically, population density and GDP impacted the richness distribution pattern of narrow-range IAPs, and population density, GDP, distance to the nearest national highway, and five climate variables affected the richness distribution pattern of widespread IAPs. Only GDP contributed significantly to the richness distribution pattern of the top 5% hotspot grid cells, whereas population density, GDP, and precipitation in the driest month (BIO14) significantly influenced the richness distribution patterns of hotspots for both the top 10% and top 20%. Prediction analysis demonstrated that southeastern China would have a particularly high invasion risk under both current and future climate scenarios. Regions with increases in predicted species richness are more common (44.83%–64.97%) than those with decreases, except under the Representative Concentration Pathway (RCP) 4.5 scenario. Climate change will contribute greatly to the expansion of potential IAP distribution areas under both optimistic (RCP 2.5) and pessimistic scenarios (RCP 8.5). The results of this study provide insights into the priority management of IAPs through developing promising strategies for the control and prevention of IAP invasion.</p>
Data presented in Crustal structure and anisotropy measured by CHINArray and implications for complicated deformation mechanisms beneath the eastern Tibetan margin
<p>The dataset includes the raw waveforms and receiver functions presented in the paper Crustal structure and anisotropy measured by CHINArray and implications for complicated deformation mechanisms beneath the eastern Tibetan margin, submitted to JGR Solid Earth.</p><p>Contact: Zengsijia@cug.edu.cn</p><p> </p>
Data presented in figures of "Measurement Report: Insights into the chemical composition and origin of molecular clusters and potential precursor molecules present in the free troposphere over the Southern Indian Ocean: observations from the Maïdo observatory (2150 m a.s.l., Reunion Island)"
<p>This dataset includes the data shown in the figures of "Measurement Report: Insights into the chemical composition and origin of molecular clusters present in the free troposphere over the Southern Indian Ocean: observations from the Maïdo observatory (2150 m a.s.l., Reunion Island)". Read me files containing information on the reported data can be found in the different folders. </p>
Data for White-tailed Deer Detection Intensity Increases When Coyotes Are Present
<p>Data and code used for fitting two-species occupancy model with continuous time detection process.</p>
Repeat expansions associated with human disease are present in diverse organisms
<p>These data are associated with the <a href="https://doi.org/10.57844/arcadia-e367-8b55">Repeat expansions associated with human disease are present in diverse organisms</a> pub from Arcadia Science. The code associated with production of these data is available on the GitHub repos linked in the above publication. Version 3 is the correct version of this record.</p> <p>koala_repeat_length_outliers.xlsx and full_koala_results.txt are tables containing results of repeat expansion counting from koala population sequencing data. </p> <p>full_results_20230802_foldseekandblast.csv is a table of the hits with sequence or structural similarity to human repeat expansion proteins. </p> <p>foldseek_aa_fasta.zip contains amino acid fasta files for foldseek hits of dRE proteins.</p> <p>All other tables are described in the NCBI_taxid_to_lineage_and_barchart_tree_plotting.ipynb and profile_repeats.ipynb jupyter notebooks <a title="NCBI_taxid_to_lineage_and_barchart_tree_plotting.ipynb" href="https://github.com/Arcadia-Science/2023-repeats-profiling">here</a>.</p> <p> </p>
Data and code for: Effects of past and present habitat on the gut microbiota of a wild rodent
<p><strong>Files description:</strong></p> <ul> <li>RT_workflow.qmd (quarto file that shows the R code)</li> <li>RT_workflow.html (online html file created from the quarto file)</li> <li>Input files needed for the R workflow (qza files extracted from QIIME2 and text files)</li> </ul> <p><em>For general queries, unexpected errors and/or inconsistencies, please contact tiffany.scholier@gmail.com.</em></p>
The results of thermodynamic calculations for alloys presented in a paper published in Journal of Materials Research and Technology, 2023, 27, pp. 6182–6191
<p>Thermophysical data for the alloys developed within the project. The results have been published in ournal of Materials Research and Technology, 2023, 27, pp. 6182–6191.</p>
Baseline model runs along with detailed result files presented in "pepMTL"
<p>Within Article "pepMTL: a synchronous multi-properties predictor for peptides enabled by multi-task framework and pre-trained protein language model", there exists a collection of executable files and detailed records of the operation results pertaining to the pepMTL model along with several benchmark models in the context of Retention Time (RT), Collision Cross Section (CCS), and Tandem Mass Spectrometry (MS/MS) methodologies. This compendium encompasses the source code for both the benchmark models and the pepMTL model itself—altered as necessary to accommodate the benchmark datasets—the specific datasets designed to execute these models effectively, the raw output files resulting from three parallel runs of each model, and corresponding log files meticulously documenting the execution history. Readers can garner extensive raw data concerning the direct comparisons between the pepMTL model and the array of benchmark models across the RT, CCS, and MS/MS domains as presented in the article. Furthermore, they have the ability to retrain these benchmark models on the designated datasets using the optimized code provided by the authors.<br>这是文章 "pepMTL: a synchronous multi-properties predictor for peptides enabled by multi-task framework and pre-trained protein language model"中,pepMTL模型以及RT、CCS、MS/MS方面各个基准模型的运行文件以及详细运行结果的记录文件。该文件中包含了各个基准模型以及pepMTL模型运行的代码(有必要的话会经过作者的修改以适应基准数据集)、适应模型运行的基准数据集、模型平行运行三次后产生的原始结果文件以及运行日志记录文件。读者可以从这些数据中获取文章中关于pepMTL在RT、CCS、MS/MS方面与各个基准模型进行对比的详细原始信息,并可以通过运行作者优化后的代码将这些基准模型在基准数据集上进行模型训练。<br><br></p> <p> </p>
