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Figure 7 in New material of Parabrachyodus hyopotamoides from Samane Nala, Bugti Hills (Pakistan) and the origin of Merycopotamini (Mammalia: Hippopotamoidea)
Figure 7. Hemi-mandible fragments of Parabrachyodus hyopotamoides from A, Tobah (Bugti Hills), right alveoli of P/3, and P/4-M/3 (UM-TOB-001) in occlusal view, and B, C, Safed Nala (Zinda Pir Dome), right M/3 (UM-SFN-001) in occlusal (B) and labial (C) views. Scale bars equal 10 mm.
Figure 5 in New material of Parabrachyodus hyopotamoides from Samane Nala, Bugti Hills (Pakistan) and the origin of Merycopotamini (Mammalia: Hippopotamoidea)
Figure 5. Upper teeth of Parabrachyodus hyopotamoides. A, left upper incisor (I2/ or I3/) in lingual (left) and labial (right) view (UM-SAM4-024). B, P1/-P4/ from a left maxilla (M12034) in occlusal view. C, right P1/ (UM-SAM4-025) in occlusal view (mirror). D, left P3/ (M10598) in occlusal view. E, left maxilla with P4/-M1/ in occlusal view, with a drawing of P4/. F, left dP3/ (M12820) in occlusal view. Abbreviations derived from the nomenclature introduced in Figure 2: protoc., protocrista. G, dental variation of Parabrachyodus hyopotamoides figured on composite upper molars (N = 26 for M3/; N = 11 for M2/). Variable characters are coloured. Character frequency: black: 100%; red: (75–99%); yellow: (50–74%); green: (25–49%); blue: (0–24%). The presence/absence of the coloured character is evaluated. 1, mesostyle divided into two slender apices; 2, parastyle of the same size or smaller than mesostyle; 3, wing-like labial cingulum; 4, postectoprotocrista reaching the lingual edge of the tooth; 5, double curvature of the postmetacristule. The arrow indicates the mesiolingual direction. Teeth are not to scale. H, left maxilla with M1/-M3/ (M12718) in occlusal view. I, right maxilla with P4/-M3/ (M12824) in occlusal view (mirror). Comparisons with drawings of (J) left M3/ of Brachyodus onoideus in occlusal view, modified from Ducrocq & Lihoreau (2006); K, left M3/ of Telmatodon orientalis (M12040, holotype) in occlusal view; L, right M3/ of Gonotelma shahbazi (UM-SAM4-010) in occlusal view (mirror); M, left M3/ of SiƲameryx palaeindicus (UM-SAM4-005) in occlusal view. N, M3/ of Par. hyopotamoides (UM-SAM5-001) in distal view, showing the low value of the angle between the lingual slope of the metaconule and the socket. Scale bars all equal 10 mm.
Figure 3 in New material of Parabrachyodus hyopotamoides from Samane Nala, Bugti Hills (Pakistan) and the origin of Merycopotamini (Mammalia: Hippopotamoidea)
Figure 3. Dental nomenclature based on composite drawings (not to scale) of upper and lower jugal teeth of Parabrachyodus hyopotamoides in occlusal view, following Boisserie et al. (2010). Cusp/cuspid names are in bold; those of style/stylids and cingula/cingulids in italics; and those of crista/cristids and fossa/fossids in full text. Abbreviations: -c./-cul./-cid./-culid., crista/ cristule/cristid/cristulid; acc.cusp, accessory cuspids; -f./-ful./-fid., fossa/fossule/fossid; tran.fossa/foss., transverse fossa/ fossid; -st./-std., style/stylid; tran.val., transverse valley. The arrows indicate the mesiolingual direction. The methods of measurements for Lll1/2, following Lihoreau et al. (2004a), and Lll3 are in red. P3/ is modified from Holroyd et al. (2010).
Figure 2. A in New material of Parabrachyodus hyopotamoides from Samane Nala, Bugti Hills (Pakistan) and the origin of Merycopotamini (Mammalia: Hippopotamoidea)
Figure 2. A, geographical position of the Samane Nala sector in the Bugti Hills area (Pakistan). B, stratigraphical position of the level Q = 4 in the synthetic section of the Bugti Hills area, together with anthracothere species distribution in the section (Welcomme et al., 2001; Métais et al., 2009; Antoine et al., 2013; Lihoreau et al., 2016; this study). FLA and LLA stand for first local appearance and last local appearance, respectively.
