Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
30,817
datasets available to search
ShareScore release 0.9.0
Dataset results
30,817 results for “type”
FIGURES 1–8. 1. Pinnularia hustedtii F in Pinnularia hustedtii (Bacillariophyta): Notes on specimens from Wuling Mountains, China and from type material
FIGURES 1–8. 1. Pinnularia hustedtii F.Meister, reproduction of Meister 1935: 102, taf. 9, fig. 82. 2, 3, 4, 6. Specimens of Pinnularia hustedtii from 'Z + ZT Meister 3312040'. Fig. 5 is a reproduction of Pinnularia pseudotabellaria H.Kobayasi in H.Kobayasi & Kaz.Ando 1977: 248, pl. 8, figs 60, 61. Fig. 7 is a reproduction of page from Meister's notebook for 'Z + ZT Meister 3312065, lost holotype. Fig. 8 is a reproduction of page from Meister's notebook for 'Z + ZT Meister 3312040', isotype (specimen in Figs 2–6). Scale bars: 50 μm (Figs 2, 3), 10 μm (Figs 4, 6).
FIGURE 2 in On the type specimens of Pareas macularius Theobald, 1868 and Pareas berdmorei Theobald, 1868 with the designation of a lectotype for Pareas macularius (Squamata: Serpentes: Pareidae)
FIGURE 2. Lectotype of Pareas macularius Theobald, 1868, ZSI 8025. A. General view. –B. Right side of the head.—C. Ventral view. Photographs by Kaushik Deuti.
FIGURE 1 in On the type specimens of Pareas macularius Theobald, 1868 and Pareas berdmorei Theobald, 1868 with the designation of a lectotype for Pareas macularius (Squamata: Serpentes: Pareidae)
FIGURE 1. The original syntypes of Pareas macularius and Pareas berdmorei. A. The three "young" specimens mentioned by Theobald (1868a–b), original syntypes of both of Pareas macularius and Pareas berdmorei, ZSI 8024, ZSI 8025 and ZSI 8026.—B. The two "adult" specimens mentioned by Theobald (1868a–b), ZSI 8021 and ZSI 8022 (top and centre), original syntypes of both of Pareas macularius and Pareas berdmorei, as well as specimen ZSI 8023 (bottom) that does not belong to the type series of either of these species. Photographs by Kaushik Deuti.
FIGURE 3 in On the type specimens of Pareas macularius Theobald, 1868 and Pareas berdmorei Theobald, 1868 with the designation of a lectotype for Pareas macularius (Squamata: Serpentes: Pareidae)
FIGURE 3. Lectotype of Pareas berdmorei Theobald, 1868, ZSI 8022. A. General view. –B. Dorsolateral view of head and fore part of the body.—C. Left side of the head.—D. Ventral view of the head and forepart of the body.—E. Ventral view of the tail. Photographs by Kaushik Deuti.
Dataset from: Diversity of European habitat types is correlated with geography more than climate and human pressure
<p>We generated this dataframe to model EU habitat richness at continental scale as a function of geographical, climate and anthropogenic variables <span><span><span><span><span>(please, see Material and Method section in the published paper version for all the details)</span></span></span></span></span>. We found geographical variables were by far the most strongly correlated with habitat richness, followed by climate. However, anthropogenic variables gained importance when consindering their interactions, with important implications for conservation planning.</p>
FIGURE 22. A in Catalogue of type specimens of Peiratinae (Hemiptera: Heteroptera: Reduviidae) preserved in the Muséum National d'Histoire Naturelle, Paris
FIGURE 22. A, Paratype ♀ of Ectomocoris xanthopus var. differens Villiers, 1964; B, Paratype ♀ of Ectomocoris xanthopus var. scutellatus Villiers, 1964. Scale bars: 3 mm.