Data and code for : 'Interactive effects of temperature, aridity, and plant stoichiometry on insect herbivory: past and present', The American Naturalist
<p>The files are for the manuscript 'Interactive effects of temperature, aridity, and plant stoichiometry on insect herbivory: past and present' consist of the following major parts:</p> <p> </p> <p>1. <strong>FILE “all site summary.xlsx”</strong>: Summary data of all the fossil sites used in the study. This is an MS Excel file and has three sheets, namely:</p> <p>a. <strong>All_sites</strong>: This sheet lists various metadata related to each of the 39 fossil sites used in this study. The name of the site is listed as ‘Flora’, and each site has the following data associated with it: Epoch, Latitude Bin, Region, Geographic location, Lat(itude), Long(itude), Depositional.Environment, Age, Age.error, MAT.C (Mean Annual Temperature in degrees C), MAT.Error, MAP.mm.yr (Mean Annual Precipitation in mm), MAP.error, and No.Leaves (number of leaf specimens).</p> <p>b. <strong>PEB sites list (Bighorn)</strong>: This sheet specifically lists the 8 Paleocene-Eocene boundary (PEB) sites from the Bighorn basin along with relevant metadata. These sites are also present in the All_sites tab.</p> <p>c. <strong>PEB sites list (Hanna)</strong>: This sheet lists the 2 Hanna Basin sites from the PEB with relevant metadata.</p> <p><strong>2. </strong><strong>FOLDER “fossil site herbivory data”: </strong>This folder contains the leaf-level herbivory data from all the fossil sites used in this study (including the PEB sites from Hanna Basin) in .csv format. Each file has the following data structure: the first column lists the morphotaxa name of the leaf and the subsequent columns represent whether a particular DT (Damage Type, represented by individual column names) is present (1) or absent (0/NA) in that leaf.</p> <p><strong>3. </strong><strong>FOLDER “modern site herbivory data”: </strong>This folder contains the leaf-level level herbivory data from all the modern sites used in this study in .txt format. “presab_data_HFmatrix” is the data from the three sites in Harvard Forest, “presab_data_LSmatrix” from three sites in La Selva and “presab_data_SERCmatrix” from the three sites in the Smithsonian Environmental Research Center. The quarry number is the name of the site in each file. The rest of the structure is same as fossil data: the second column lists the taxa name for the leaf and the subsequent columns represent whether a particular DT (Damage Type, represented by individual column names) is present (1) or absent (0/NA) in that leaf.</p> <p><strong>4. </strong><strong>FOLDER “masks for FFGs”: </strong>This folder has two files, namely:</p> <p><strong>a. </strong><strong>“ffgdef_DT.csv”: </strong>This file lists which Functional Feeding Group does each DT belong to. Oviposition =0, Skeletonization=1, Surface feeding =2, Galling=3, Hole Feeding=4, Mining =5, Margin Feeding =6, Piercing and Sucking=7.</p> <p><strong>b. </strong><strong>“mask_DT.csv”: </strong>This file lists whether a given DT is a herbivory damage, a specialized damage, gall or mining damage (T/F).</p> <p><strong>5. </strong><strong>FOLDER “N2_fixing_site_level_taxa”: </strong>This folder contains 8 files in .csv format corresponding to each of the 8 PEB Bighorn Basin sites. Each file has the same structure: the first column corresponds to a specific morphotaxa and the next column indicates whether it is a N2 fixing plant (1) or not (0).</p> <p><strong>6. FILE "Analyais_base.Rmd" </strong>gives base code to replicate all the results.</p>
Presentation in ADANO 2022: Vibration measurements: Laser Doppler vibrometry (LDV)
<p><span>These data include Jae Hoon Sim's presentation in Conventus Herbsttagung in der Leopoldina mit wissenschaftlicher Unterstützung der ADANO, and related documents</span></p>
Presentation in 45th ARO: Multiphoton imaging for 3-D morphometry and characterization of fiber structure of the full human tympanic membrane
<p>This is a poster presentation in t<span>he 45th Association for Research in Otolaryngology Mid-Winter Meeting 2022, and the image files used for the poster.</span></p>
Presentation in HEARING: High-resolution structural and functional EAR imaging 2023: Three-dimensional vibration of the human tympanic membrane using a scanning laser doppler vibrometer
<p>This is for Bastian Baselt's poster presentation in HEARING: High-resolution structural and functional EAR imaging, Ascona, Switzerland in 2023, and the related data.</p>
Presentation in 46th ARO: Mesoscale Selective Plane-Illumination Microscopy for Thickness Map of Sub-Layers of the Human Tympanic Membrane
<p>This upload is for the poster presentation of Merlin Schär at the 46th Annual Midwinter Conference of the Association for Research in Otolaryngology on the development and application of mesoscale selective plane-illumination microscopy for imaging of the sublayers of the human tympanic membrane. The upload contains the poster, the related imaging data with corresponding metadata for scanning and image processing, as well as supplementary figures illustrating the stitching of subvolume scans and the merged 3D rendering.</p>
Present and past presence of Santolina ligustica
<p>The data frame reports the presence of Santolina ligustica. Distribution is reported as presence in a grid at 0.0003825773 x 0.000266708 degrees centigrade of resolution (extent: 9.480258, 9.637115, 44.15192, 44.26713; crs: +proj=longlat +datum=WGS84 +no_defs). The column "x" and "y" reported the centroids of the cells where specie occur. The column "Distribution_1999" shows the presence of the species as reported in Torricelli et al. 1999. In the file "Distribution_2021.tif" is reported the presence of the species detected by the authors during field surveys carried out in 2020 and 2021.</p>
Source Data File – Dual role of the peptide loading complex as proofreader and limiter of MHC-I presentation – PNAS 2023-21600
<p>Source Data Files</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.