Figure 1 in New material of Parabrachyodus hyopotamoides from Samane Nala, Bugti Hills (Pakistan) and the origin of Merycopotamini (Mammalia: Hippopotamoidea)
Figure 1. Drawings from Forster-Cooper (1915) of A, the first upper dental row (P4/-M3/, M12031) and B, lower molar (M/3, M12030) allocated to the anthracotheriid Parabrachyodus, from the Bugti Hills, Pakistan. Note the high degree of wear and the focus of the author on P4/'s morphology. Scale bars equal 10 mm.
Figure 6. Chrysemys, skull material. A, I, L, C in A new species of Chrysemys (Emydidae: Deirochelyinae) from the latest Miocene-Early Pliocene of Tennessee, USA and its implications for the evolution of painted turtles
Figure 6. Chrysemys, skull material. A, I, L, C. picta (UF 30445) cranial material: A, left maxilla in lateral view; I, lower jaws in dorsal (= occlusal) view; L, left lower jaw in lateral view. B-D, Chrysemys corniculata sp. nov. (ETMNH-20544, paratype) nearly complete left maxilla in lateral view (B), dorsal view (C) and ventral (= occlusal) view (D). E-H, C. corniculata sp. nov. (ETMNH-3559, paratype) incomplete right quadrate in medial view (E), anterior (rostral) view (F), right lateral view (G) and ventral view (H). J-K, M, C. corniculata sp. nov. (ETMNH-12491, holotype) nearly complete lower jaws in dorsal view (J), ventral view (K) and left lower jaws in lateral view (M). Abbreviations: cm, condylus mandibularis; ct, cavum tympani; fdm, foramen dentofaciale majus; fsm, foramen supramaxillare; lr, labial ridge; mr, median ridge; par, processus articularis; pme, posteromedial extension; tr, tomial ridge; ts, triturating surface. Scale bar: 1 cm.
Supplementary materials for "Machine Learning Electronic Structure Methods Based On The One-Electron Reduced Density Matrix"
<p><strong>Supplementary materials for "Machine Learning Electronic Structure Methods Based On The One-Electron Reduced Density Matrix"</strong></p> <p>by X. Shao, L. Paetow, M. E. Tuckerman and M. Pavanello</p> <p><strong>The QMLearn software</strong></p> <p>A current snapshot of the QMLearn software is available on GitLab at https://gitlab.com/pavanello-research-group/qmlearn. Video tutorials and other examples (including Jupyter Notebooks) are available at http://qmlearn.rutgers.edu</p> <p><strong>Data availability</strong></p> <p>We share all training/test sets and notebooks needed to reproduce Table II and Figures 1-7. For all figures, we provide Jupyter notebooks and the needed data to exactly reproduce the figures. Trajectory files for all IR spectra are shared. The collection of all materials is available in this dataset.</p> <p>The QMLearn version used for this work is 0.0.1.</p> <p>Specific QMLearn dependencies and their version used for all calculations are listed as follows:<br> - ase (3.22.1)<br> - h5py (3.7.0)<br> - numpy (1.23.1)<br> - pyscf (2.0.1)<br> - scikit-learn (1.1.1)<br> - scipy (1.8.1)</p>
Supplementary Material for On the Experiences of Practitioners with Requirements Elicitation Techniques
<p>Supplementary Material for the paper entitled "<em>On the Experiences of Practitioners with Requirements Elicitation Techniques</em>".</p> <p><strong>Abstract</strong></p> <p>Requirements elicitation is a crucial process in software engineering, which involves identifying and understanding the needs of stakeholders to define system requirements. Several techniques are used for requirements elicitation, each with unique advantages, disadvantages, and challenges. This paper presents the findings of a survey conducted among 33 practitioners in the software development community to investigate their experiences with requirements elicitation techniques. The results revealed that practitioners find the elicitation process highly challenging due to difficulties managing the relationship between the development team and the client, understanding complex business processes, and the lack of knowledge among stakeholders. The survey also assessed the participants' familiarity with various elicitation techniques. The most well-known techniques were brainstorming, data analysis, use cases, interviews, user stories, and prototyping. In contrast, techniques such as ethnography, Quality Function Deployment (QFD), Joint Application Development (JAD), blueprint, and laddering were less recognized. When providing the pros and cons of some techniques, participants considered techniques' clarity, speed of use, resource cost, and stakeholder involvement. This research contributes to the field by highlighting challenges, providing insights into practitioner experiences, and guiding informed decision-making in requirements elicitation.</p>
