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Supplementary material 4 from: Yang C, Du X, Liu Y, Yuan H, Wang Q, Hou X, Gong H, Wang Y, Huang Y, Li X, Ye H (2022) Comparative mitogenomics of the genus Motacilla (Aves, Passeriformes) and its phylogenetic implications. ZooKeys 1109: 49-65. https://doi.org/10.3897/zookeys.1109.81125
Figure S4
Supplementary material 3 from: Yang C, Du X, Liu Y, Yuan H, Wang Q, Hou X, Gong H, Wang Y, Huang Y, Li X, Ye H (2022) Comparative mitogenomics of the genus Motacilla (Aves, Passeriformes) and its phylogenetic implications. ZooKeys 1109: 49-65. https://doi.org/10.3897/zookeys.1109.81125
Figure S3
Supplementary material 5 from: Zhang R, Deng L, Lv X, Tang Q (2022) Complete mitochondrial genomes of two catfishes (Siluriformes, Bagridae) and their phylogenetic implications. ZooKeys 1115: 103-116. https://doi.org/10.3897/zookeys.1115.85249
Table S3. Number of codons in T. brachyrhabdion (TB) and T. gracilis (TG) for mitochondrial PCGs
Supplementary material 1 from: Zhang R, Deng L, Lv X, Tang Q (2022) Complete mitochondrial genomes of two catfishes (Siluriformes, Bagridae) and their phylogenetic implications. ZooKeys 1115: 103-116. https://doi.org/10.3897/zookeys.1115.85249
Figure S1. Predicted tRNA structures of Tachysurus brachyrhabdion
Supplementary material 3 from: Zhang R, Deng L, Lv X, Tang Q (2022) Complete mitochondrial genomes of two catfishes (Siluriformes, Bagridae) and their phylogenetic implications. ZooKeys 1115: 103-116. https://doi.org/10.3897/zookeys.1115.85249
Table S1. Primers used for PCR
Supplementary material 4 from: Zhang R, Deng L, Lv X, Tang Q (2022) Complete mitochondrial genomes of two catfishes (Siluriformes, Bagridae) and their phylogenetic implications. ZooKeys 1115: 103-116. https://doi.org/10.3897/zookeys.1115.85249
Tables S2. Species, GenBank accession number and length of mitogenomes used in this study
Supplementary material 2 from: Zhang R, Deng L, Lv X, Tang Q (2022) Complete mitochondrial genomes of two catfishes (Siluriformes, Bagridae) and their phylogenetic implications. ZooKeys 1115: 103-116. https://doi.org/10.3897/zookeys.1115.85249
Figure S2. Predicted tRNA structures of Tachysurus gracilis
Supplementary material 2 from: Praz C, Genoud D, Vaucher K, Bénon D, Monks J, Wood TJ (2022) Unexpected levels of cryptic diversity in European bees of the genus Andrena subgenus Taeniandrena (Hymenoptera, Andrenidae): implications for conservation. Journal of Hymenoptera Research 91: 375-428. https://doi.org/10.3897/jhr.91.82761
Table S2. List of all examined specimens.
Plume-induced rifting of thickened crust: 2D numerical model and implications for N–S rifts in southern Tibet
<p>The data for numerical model results of plume induced crust rifting </p>
FIG. 20 in Fossil wood from the lower Miocene of Myanmar (Natma Formation): palaeoenvironmental and biogeographic implications
FIG. 20. — Indet. sp. 1, MNHN.F.50199 (A-F): A, Ts, vessels and few vasicentric parenchyma, solitary secretory canals (arrows) or in short tangential lines, surrounded by parenchyma, remarkably bigger than vessels; B, C, Tls, 1-4-seriate rays with sometimes long uniseriate row of marginal cells (arrow); D, Tls, parenchyma cells (white arrow) and secretory canal (black arrow); E, Tls, detail of secretory canals in short tangential line; F, Rls, heterocellular rays with procumbent cells (black arrow) and square or upright cells (white arrow). G-J, Indet. sp. 2, MNHN.F.50200: G, Ts, poorly preserved wood, vessel arrangement often in groups; H-I, Tls, 1-5-seriate rays, with maybe sheath cells (arrows); J, Rls, heterocellular rays with procumbent and square or upright cells. Scale bars: A, G, 1 mm; B, H, 500 µm; C-F, I-J, 200 µm. Abbreviations: see Fig. 2.
