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641
datasets available to search
ShareScore release 0.9.0
Dataset results
641 results for “data validation”
Using RNA Seq to validate transcriptional profile data obtained by Nanostring analysis
GEO Series GSE83773. Pseudomonas aeruginosa. 4 samples. Type: Expression profiling by high throughput sequencing.
Expression data from The human glioblastoma cell culture resource: validated cell models representing all molecular subtypes (exon)
GEO Series GSE72217. Homo sapiens. 47 samples. Type: Expression profiling by array.
Expression data for validation of single cell cDNA amplification method (V1V3 method)
GEO Series GSE4308. Mus musculus. 16 samples. Type: Expression profiling by array.
Validation data for Lawrence Livermore Microbial Detection Arrays
GEO Series GSE24700. Chlorocebus aethiops; Homo sapiens; Vaccinia virus Lister; Human betaherpesvirus 6B; Human respiratory syncytial virus B1; Bovine viral diarrhea virus 1; Human adenovirus 7; Human respiratory syncytial virus A strain Long; synthetic construct; Bluetongue virus 2. 26 samples. Type: Other.
Validation data for Lawrence Livermore Microbial Detection Array version 1
GEO Series GSE24699. Bovine viral diarrhea virus 1; Homo sapiens; Vaccinia virus Lister; Human adenovirus 7; Human respiratory syncytial virus B1; Human respiratory syncytial virus A strain Long; Human betaherpesvirus 6B; synthetic construct; Bluetongue virus 2. 7 samples. Type: Other.
Inference and validation of predictive gene networks from biomedical literature and gene expression data
GEO Series GSE53091. Homo sapiens. 125 samples. Type: Expression profiling by array.
FIGURE 21 in Description of Pallisentis thapari n. sp. and a re-description of Acanthosentis seenghalae (Acanthocephala, Quadrigyridae, Pallisentinae) using morphological and molecular data, with analysis on the validity of the sub-genera of Pallisentis
FIGURE 21. Single phylogenetic tree produced by the parsimony analysis of 18s rDNA sequences including the sequence of Pallisentis thapari n. sp., Acanthosentis seenghalae Chowhan, Gupta, Khera, 1988, and the sequences of the taxa downloaded from GenBank: names of species associated with sequences in the present work are included (see Table 1 for the taxon names given in GenBank). Putative sub-genera (sensu Amin et al. 2000) indicated in color.
FIGURES 1–8 in Description of Pallisentis thapari n. sp. and a re-description of Acanthosentis seenghalae (Acanthocephala, Quadrigyridae, Pallisentinae) using morphological and molecular data, with analysis on the validity of the sub-genera of Pallisentis
FIGURES 1–8. Drawing of specimens of Pallisentis thapari n. sp.: 1. Male worm; 2. Posterior part of male; 3. Proboscis; 4. Hooks of the proboscis; 5. Trunk spines with optically dense Y-shaped core; 6. Female worm containing ovarian balls; 7. Posterior end and gonopore with ovarian balls shown in uterine bell; 8. Eggs. Scale bars: 1, 2 and 6 = 1.0 mm; 3, 4, 5 and 7 = 100 µm; 8 = 10 µm.
FIGURES 15–20 in Description of Pallisentis thapari n. sp. and a re-description of Acanthosentis seenghalae (Acanthocephala, Quadrigyridae, Pallisentinae) using morphological and molecular data, with analysis on the validity of the sub-genera of Pallisentis
FIGURES 15–20. Scanning electron micrographs: 15. Proboscis of Pallisentis thapari n. sp. showing hooks that decrease in size from anterior to posterior rings; 16. Trunk spines of P. thapari n. sp. with optically dense Y-shaped core and conical exterior; 17. Hooked point of a collar spine of P. thapari n. sp; 18. Bursa of a male worm of P. thapari n. sp.; 19. Trunk spines of a specimen of Acanthosentis seenghalae; 20. Proboscis of a male worm of A. seenghalae. Scale bars: 15 = 50 µm; 16, 18 and 19 = 100 µm; 17 = 10 µm; 20 = 20 µm.
Data from: Development and validation of a core genome multilocus sequence typing (cgMLST) scheme for Klebsiella oxytoca
<p>The dataset hereby shared contains the genomes used to create and validate a newly proposed schema for <i>Klebsiella oxytoca.</i> </p><p>As reference dataset, all publicly available <i>K. oxytoca</i> draft and complete genomes (199) were downloaded from RefSeq in NCBI database in September 2021. All assemblies were filtered by quality and identification methods in order to remove highly fragmented genomes (more than 200 contigs) and genomes that did not correspond to <i>K. oxytoca sensu stricto</i>. A series of assemblies, including complete and draft genomes, were removed because they (i) did not correspond to <i>K. oxytoca</i> species based on MLST or rMLST, and because they (ii) produced ANI values lower than 96% against <i>K. oxytoca</i>. Apart from some genomes that had no correspondence to<i> K. oxytoca,</i> several others were discarded because they did not correspond to <i>K. oxytoca </i>species sensu stricto, but other closely related species included in the <i>K. oxytoca </i>species complex, such as <i>K. michiganensis</i> or <i>K. grimontii.</i> Additional identification of blaOXY gene variants supported this observation. Finally, genomes that had not been assigned an assigned ST were also removed, since they would not contribute to the schema validation. Therefore, the final dataset consisted in 16 high-quality complete genomes of <i>K. oxytoca sensu stricto. </i></p><p> </p>
Further Psychometric Data for the Reliability and the Diagnostic Validity of CRS-R
ClinicalTrials.gov study NCT03126929. IPD Sharing: YES. Countries: 0. Publications: 0.