Dataser from paper "Proliferation of osteoblast precursor cells on the surface of TiO2 nanowires anodically grown on a -type biomedical titanium alloy"
<p>Dataser from paper "Proliferation of osteoblast precursor cells on the surface of TiO2 nanowires anodically grown on a -type biomedical titanium alloy":</p> <p>- <strong>Contact Angle: </strong>Images and measurements.</p> <p><strong>- Fluorescence Microscopy Images:</strong> Images.</p> <p><strong>- MTT and pixel counting:</strong> Measurements.</p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p>
Predictive modeling for clinical features associated with Neurofibromatosis Type 1
<p>Objective: Perform a longitudinal analysis of clinical features associated with Neurofibromatosis Type 1 (NF1) based on demographic and clinical characteristics, and to apply a machine learning strategy to determine feasibility of developing exploratory predictive models of optic pathway glioma (OPG) and attention-deficit/hyperactivity disorder (ADHD) in a pediatric NF1 cohort.</p> <p>Methods: Using NF1 as a model system, we perform retrospective data analyses utilizing a manually-curated NF1 clinical registry and electronic health record (EHR) information, and develop machine-learning models. Data for 798 individuals were available, with 578 comprising the pediatric cohort used for analysis.</p> <p>Results: Males and females were evenly represented in the cohort. White children were more likely to develop OPG (OR: 2.11, 95%CI: 1.11-4.00, p=0.02) relative to their non-white peers. Median age at diagnosis of OPG was 6.5 years (1.7-17.0), irrespective of sex. Males were more likely than females to have a diagnosis of ADHD (OR: 1.90, 95%CI: 1.33-2.70, p<0.001), and earlier diagnosis in males relative to females was observed. The gradient boosting classification model predicted diagnosis of ADHD with an AUROC of 0.74, and predicted diagnosis of OPG with an AUROC of 0.82.</p> <p>Conclusions: Using readily available clinical and EHR data, we successfully recapitulated several important and clinically-relevant patterns in NF1 semiology specifically based on demographic and clinical characteristics. Naïve machine learning techniques can be potentially used to develop and validate predictive phenotype complexes applicable to risk stratification and disease management in NF1.</p>
FIGURE. Distribution of Thalictrum atriplex. Blue arrow indicates the type locality of T. atriplex, i.e. Kangding county in western Sichuan, China; black arrow indicates the type locality of T. spiristylum (= T. atriplex), i.e. Ninglang county in northwestern Yunnan, China. in Thalictrum spiristylum (Ranunculaceae), described from northwestern Yunnan, China, is merged with T. atriplex
FIGURE. Distribution of Thalictrum atriplex. Blue arrow indicates the type locality of T. atriplex, i.e. Kangding county in western Sichuan, China; black arrow indicates the type locality of T. spiristylum (= T. atriplex), i.e. Ninglang county in northwestern Yunnan, China.
FIGURE. Thalictrum atriplex in the wild (Kangding county in western Sichuan, China, the type locality). A. Habitat. B. Habit. C. Roots. D. Portion of stem. E. Leaf (left: adaxial side; right: abaxial side). F. Leaflet (adaxial side). G. Portion of inflorescence. H. Flower. I. Sepal (left: adaxial side; right: abaxial side). J. Stamens. K. Carpels. L. Aggregate fruits (immature). M. Achenes (immature). Photographed by Y.P. Zeng. in Thalictrum spiristylum (Ranunculaceae), described from northwestern Yunnan, China, is merged with T. atriplex
FIGURE. Thalictrum atriplex in the wild (Kangding county in western Sichuan, China, the type locality). A. Habitat. B. Habit. C. Roots. D. Portion of stem. E. Leaf (left: adaxial side; right: abaxial side). F. Leaflet (adaxial side). G. Portion of inflorescence. H. Flower. I. Sepal (left: adaxial side; right: abaxial side). J. Stamens. K. Carpels. L. Aggregate fruits (immature). M. Achenes (immature). Photographed by Y.P. Zeng.
FIGURE. Flowering (A) and fruiting (B) specimens of Thalictrum spiristylum (= T. atriplex) from the exact type locality, i.e. Shuicaoba in Ninglang county in northwestern Yunnan, China. A. Y.P. Zeng & Y.F. Luo 495 (IBSC). B. Y.P. Zeng 590 (IBSC). in Thalictrum spiristylum (Ranunculaceae), described from northwestern Yunnan, China, is merged with T. atriplex
FIGURE. Flowering (A) and fruiting (B) specimens of Thalictrum spiristylum (= T. atriplex) from the exact type locality, i.e. Shuicaoba in Ninglang county in northwestern Yunnan, China. A. Y.P. Zeng & Y.F. Luo 495 (IBSC). B. Y.P. Zeng 590 (IBSC).
NICAM AMIP-type simulation data for the article "Deceleration of Madden–Julian Oscillation Speed in NICAM AMIP-type Simulation Associated with Biases in the Walker Circulation Strength"
<p>This data set includes data from 30-year integration on nonhydrostatic icosahedral atmospheric model (NICAM) following an atmospheric model intercomparison project (AMIP) protocol with a slab ocean model from 1 June 1978 to 6 January 2009 (c.f. Kodama et al. 2015), and their GrADs description ctl files. All outputs are daily averages on 2.5 x 2.5 degrees resolution. Output variables are outgoing longwave radiation (W m<sup>-2</sup>), skin temperature (K), sea surface temperature (K), and zonal wind (m s<sup>-1</sup>) on pressure levels.</p>
Figure 1 in Sorry atlanticus, you are not my type: molecular assessment splits Zophoscolex (Lumbricidae: Crassiclitellata) into French and Iberian genera
Figure 1. Detail of the clades including the Zophoscolex species under study by Bayesian phylogenetic analysis of the concatenated sequence of molecular markers COI–COII–16S–tRNAs–ND1–12S–28S. Focus species of are shown in bold. Proposed taxonomic changes are shown in grey. Posterior probability support values and bootstrap support values (from maximum likelihood analysis) higher than 70 are shown beside the corresponding nodes. The complete phylogenetic tree is shown in Supporting Information, Figure S1.