FIG. 2 in Fossil wood from the lower Miocene of Myanmar (Natma Formation): palaeoenvironmental and biogeographic implications
FIG. 2. — Cupressinoxylon sp. MNHN.F.50171: A, transverse section (Ts), growth limits (white arrows), diffuse parenchyma (grey arrows) and zonate parenchyma (black arrows), large black areas are cells filled with deposit material; B, Ts, growth limit with gradual transition from earlywood to latewood; C, tangential longitudinal section (Tls), 1- sometimes 2-seriate rays and parenchyma lines (arrow); D, Tls, detail of 1- sometimes 2-seriate rays; E, Tls, smooth longitudinal parenchyma walls (arrows); F, Tls, 1-2-seriate rays and tangential pits (arrows); G, radial longitudinal section (Rls), possibly cupressoid and/or podocarpoid crossfield pits (arrow); H, Rls, uniseriate radial pits; I, Rls, smooth parenchyma cell walls. Scale bars: A, C, 1 mm; B, 200 µm; E-F, H, 100 µm; G, 50 µm; I, 20 µm.
Text-fig. 6. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a: Volume rendering of flower in apical view showing five narrow calyx lobes; note that the apical part of the five-angled style is sealed (arrow). b: Volume rendering of flower (cut at orthoslice xy0796) showing transverse sections of calyx lobes with three distinct bundles indicated by arrows in one of the lobes, ovary wall (ow) and central placenta (pl) bearing numerous ovules (ov). c, d: Transverse sections of style (c, orthoslice xy0153; d, orthoslice xy0222) showing five angled form, sealed near apex (c) and with prominent central canal further farther down (d). e: Volume rendering of flower (cut at orthoslice xz1024) in longitudinal section showing calyx, semi-inferior ovary with ovary wall (ow), and central placenta (pl) bearing numerous ovules (ov). Specimen, Mira 100-S153145 (a–d). Scale bars = 600 µm (a, b, e), 100 µm (c, d). in Early Flowers Of Primuloid Ericales From The Late Cretaceous Of Portugal And Their Ecological And Phytogeographic Implications
Text-fig. 6. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a: Volume rendering of flower in apical view showing five narrow calyx lobes; note that the apical part of the five-angled style is sealed (arrow). b: Volume rendering of flower (cut at orthoslice xy0796) showing transverse sections of calyx lobes with three distinct bundles indicated by arrows in one of the lobes, ovary wall (ow) and central placenta (pl) bearing numerous ovules (ov). c, d: Transverse sections of style (c, orthoslice xy0153; d, orthoslice xy0222) showing five angled form, sealed near apex (c) and with prominent central canal further farther down (d). e: Volume rendering of flower (cut at orthoslice xz1024) in longitudinal section showing calyx, semi-inferior ovary with ovary wall (ow), and central placenta (pl) bearing numerous ovules (ov). Specimen, Mira 100-S153145 (a–d). Scale bars = 600 µm (a, b, e), 100 µm (c, d).
Text-fig. 4. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Transverse (a) and longitudinal (b) sections of flower showing the ovary wall (ow) and numerous ovules (ov) borne on the mushroom-shaped central globose placenta (pl, blue); placenta shown as a voltex rendering added to orthoslices; note the large openings in the floral tissue (asterisks) interpreted as schizogenous secretory cavities. c, d: Longitudinal (c) and transverse (d) sections of flower (c, volume rendering cut between orthoslice yz0970-1005; d, volume rendering cut between orthoslice xy0780-0820) showing semiinferior ovary (ow, ovary wall) with sepals inserted at the rim of the hypanthium, central column (cc) with mushroom-shaped globose placenta (pl) bearing numerous ovules (ov). Specimens, Mira 100-S153146 (a, b), Mira 100-S170155 (c, d, holotype). Scale bars = 600 µm (a–d). in Early Flowers Of Primuloid Ericales From The Late Cretaceous Of Portugal And Their Ecological And Phytogeographic Implications
Text-fig. 4. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Transverse (a) and longitudinal (b) sections of flower showing the ovary wall (ow) and numerous ovules (ov) borne on the mushroom-shaped central globose placenta (pl, blue); placenta shown as a voltex rendering added to orthoslices; note the large openings in the floral tissue (asterisks) interpreted as schizogenous secretory cavities. c, d: Longitudinal (c) and transverse (d) sections of flower (c, volume rendering cut between orthoslice yz0970-1005; d, volume rendering cut between orthoslice xy0780-0820) showing semiinferior ovary (ow, ovary wall) with sepals inserted at the rim of the hypanthium, central column (cc) with mushroom-shaped globose placenta (pl) bearing numerous ovules (ov). Specimens, Mira 100-S153146 (a, b), Mira 100-S170155 (c, d, holotype). Scale bars = 600 µm (a–d).
