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695
datasets available to search
ShareScore release 0.7.1
Dataset results
695 results for “topologies”
Regions of very low H3K27me3 partition the Drosophila genome into topological domains
GEO Series GSE85504. Drosophila melanogaster. 4 samples. Type: Genome binding/occupancy profiling by genome tiling array; Other.
Allelic topological centering by transcription factors drives oncogenic multi-enhancer transcriptional regulation [ATAC-seq]
GEO Series GSE293330. Homo sapiens. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Modular regulation of Myc transcription by a topologically defined enhancer cluster dedicated to pluripotency and early embryonic expression [4C-seq]
GEO Series GSE222294. Mus musculus. 8 samples. Type: Other.
Interplay between genome topology and gene regulation during somatic cell reprogramming [ChIP-seq]
GEO Series GSE96548. Mus musculus. 11 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [I]
GEO Series GSE135394. Mus musculus; Homo sapiens. 113 samples. Type: Expression profiling by high throughput sequencing.
Factors from human embryonic stem cell-derived fibroblast-like cells promote topology-dependent hepatic differentiation in primate embryonic stem cells and human induced pluripotent stem cells
GEO Series GSE19964. Macaca mulatta. 10 samples. Type: Expression profiling by array.
PRC2 facilitates the regulatory topology required for poised enhancer function during pluripotent stem cell differentiation [ChIP-seq]
GEO Series GSE89209. Mus musculus. 23 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
An enhancer cluster controls gene activity and topology of the SCN5A-SCN10A locus in vivo (RNA-Seq)
GEO Series GSE123440. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Altered chromatin topologies caused by balanced chromosomal translocation lead to central iris hypoplasia [Cut & Tag]
GEO Series GSE266513. Homo sapiens. 4 samples. Type: Other.
Large-scale genomic reorganizations of topological domains (TADs) at the HoxD locus (4C-Seq)
GEO Series GSE98861. Mus musculus. 12 samples. Type: Other.
Pairing competitive and topologically distinct regulatory modules enhances patterned gene expression
GEO Series GSE9665. Caenorhabditis elegans. 74 samples. Type: Expression profiling by array.
Genome-wide transcriptional, epigenetic, and topological changes occurring in human natural killer cells in response to HDAC inhibitor [HiChIP]
GEO Series GSE227663. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Two unrelated distal genes activated by a shared enhancer benefit from localizing inside the same small topological domain (HiC).
GEO Series GSE274835. Homo sapiens. 5 samples. Type: Other.
Separable functions of Tof1/Timeless in intra-S-checkpoint signalling, replisome stability and DNA topological stress
GEO Series GSE144321. Saccharomyces cerevisiae. 54 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics
GEO Series GSE265819. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
An enhancer cluster controls gene activity and topology of the SCN5A-SCN10A locus in vivo (Hi-C)
GEO Series GSE129062. Mus musculus. 18 samples. Type: Other.
A single early-in-life antibiotic course has long-lasting effect on microbial network topology and host immunity, in a murine model
GEO Series GSE98292. Mus musculus. 36 samples. Type: Expression profiling by array.
Interplay between genome topology and gene regulation during somatic cell reprogramming [4C-seq]
GEO Series GSE96546. Mus musculus. 8 samples. Type: Other.
The oncogenic BRD4-NUT chromatin regulator drives aberrant transcription within large topological domains
GEO Series GSE70868. Homo sapiens. 75 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Transcriptomic and topological analyses of human lung tumors identify cancer-associated fibroblast subsets associated with T cell exclusion
GEO Series GSE183219. Homo sapiens. 27 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.