FIGURE 1 in Type specimens of vascular plants in the herbarium of the National Institute of Biological Resources (II)
FIGURE 1. Type specimens in the herbarium of the National Institute of Biological Resources. 1. Asplenium ×bimixtum, 2. Asplenium ×uiryeongse, 3. Anemone pendulisepala, 4. Broussonetia ×hanjiana, 5. Pseudostellaria baekdusanensis, 6. Pseudostellaria ×bohyeonsanensis, 7. Pseudostellaria palibiniana var. gageodoensis, 8. Pseudostellaria ×segeolsanensis, 9. Viola breviflora.
Allele-specific chromatin accessibility for 23 cancer types and weight files for Regulome Wide Association-Studies (RWAS)
<p><strong>stratAS_results.tar.gz</strong></p> <p>This folder contains the results of analyses of allele-specific chromatin accessibility for 23 cancer types + pan-cancer using the stratAS software. The analyses identified allelically imbalanced genomic regions from 406 cancer ATAC-Seq samples. The files are named after each cancer type (or “pancancer” for the pan-cancer analysis) and contain the following columns:</p> <p>CHR - Chromosome<br> POS - Position of test<br> SNP RSID - ID of test SNP<br> P0 - Start of gene/peak<br> P1 - End of gene/peak<br> NAME - Name of gene/peak<br> CENTER - Center position of peak (or TSS for gene)<br> N.HET - Number of heterozygous individuals tested N.READS - Number of reads tested in total<br> ALL.AF - Allelic fraction estimate from beta binomial test across both conditions<br> ALL.BBINOM.P - Beta-binomial test for imbalance across both conditions<br> C0.AF - Allelic fraction estimate from condition 0<br> C0.BBINOM.P - Beta-binomial test for imbalance in condition 0<br> C1.AF - Allelic fraction estimate from condition 1<br> C1.BBINOM.P - Beta-binomial test for imbalance in condition 1<br> DIFF.BBINOM.P - Beta-binomial test for difference between conditions<br> IND.C0 - Number of each condition 0 individual included in this test (comma separated)<br> IND.C0.COUNT.REF - condition 0 REF allele counts of each individual included in this test (comma separated)<br> IND.C0.COUNT.ALT - condition 0 ALT allele counts of each individual included in this test (comma separated)<br> IND.C1 - Number of each condition 1 individual included in this test (comma separated)<br> IND.C1.COUNT.REF - condition 1 REF allele counts of each individual included in this test (comma separated)<br> IND.C1.COUNT.ALT - condition 1 ALT allele counts of each individual included in this test (comma separated)</p> <p>In our analysis, samples that belong to a cancer type that is analyzed for allelic imbalance are assigned to Condition 1 (C1) while samples belonging to the remaining 22 cancer types are assigned to Condition 0 (C0). For the pan-cancer analysis, samples from all 23 cancer types are assigned to C1. P-values denoting the significance of allelic imbalance in a given cancer type (or pan-cancer analysis) are listed in the column C1.BBINOM.P. P-values denoting the significance of differential allelic imbalance between a given cancer type and the remaining 22 cancer types are listed in column DIFF.BBINOM.P (set to NA for pan-cancer analysis since all samples are assigned to C1).</p> <p>More information about stratAS and its output format can be found at https://github.com/gusevlab/stratAS.</p> <p>The conducted analyses are described in detail in the methods section of Grishin D. and Gusev A. Allelic imbalance of chromatin accessibility in cancer identifies candidate causal risk variants and their mechanisms (2022).</p> <p><strong>RWAS_weights.tar.gz</strong></p> <p>This folder contains weight files that can be used together with GWAS summary statistics to conduct Regulome Wide Association-Studies (RWAS) using the FUSION software package.</p> <p>Each weight file corresponds to a single accessible element in the FUSION format. Instructions on how to use FUSION for RWAS can be found at http://gusevlab.org/projects/fusion/. RWAS is conducted in the same manner as TWAS using these RWAS weights.</p> <p>The weight files were generated using a pan-cancer peak set. A BED file containing pan-cancer peaks can be found in the peaks_hg19 folder along with other BED files containing cancer-type specific peaks. Cancer-type specific peak files can be used to restrict the RWAS analysis to regulatory elements active in specific cancer types.</p> <p>The conducted analyses are described in detail in the methods section of Grishin D. and Gusev A. Allelic imbalance of chromatin accessibility in cancer identifies candidate causal risk variants and their mechanisms (2022).</p>