Supplemental Material for Manuscript: A Network Approach to Zooarchaeological Datasets and Human-Centered Ecosystems
<p>Supplemental Material for Manuscript: A Network Approach to Zooarchaeological Datasets and Human-Centered Ecosystems</p>
Supplementary material 7 from: Muller E, Dvořák M, Marçais B, Caeiro E, Clot B, Desprez-Loustau M-L, Gedda B, Lundén K, Migliorini D, Oliver G, Ramos AP, Rigling D, Rybníček O, Santini A, Schneider S, Stenlid J, Tedeschini E, Aguayo J, Gomez-Gallego M (2023) Conditions of emergence of the Sooty Bark Disease and aerobiology of Cryptostroma corticale in Europe. In: Jactel H, Orazio C, Robinet C, Douma JC, Santini A, Battisti A, Branco M, Seehausen L, Kenis M (Eds) Conceptual and technical innovations to better manage invasions of alien pests and pathogens in forests. NeoBiota 84: 319-347. https://doi.org/10.3897/neobiota.84.90549
Coefficient estimate for each variable of maple basal area computed for different radius and their 95% credible intervals in brackets for models predicting the number of spores detected per week
Supplementary material 3 from: Muller E, Dvořák M, Marçais B, Caeiro E, Clot B, Desprez-Loustau M-L, Gedda B, Lundén K, Migliorini D, Oliver G, Ramos AP, Rigling D, Rybníček O, Santini A, Schneider S, Stenlid J, Tedeschini E, Aguayo J, Gomez-Gallego M (2023) Conditions of emergence of the Sooty Bark Disease and aerobiology of Cryptostroma corticale in Europe. In: Jactel H, Orazio C, Robinet C, Douma JC, Santini A, Battisti A, Branco M, Seehausen L, Kenis M (Eds) Conceptual and technical innovations to better manage invasions of alien pests and pathogens in forests. NeoBiota 84: 319-347. https://doi.org/10.3897/neobiota.84.90549
Standard curve and its correlation coefficient to determine the limit of detection for the real-time PCR assay in ten-folded DNA solutions of C. corticale mycelium (a) and total number of spores in the qPCR reaction (b)
Supplementary material 5 from: Muller E, Dvořák M, Marçais B, Caeiro E, Clot B, Desprez-Loustau M-L, Gedda B, Lundén K, Migliorini D, Oliver G, Ramos AP, Rigling D, Rybníček O, Santini A, Schneider S, Stenlid J, Tedeschini E, Aguayo J, Gomez-Gallego M (2023) Conditions of emergence of the Sooty Bark Disease and aerobiology of Cryptostroma corticale in Europe. In: Jactel H, Orazio C, Robinet C, Douma JC, Santini A, Battisti A, Branco M, Seehausen L, Kenis M (Eds) Conceptual and technical innovations to better manage invasions of alien pests and pathogens in forests. NeoBiota 84: 319-347. https://doi.org/10.3897/neobiota.84.90549
Zero-centred histogram of the residuals between simulated data and predictions of the model with the distance to the closest disease report as a predictor of the number of Cryptostroma corticale spores detected in aerobiological samples
Supplementary material 2 from: Brockerhoff EG, Gresham BA, Meurisse N, Nahrung HF, Perret-Gentil A, Pugh AR, Sopow SL, Turner RM (2023) Pining away and at home: global utilisation of Pinus radiata by native and non-native insects. In: Jactel H, Orazio C, Robinet C, Douma JC, Santini A, Battisti A, Branco M, Seehausen L, Kenis M (Eds) Conceptual and technical innovations to better manage invasions of alien pests and pathogens in forests. NeoBiota 84: 137-167. https://doi.org/10.3897/neobiota.84.95864
Statistics for Table 2. Statistical tests of proportions out of all species among feeding types for impacts, establishments and interceptions.
Supplementary material 3 from: Brockerhoff EG, Gresham BA, Meurisse N, Nahrung HF, Perret-Gentil A, Pugh AR, Sopow SL, Turner RM (2023) Pining away and at home: global utilisation of Pinus radiata by native and non-native insects. In: Jactel H, Orazio C, Robinet C, Douma JC, Santini A, Battisti A, Branco M, Seehausen L, Kenis M (Eds) Conceptual and technical innovations to better manage invasions of alien pests and pathogens in forests. NeoBiota 84: 137-167. https://doi.org/10.3897/neobiota.84.95864
Numbers (and percentages) of species by impact class, and whether or not they have been intercepted (based on the international interceptions dataset covering the period 1995–2021) or established in a region outside their native range.
