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578
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ShareScore release 0.9.0
Dataset results
578 results for “telomeres”
Quantitative Analysis of Telomeric Nucleosomal Compaction following ATRX Depletion
GEO Series GSE130640. Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Pt-ttpy, a G-quadruplex binding platinum complex, induces telomere dysfunction and G-rich regions DNA damage
GEO Series GSE171450. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Mouse HP1γ regulates TRF1 expression and telomere stability
GEO Series GSE240434. Mus musculus. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Telomere-specific chromatin capture using a pyrrole–imidazole polyamide probe for the identification of proteins and non-coding [PI-PRICh, DNA_pulldown1]
GEO Series GSE181608. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Telomeres reforged with non-telomeric sequences in mouse embryonic stem cells (WGS)
GEO Series GSE147914. Mus musculus. 4 samples. Type: Other.
GCN5a is a telomeric lysine acetyltransferase whose loss primes Toxoplasma gondii for latency (CUT&Tag)
GEO Series GSE286088. Toxoplasma gondii. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Telomere dysfunction
GEO Series GSE4627. Mus musculus. 8 samples. Type: Expression profiling by array.
DNA-RNA three-stranded hybrids: from the telomere to the genome
GEO Series GSE143919. Mus musculus; Homo sapiens. 16 samples. Type: Other.
Endogenous genes regulated by telomere length
GEO Series GSE6799. Homo sapiens. 11 samples. Type: Expression profiling by array.
m6A RNA modification of TERRA lncRNA drives R-Loop formation and is required for telomere maintenance in ALT tumors [III]
GEO Series GSE240690. Homo sapiens. 2 samples. Type: Other.
Telomere-to-Telomere assembly and annotation of Pinot Noir 40024
<p> PN40024, a highly homozygous Pinot Noir inbred line, was used for T2T genome assembly. In total, we generated 39.12Gb (~65X coverage) HiFi reads by the PacBio platform. The preliminary assembly were conducted using Hifiasm on HiFi reads, and Mumer was used to order and orient the contig-level assemblies using the PN40024.v3 genome as the reference, forming 169 contigs representing 19 chromosomes.</p> <p> The PN40024.T2T genome size (494.87M) is longer than that of PN40024.v3 (426.18M). Due to the accuracy of HiFi long reads, the N50 length PN40024.T2T of (26.89 Mb) is 260 times higher than PN40024.v3 (~102Kb). For all 9423 gaps in PN40024.v3 assembly, PN40024.T2T assembly is the gap-free grape genome.To validate the quality of our assembly, K-mer and BUSCO were conducted. We used K-mer to evaluate genomic heterozygosity, estimated 99.8%. BUSCO to evaluate genomic completeness, about 98.5% of the core conserved plant genes were found complete in the genome assembly.</p> <p> </p> <p><strong>The PN40024.T2T genome assembly:</strong> PN40024.T2T.fa</p> <p><strong>The PN40024.T2T gene annotation: </strong>PN40024.gff</p> <p><strong>The PN40024.T2T TE annotation: </strong>PN40024.TE.gff</p> <p><strong>The PN40024.T2T centromere annotation: </strong>PN40024.trf.gff3</p> <p><strong>Comparison of gene annotation between PN40024.T2T, PN40024.v3,PN40024.v4 and PN40024.v4.1:</strong>gene_correlation.tsv</p>
Arsenic-induced transcriptional interference generates arm-wide γH2A, with distinct telomeric and centromeric responses
GEO Series GSE318138. Saccharomyces cerevisiae. 114 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
DNA-RNA three-stranded hybrids: from the telomere to the genome (human dataset)
GEO Series GSE143918. Homo sapiens. 4 samples. Type: Other.
Telomere Shortening Impairs PGC Fate Decision [ATAC-seq]
GEO Series GSE157301. Mus musculus. 11 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Telomeres reforged with non-telomeric sequences in mouse embryonic stem cells (Iso-seq)
GEO Series GSE147915. Mus musculus. 2 samples. Type: Other.
Telomere length and salivary cortisol stress reactivity in very preterm infants
<p>Raw data of the study "Telomere length and salivary cortisol stress reactivity in very preterm infants" In this study, we prospectively examined the relationship between NICU pain-related stress and HPA axis reactivity to an age-appropriate socio-emotional condition (i.e., the Still-Face Procedure, SFP) in healthy VPT infants at 3-month corrected age. NICU pain-related stress was computed as the ratio between the number of skin-breaking procedures and length of NICU stay. A differential score (i.e., ∆TL) was obtained subtracting TL at birth from TL at discharge. A normalized (log10) cortisol reactivity index (CRI) was obtained by averaging post-stress (20 min after SFP) salivary cortisol sample on baseline value. A regression model controlling for neonatal and socio-demographic confounders showed that ∆TL was the only significant predictor of CRI. Although preliminary, these findings contribute to our knowledge of the mechanisms linking early exposures to adversity and later in life regulation of the HPA axis in VPT infants.</p>
The non-telomeric evolutionary trajectory of TRF2 in zebrafish reveals its specific roles in neurodevelopment and aging
<p>The figures of publication: <strong>The non-telomeric evolutionary trajectory of TRF2 in zebrafish</strong></p> <p><strong>reveals its specific roles in neurodevelopment and aging</strong></p>
Bathymetric limits shape covariation between metabolic plasticity, oxidative stress and telomere dynamics in an intertidal ectotherm
<p>We provide the 4 datasets and the code used to analyse results of the bathymetric gradient on proteomic profile (dataset 1), ATP content and mitochondrial density (dataset 2), telomere length (dataset 3) and physiological rates (dataset 4). </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.