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2,216 results for “membrane”
MD simulations of FVa membrane binding 1/4
<p>For details see the publication:<br> "Understanding the complex membrane binding of a protein with multiple anchoring domains"<br> By J. J. Madsen & Y. Z. Ohkubo</p>
MD simulations of FVa membrane binding 2/4
<p>For details see the publication:<br> "Understanding the complex membrane binding of a protein with multiple anchoring domains"<br> By J. J. Madsen & Y. Z. Ohkubo</p>
Cellulose synthase-like D movement in the plasma membrane requires enzymatic activity
<p>Cellulose Synthase-Like D (CSLD) proteins, important for tip growth and cell division, are known to generate β-1,4-glucan. However, whether they are propelled in the membrane as the glucan chains they produce assemble into microfibrils is unknown. To address this, we endogenously tagged all eight CSLDs in <em>Physcomitrium patens</em> and discovered that they all localize to the apex of tip-growing cells and to the cell plate during cytokinesis. Actin is required to target CSLD to cell tips concomitant with cell expansion, but not to cell plates, which depend on actin and CSLD for structural support. Like Cellulose Synthase (CESA), CSLD requires catalytic activity to move in the plasma membrane. We discovered that CSLD moves significantly faster, with shorter duration and less linear trajectories than CESA. In contrast to CESA, CSLD movement was insensitive to the cellulose synthesis inhibitor isoxaben, suggesting that CSLD and CESA function within different complexes possibly producing structurally distinct cellulose microfibrils.</p>
Source data belonged to "Establishing structure-property linkages for wicking time predictions in porous polymeric membranes using a data-driven approach"
<p>This record contains all the necessary data to obtain the results of the study "Establishing structure-property linkages for wicking time predictions in porous polymeric membranes using a data-driven approach"</p>
Optimal transport and model (Membrane-cortex-tension)
<p>Optimal Transport and model (Membrane Cortex Tension)</p>
Adsorbed polymer conjugates to adaptively inhibit blood coagulation activation by medical membranes
<p>Dataset to the manuscript</p> <p><strong>'Adsorbed polymer conjugates to adaptively inhibit blood coagulation activation by medical membranes'</strong></p> <p>Tina Helmecke, Dominik Hahn, André Ruland, Mikhail V. Tsurkan, Manfred F. Maitz, Carsten Werner</p>
Pure POPC membrane simulations with 790 mM CaCl2 with the CHARMM-Drude2023 force field (OpenMM)
<p>214.85 ns MD simulation of pure POPC membrane using Charmm-Drude2023 polarizable force field (</p> <p><strong>Drude Polarizable Lipid Force Field with Explicit Treatment of LongRange Dispersion:<br> Parametrization and Validation for Saturated and Monounsaturated Zwitterionic Lipids</strong></p> <p><strong>)</strong></p> <p>.The system contains 128 POPC lipids, 91 CaCl2, and 6400 SWM4 water molecules.</p> <p>Before running the Drude simulation, the system has been equilibriated using Charmm36 force field for 200 ns. The last frame of that simulation was used to generate Drude polarizable model. Frame saving frequency is 10ps. There are 21485 frames in this trajectory.</p>
Pure POPC membrane simulations with 350 mM NaCl with the CHARMM-Drude2023 force field (OpenMM)
<p>223.97 ns MD simulation of pure POPC membrane using Charmm-Drude2023 polarizable force field (</p> <p><strong>Drude Polarizable Lipid Force Field with Explicit Treatment of LongRange Dispersion:<br> Parametrization and Validation for Saturated and Monounsaturated Zwitterionic Lipids</strong></p> <p><strong>)</strong></p> <p>.The system contains 128 POPC lipids, 41 NaCl, and 6400 SWM4 water molecules.</p> <p>Before running the Drude simulation, the system has been equilibriated using Charmm36 force field for 200 ns. The last frame of that simulation was used to generate Drude polarizable model. Frame saving frequency is 10ps. There are 22397 frames in this trajectory.</p>
Repository for 'Surface-induced phase separation of reconstituted nascent integrin clusters on lipid membranes'
<p>Surface-induced phase separation of reconstituted nascent integrin clusters on lipid membranes (PNAS)</p> <p>The structure of this repository is as follows:</p> <p>1. FRAP_curves.zip -- contains FRAP curves </p> <ul> <li>FRAP_curves_for_fig2F_figS5</li> <li>FRAP_curves_for_fig2G</li> <li>FRAP_curves_for_fig2H</li> <li>FRAP_curves_for_fig2I</li> <li>FRAP_curves_for_fig2J</li> <li>FRAP_curves_for_fig2K</li> <li>FRAP_curves_for_figS8&E</li> </ul> <p>2. Images.zip -- contains confocal images epifluorescence images</p> <ul> <li>Images_for_fig1G_fig1H</li> <li>Images_for_fig3D</li> <li>Images_for_figS1</li> <li>Images_for_figS2C</li> <li>Images_for_figS3C</li> <li>Images_for_figS6</li> </ul> <p>3. Source_data.xlsx -- contains the data for plotting the Figures</p>
The insertase YidC chaperones the polytopic membrane protein MelB inserting and folding simultaneously from both termini
<p>The deposited data set contains data for the main figure 3 of the manuscript "The insertase YidC chaperones the polytopic membrane protein MelB inserting and folding simultaneously from both termini" by Blaimschein et al. published in Structure (2023).</p>
The insertase YidC chaperones the polytopic membrane protein MelB inserting and folding simultaneously from both termini