Supplementary material 4 from: Muller E, Dvořák M, Marçais B, Caeiro E, Clot B, Desprez-Loustau M-L, Gedda B, Lundén K, Migliorini D, Oliver G, Ramos AP, Rigling D, Rybníček O, Santini A, Schneider S, Stenlid J, Tedeschini E, Aguayo J, Gomez-Gallego M (2023) Conditions of emergence of the Sooty Bark Disease and aerobiology of Cryptostroma corticale in Europe. In: Jactel H, Orazio C, Robinet C, Douma JC, Santini A, Battisti A, Branco M, Seehausen L, Kenis M (Eds) Conceptual and technical innovations to better manage invasions of alien pests and pathogens in forests. NeoBiota 84: 319-347. https://doi.org/10.3897/neobiota.84.90549
Zero-centred histogram of the residuals between simulated data and predictions of the model with the water balance (P-ETP) in the vegetative season (April-August) of the year preceding disease report as a predictor of the standardized record rate of the SBD
Supplementary material 4 from: Brockerhoff EG, Gresham BA, Meurisse N, Nahrung HF, Perret-Gentil A, Pugh AR, Sopow SL, Turner RM (2023) Pining away and at home: global utilisation of Pinus radiata by native and non-native insects. In: Jactel H, Orazio C, Robinet C, Douma JC, Santini A, Battisti A, Branco M, Seehausen L, Kenis M (Eds) Conceptual and technical innovations to better manage invasions of alien pests and pathogens in forests. NeoBiota 84: 137-167. https://doi.org/10.3897/neobiota.84.95864
Percentages of species native to a region in each feeding guild, regardless of impact. Those in the "Native country: other" category are species native to other regions but not to Australia or New Zealand.
Supplementary material 6 from: Muller E, Dvořák M, Marçais B, Caeiro E, Clot B, Desprez-Loustau M-L, Gedda B, Lundén K, Migliorini D, Oliver G, Ramos AP, Rigling D, Rybníček O, Santini A, Schneider S, Stenlid J, Tedeschini E, Aguayo J, Gomez-Gallego M (2023) Conditions of emergence of the Sooty Bark Disease and aerobiology of Cryptostroma corticale in Europe. In: Jactel H, Orazio C, Robinet C, Douma JC, Santini A, Battisti A, Branco M, Seehausen L, Kenis M (Eds) Conceptual and technical innovations to better manage invasions of alien pests and pathogens in forests. NeoBiota 84: 319-347. https://doi.org/10.3897/neobiota.84.90549
Zero-centred histogram of the residuals between simulated data and predictions of the model with the total sycamore maple basal area in a radius of 50 km from the sampler as a predictor of the number of Cryptostroma corticale spores detected in aerobiological samples
Supplementary material 2 from: Colombari F, Battisti A (2023) Citizen science at school increases awareness of biological invasions and contributes to the detection of exotic ambrosia beetles. In: Jactel H, Orazio C, Robinet C, Douma JC, Santini A, Battisti A, Branco M, Seehausen L, Kenis M (Eds) Conceptual and technical innovations to better manage invasions of alien pests and pathogens in forests. NeoBiota 84: 211-229. https://doi.org/10.3897/neobiota.84.95177
Slides of the lecture on 'Monitoring of insect species harmful to trees and forests' and link to educational videos
Supplementary material 2 from: Muller E, Dvořák M, Marçais B, Caeiro E, Clot B, Desprez-Loustau M-L, Gedda B, Lundén K, Migliorini D, Oliver G, Ramos AP, Rigling D, Rybníček O, Santini A, Schneider S, Stenlid J, Tedeschini E, Aguayo J, Gomez-Gallego M (2023) Conditions of emergence of the Sooty Bark Disease and aerobiology of Cryptostroma corticale in Europe. In: Jactel H, Orazio C, Robinet C, Douma JC, Santini A, Battisti A, Branco M, Seehausen L, Kenis M (Eds) Conceptual and technical innovations to better manage invasions of alien pests and pathogens in forests. NeoBiota 84: 319-347. https://doi.org/10.3897/neobiota.84.90549
Isolates which DNA was extracted and used to confirm the specificity of the primers ccITS2F and SBD3R and probe SBD5P
Supplementary material 8 from: Muller E, Dvořák M, Marçais B, Caeiro E, Clot B, Desprez-Loustau M-L, Gedda B, Lundén K, Migliorini D, Oliver G, Ramos AP, Rigling D, Rybníček O, Santini A, Schneider S, Stenlid J, Tedeschini E, Aguayo J, Gomez-Gallego M (2023) Conditions of emergence of the Sooty Bark Disease and aerobiology of Cryptostroma corticale in Europe. In: Jactel H, Orazio C, Robinet C, Douma JC, Santini A, Battisti A, Branco M, Seehausen L, Kenis M (Eds) Conceptual and technical innovations to better manage invasions of alien pests and pathogens in forests. NeoBiota 84: 319-347. https://doi.org/10.3897/neobiota.84.90549
Probability of disease report in an area of 40-km to 130-km radius from the sampler as a function of the number of detected spores per day
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.