Definition and Validation of Normative Data of EndoFLIP™ Measurements in Healthy Subjects
ClinicalTrials.gov study NCT03831724. IPD Sharing: NO. Countries: 0. Publications: 0.
Expression data from validation cohort of children with septic shock
GEO Series GSE26378. Homo sapiens. 103 samples. Type: Expression profiling by array.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse tibialis anterior muscle transcriptomic proteomic and epigenomic data
NASA s Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS) it is imperative to use crew time efficiently while maximizing high-quality science return. NASA s GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics systems biology-based approach and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA DNA and protein extracted from archived RR-1 tissue samples for epigenomic transcriptomic and proteomic assays. During the first RR spaceflight experiment a variety of tissue types were harvested from subjects snap-frozen or RNAlater-preserved and then stored at least a year at -80C after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands quadriceps gastrocnemius tibialis anterior extensor digitorum longus soleus eye and kidney. We report here protocols for and results of these tissue extractions and thus the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse gastrocnemius muscle transcriptomic proteomic and epigenomic data
NASA s Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS) it is imperative to use crew time efficiently while maximizing high-quality science return. NASA s GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics systems biology-based approach and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA DNA and protein extracted from archived RR-1 tissue samples for epigenomic transcriptomic and proteomic assays. During the first RR spaceflight experiment a variety of tissue types were harvested from subjects snap-frozen or RNAlater-preserved and then stored at least a year at -80C after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands quadriceps gastrocnemius tibialis anterior extensor digitorum longus soleus eye and kidney. We report here protocols for and results of these tissue extractions and thus the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities.
GPM Ground Validation Navigation Data DC-8 OLYMPEX V1
The GPM Ground Validation NASA DC-8 Navigation Data OLYMPEX dataset supplies navigation data collected by the NASA DC-8 aircraft for flights that occurred during November 5, 2015 through December 19, 2015 for the Olympic Mountains Experiment (OLYMPEX) GPM Ground Validation field campaign. This navigation dataset consists of multiple altitude, pressure, temperature, airspeed, and ground speed measurements in ASCII-IWG1 and XML data formats.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse adrenal gland transcriptomic, proteomic, and epigenomic data
NASA's Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS), it is imperative to use crew time efficiently while maximizing high-quality science return. NASA's GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics, systems biology-based approach, and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA, DNA, and protein extracted from archived RR-1 tissue samples for epigenomic, transcriptomic, and proteomic assays. During the first RR spaceflight experiment, a variety of tissue types were harvested from subjects, snap-frozen or RNAlater-preserved, and then stored at least a year at -80C after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands, quadriceps, gastrocnemius, tibialis anterior, extensor digitorum longus, soleus, eye, and kidney. We report here protocols for and results of these tissue extractions, and thus, the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues, our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse liver transcriptomic proteomic and epigenomic data
RR-1 is a validation flight to evaluate the hardware operational and science capabilities of the Rodent Research Project on the ISS. RNA DNA and protein were purified from liver tissues from RR-1 mice (female C57BL/6J 16wk old at time of launch). From each group two liver samples were collected and frozen immediately after euthanasia. The rest of the liver samples from each group were collected from frozen carcasses dissected post-flight. RNA-Seq whole genome and RNA BS-Seq (bisulfite sequencing) and proteomic expression profiling were performed. xc2 xa0RNA extracted from these tissues was re-sequenced; these data are available as part of GLDS-168 (https://genelab-data.ndc.nasa.gov/genelab/accession/GLDS-168). xc2 xa0
GPM Ground Validation NASA ER-2 Navigation Data OLYMPEX V1
The GPM Ground Validation NASA ER-2 Navigation Data OLYMPEX dataset supplies navigation data collected by the NASA ER-2 aircraft for flights that occurred during November 9, 2015 through December 15, 2015 for one of the GPM Ground Validation field campaigns called the Olympic Mountains Experiment (OLYMPEX). This navigation dataset consists of multiple altitude, pressure, temperature parameters, airspeed, and ground speed measurements in ASCII, ASCII-IWG1, and XML data file formats.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse left gastrocnemius muscle transcriptomic, proteomic, and epigenomic data
NASA's Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS), it is imperative to use crew time efficiently while maximizing high-quality science return. NASA's GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics, systems biology-based approach, and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA, DNA, and protein extracted from archived RR-1 tissue samples for epigenomic, transcriptomic, and proteomic assays. During the first RR spaceflight experiment (RR-1), a variety of tissue types were harvested from subjects, snap-frozen or RNAlater-preserved, and then stored at least a year at -80C after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands, quadriceps, gastrocnemius, tibialis anterior, extensor digitorum longus, soleus, eye, and kidney. We report here protocols for and results of these tissue extractions, and thus, the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues, our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.