<p>The deposited data set contains data for the main figure 2 of the manuscript "The insertase YidC chaperones the polytopic membrane protein MelB inserting and folding simultaneously from both termini" by Blaimschein et al. published in Structure (2023).</p>
The insertase YidC chaperones the polytopic membrane protein MelB inserting and folding simultaneously from both termini
<p>The deposited data set contains data for the main figure 6 of the manuscript "The insertase YidC chaperones the polytopic membrane protein MelB inserting and folding simultaneously from both termini" by Blaimschein et al. published in Structure (2023).</p>
Fig. 4 in Transcriptome-wide study in the green microalga Messastrum gracile SE-MC4 identifies prominent roles of photosynthetic integral membrane protein genes during exponential growth stage
Fig. 4. DEG functional enrichment during different growth stages. Pathway functional enrichment of differential expressed genes (DEGs) by using Kyoto Encyclopedia of Genes and Genomes (KEGG) database. Pathways are at the yaxis plot, while rich factor values are at the x-axis. Size of the dots reflect gene number; small dot means 500 genes, big dot means 1000 genes. Darker the color of the dot means the highest the significant value of enrichment (Q-value). (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 6 in Transcriptome-wide study in the green microalga Messastrum gracile SE-MC4 identifies prominent roles of photosynthetic integral membrane protein genes during exponential growth stage
Fig. 6. Summary differential expressed genes (DEGs) in photosynthesis – antenna proteins pathway (second most enriched pathway) using Kyoto Encyclopedia of Genes and Genomes (KEGG) functional annotation analysis. The genes at early stationary growth phase were normalized against genes at early exponential growth phase. Green color means down-regulated DEGs; red color means up-regulated DEGs; black color means no DEGs. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 1 in Transcriptome-wide study in the green microalga Messastrum gracile SE-MC4 identifies prominent roles of photosynthetic integral membrane protein genes during exponential growth stage
Fig. 1. Functional annotation of unigenes. Ratio of different species maps on transcripts annotation analysis based on non-redundant (NR) protein databases. Blue color means Monoraphidium neglectum; green color means other species; orange means Porphyra umbilicalis; grey color means Aureococcus anophagefferens; yellow color means Guillardia theta CCMP2712; purple color means Chlamydomonas reinhardtii. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 5 in Transcriptome-wide study in the green microalga Messastrum gracile SE-MC4 identifies prominent roles of photosynthetic integral membrane protein genes during exponential growth stage
Fig. 5. Top DEG pathway enrichment involved during different growth stages. Summary of differential expressed genes (DEGs) identified in photosynthesis pathway (most enriched pathway) of M. gracile SE-MC4 according to Kyoto Encyclopedia of Genes and Genomes (KEGG) functional annotation analysis. The genes at early stationary growth phase were normalized against genes at early exponential growth phase. Green color means down-regulated DEGs; red color means up-regulated DEGs; black color means no DEGs. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 3 in Transcriptome-wide study in the green microalga Messastrum gracile SE-MC4 identifies prominent roles of photosynthetic integral membrane protein genes during exponential growth stage
Fig. 3. Differential expressed gene analysis (DEG) of transcriptome. DEG in Volcano plot (log transform of early exponential growth and early stationary growth phases versus inverse log Padj – corrected P-value). Up-regulated DEGs are in red color dots, down-regulated DEGs are in blue dots, while grey dots represent no significant DEGs. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 2 in Transcriptome-wide study in the green microalga Messastrum gracile SE-MC4 identifies prominent roles of photosynthetic integral membrane protein genes during exponential growth stage
Fig. 2. Transcriptome expression analysis during different growth stages. (a) Venn diagram for specific treatment genes. Venn diagram constructed based on subset between gene pools in the early exponential and early stationary growth phases of M. gracile SEMC4 cultures. The total number of early exponential growth-specific (EEG-specific) genes (blue subset); early stationary growth-specific (ESG-specific) genes (pink sub set) and regulatory genes (purple sub set) are as indicated. (b) Soft clustering based on time series analysis on expression changes between early exponential growth and early stationary growth phases of M. gracile SE-MC4 cultures. R1, R2 and R3 are the biological replicates of each early exponential (day 1) and early stationary (day 12) growth phase of M. gracile SE-MC4 cultures. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Data contained in figures of the manuscript "Nitrogen-vacancy magnetometry of CrSBr by diamond membrane transfer"
<p>The data contained in Figure 3 and Figure 4 of the manuscript "Nitrogen-vacancy magnetometry of CrSBr by diamond membrane transfer" are provided in this repository. </p> <p>See https://arxiv.org/abs/2307.01129 for the manuscript on arXiv.org. </p>
Membranes for oxygen separation
<p>Performance test of membrane for oxygen separation</p>
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.