FIGURE. Floral habit and structure of C. spongifolia. A. Type specimen in situ with open, spathe limb (apex is reflexed out of view), and green spathe tube (ca. 6 cm long). B. Adjacent plant with inflorescences and prophylls. C. Spadix showing from top: sterile appendix, staminate (male) zone, sterile interstice, and green pistillate (female) zone with tapered, conical form. D. Detail of female zone showing a few basal staminodes. E–G. Berries of the preserved type specimen. G. Dissected berry with orthotropous ovules (some outlined) attached by funicles to parietal placentae (arrows). H. Surface of male zone showing closely-packed synandria. I. Synandria separated to show fused anther sacs beneath apical pores (example in center has 8 pores, 8 anthers) J. Mature fruiting head, with single berry removed to show seed packing and 67 seeds extracted (scale bar units: 1 mm) (Bach Ma NP; type 2020; fruit and seeds 2018). Photos: NVD and PJM. in Colocasia spongifolia sp. nov. (Araceae) in southern China and central Vietnam
FIGURE. Floral habit and structure of C. spongifolia. A. Type specimen in situ with open, spathe limb (apex is reflexed out of view), and green spathe tube (ca. 6 cm long). B. Adjacent plant with inflorescences and prophylls. C. Spadix showing from top: sterile appendix, staminate (male) zone, sterile interstice, and green pistillate (female) zone with tapered, conical form. D. Detail of female zone showing a few basal staminodes. E–G. Berries of the preserved type specimen. G. Dissected berry with orthotropous ovules (some outlined) attached by funicles to parietal placentae (arrows). H. Surface of male zone showing closely-packed synandria. I. Synandria separated to show fused anther sacs beneath apical pores (example in center has 8 pores, 8 anthers) J. Mature fruiting head, with single berry removed to show seed packing and 67 seeds extracted (scale bar units: 1 mm) (Bach Ma NP; type 2020; fruit and seeds 2018). Photos: NVD and PJM.
FIGURE 31 in The type material of spider wasps (Hymenoptera, Pompilidae) deposited in the Federal Scientific Center of the East Asia Terrestrial Biodiversity, Russian Academy of Sciences, Vladivostok, Russia
FIGURE 31. Telostholus rinjani Loktionov & Lelej, 2019, ♀, holotype. A. Labels. B. Habitus, lateral view. C. Head, lateral view. D. Head, dorsal view. E. Head, frontal view. Scale bar: 1.0 mm for B; 0.2 mm for C, D, E. All from Loktionov & Lelej 2019.
FIGURE 30 in The type material of spider wasps (Hymenoptera, Pompilidae) deposited in the Federal Scientific Center of the East Asia Terrestrial Biodiversity, Russian Academy of Sciences, Vladivostok, Russia
FIGURE 30. Dipogon (Stigmatodipogon) khinganicus (Kochetkov & Loktionov, 2019), ♀, holotype. A. Labels. B. Habitus, dorsal view. C. Head, lateral view. D. Head, dorsal view. E. Head, frontal view. Scale bar: 1.0 mm for B; 0.2 mm for C, D; 0.1 mm for E. All from Kochetkov & Loktionov 2019.
FIGURE 27 in The type material of spider wasps (Hymenoptera, Pompilidae) deposited in the Federal Scientific Center of the East Asia Terrestrial Biodiversity, Russian Academy of Sciences, Vladivostok, Russia
FIGURE 27. Priocnemis sugonjaevi Lelej & Loktionov, 2015, ♂, holotype. A. Labels. B. Habitus, dorsal view. C. Head, lateral view. D. Head, dorsal view. E. Head, frontal view. F. Hypopygium and sternum 7, ventral view. G. Genitalia, ventral view. Scale bar: 1.0 mm for B; 0.2 mm for C, D, E, F, G. F, G from Loktionov et al. 2015.
FIGURE 22 in The type material of spider wasps (Hymenoptera, Pompilidae) deposited in the Federal Scientific Center of the East Asia Terrestrial Biodiversity, Russian Academy of Sciences, Vladivostok, Russia
FIGURE 22. Deuteragenia lehri Loktionov & Lelej, 2014, ♀, holotype. A. Labels. B. Habitus, lateral view. C. Head, lateral view. D. Head, dorsal view. E. Head, frontal view. Scale bar: 1.0 mm for B; 0.2 mm for C, D, E.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.