Text-fig. 17. Biostratigraphic correlations of Moghara, Egypt, and Gebel Zelten, Libya, with inferred age ranges in millions of years. ELMA – European Land Mammal Age (MN – Mammal Neogene Zone) (Mein 1989), FS – East African Faunal Set (Pickford 1981). The double-headed arrow is the range of ages obtained by Strontium isotope dating analyses (Hassan et al. 2013). in New Suoid Fossils (Mammalia, Artiodactyla) From The Miocene Of Moghara, Egypt, And Gebel Zelten, Libya: Biochronological Implications
Text-fig. 17. Biostratigraphic correlations of Moghara, Egypt, and Gebel Zelten, Libya, with inferred age ranges in millions of years. ELMA – European Land Mammal Age (MN – Mammal Neogene Zone) (Mein 1989), FS – East African Faunal Set (Pickford 1981). The double-headed arrow is the range of ages obtained by Strontium isotope dating analyses (Hassan et al. 2013).
Figure 5. A in Description, biology and conservation of a new species of Australian tree frog (Amphibia: Anura: Hylidae: Litoria) and an assessment of the remaining populations of Litoria genimaculata Horst, 1883: systematic and conservation implications of an unusual speciation event
Figure 5. A representation of the difference in morphology between male Litoria genimaculata and Litoria myola sp. nov. The box plots compare morphology of L. genimaculata from across the Wet Tropics, L. genimaculata from the Kuranda area, and L. myola sp. nov. PC1 accounts for 87.8% of the variation in morphology (SVL, TL, HW, and weight) across L. genimaculata and L. myola sp. nov. PC1 is loaded equally and positively by all four characters (approximately 0.94 for each) and therefore represents body size. The box plots show the median, 25th and 75th quartiles, and minimum and maximum data of PC1.
Figure 4. A in Description, biology and conservation of a new species of Australian tree frog (Amphibia: Anura: Hylidae: Litoria) and an assessment of the remaining populations of Litoria genimaculata Horst, 1883: systematic and conservation implications of an unusual speciation event
Figure 4. A representation of the difference in call between Litoria genimaculata and Litoria myola sp. nov. The box plots compare calls of L. genimaculata from across the Wet Tropics, L. genimaculata from the Kuranda area, and L. myola sp. nov. PC1 accounts for 67.2% of the variation in call (duration, dominant frequency and note rate) across L. genimaculata and L. myola sp. nov. PC1 is loaded heavily by inverse call duration (0.95) and note rate (0.93), and moderately by dominant frequency (0.51). The box plots show the median, 25th and 75th quartiles, and minimum and maximum data of PC1.
Figure 6 in Description, biology and conservation of a new species of Australian tree frog (Amphibia: Anura: Hylidae: Litoria) and an assessment of the remaining populations of Litoria genimaculata Horst, 1883: systematic and conservation implications of an unusual speciation event
Figure 6. The distribution of Litoria myola sp. nov. and Litoria genimaculata in the Kuranda area. The pie charts show the proportion of L. myola sp. nov. (black) and L. genimaculata (grey) individuals on five streams. Nearby sites on the streams are grouped together to provide a consistent scale. Sample size for the pie charts averages 20 individuals. The squares show additional sites where L. myola sp. nov. (black squares) and L. genimaculata (grey squares) have been recorded but relative proportions of each have not been determined. All L. genimaculata are northern lineage individuals. Major stream catchments flowing into the Barron River are marked. The sections of stream without records of either species are either unsuitable habitat or have not yet been surveyed. Sites surrounding this area are occupied by northern lineage L. genimaculata or are unsuitable habitat (Fig. 1).
FIGURE 2 in Implication of variable characters for the taxonomy of Altiphylax stoliczkai (Steindachner, 1867) and Altiphylax yarkandensis (Anderson, 1872) (Reptilia: Gekkonidae) with comments on the ZSI ' syntype' of the latter taxon'
FIGURE 2. Small subfemoral scales of ZSI 3799 (A) versus larger subfemorals of ZSI 3767 (B).
FIGURE 1 in Implication of variable characters for the taxonomy of Altiphylax stoliczkai (Steindachner, 1867) and Altiphylax yarkandensis (Anderson, 1872) (Reptilia: Gekkonidae) with comments on the ZSI ' syntype' of the latter taxon'
FIGURE 1. Dorsal (A) and ventral (B) view of ZSI 3792.
Supplementary material 1 from: Bani B, Ulusoy F, Karakaya MA, Koch MA (2016) Taxonomic implications from morphological and anatomical studies in the section Stenodiptera from the genus Grammosciadium (Apiaceae). PhytoKeys 68: 73-89. https://doi.org/10.3897/phytokeys.68.9089
Herbarium specimens of members of section Stenodiptera distributed in Turkey :
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.