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Supplementary material 1 from: Koureas D, Livermore L, Addink W, Alonso E, Alonso JM, Casino A, Dusoulier F, Ferreira V, Grieb J, Groom Q, Islam S, Kõljalg U, Lymer G, Marhold K, Paleco C, Pijls S, Scory S, Scott B, Weiland C, Worley K (2024) DiSSCo Transition Abridged Grant Proposal. Research Ideas and Outcomes 10: e118241. https://doi.org/10.3897/rio.10.e118241
Letter of Intent for Collaboration: Development of a Global Partnership on Persistent Identification of Digital Extended Specimens & other Natural Science Collections Data Entities
FIGURE 10. A hybrid between Kalanchoe daigremontiana and K in Aspects of the taxonomy of the Kalanchoe daigremontiana species complex (Crassulaceae subfam. Kalanchooideae) and associated interspecific hybrids in southern Madagascar, with the description of a new nothospecies, K. ×descoingsii (=K. laetivirens × K. tubiflora)
FIGURE 10. A hybrid between Kalanchoe daigremontiana and K. laxiflora, created and cultivated, in Israel. A. Young plant in vegetative growth, showing some peltate leaves and almost exclusively mid-green colouration. B. A mature plant (top) compared to K. daigremontiana (bottom), showing heterosis with both leaf size and plant height greatly exceeding that of either parent. No bulbil pedestals are present, and a single bulbil is visible at the leaf apex. C. Close up of the abaxial leaf blade surface almost devoid of the dark purple-brown stripes characteristic of K. daigremontiana. D. Deep red flowers with a calyx tube longer than the free sepal segments. Photographs: Ronen Shtein.
FIGURE. Conlarium sichuanense (HKAS 113024, holotype) a–c Colonies on dead branches. d–k Conidiogenous cells and conidia. l Germinated conidium. m, n Colony on PDA from surface and reverse. Scale bars: d-k = 10 μm, l = 20 μm. in Conlarium sichuanense sp. nov., on Ficus virens from Sichuan Province, China
FIGURE. Conlarium sichuanense (HKAS 113024, holotype) a–c Colonies on dead branches. d–k Conidiogenous cells and conidia. l Germinated conidium. m, n Colony on PDA from surface and reverse. Scale bars: d-k = 10 μm, l = 20 μm.
Supplementary material 10 from: Mahima K, Umapathy S, Sudhakar JV, Sathishkumar R (2021) Systematic reinstatement of highly sacred Ficus krishnae based on differences in morphology and DNA barcoding from Ficus benghalensis (Moraceae). PhytoKeys 186: 121-138. https://doi.org/10.3897/phytokeys.186.74086
Figure S5. Maximum Clade Credibility (MCC) tree from Bayesian analysis using the trnH-psbA DNA barcode marker with posterior probabilities values in percentage that are shown at nodes.
FIGURE. Microscopic structures of Gloeocantharellus salmonicolor (TH0817, holotype). a. Pileipellis with gloeoplerous hypha. b. Ornamented basidiospores drawn in surface view or optical section. c. Gloeocystidia. d. Basidia at different developmental stages. Bars = 10 µm. Drawings by K. Reschke. in New and interesting species of Agaricomycetes from Panama
FIGURE. Microscopic structures of Gloeocantharellus salmonicolor (TH0817, holotype). a. Pileipellis with gloeoplerous hypha. b. Ornamented basidiospores drawn in surface view or optical section. c. Gloeocystidia. d. Basidia at different developmental stages. Bars = 10 µm. Drawings by K. Reschke.
FIGURE. Microscopic structures of Humidicutis roseorubra (KaiR621, holotype). a. Pileipellis and upper pileitrama. b. Basidia with toruloid clamps at different developmental stages. c. Basidiospores. Bars a = 20 µm, b, c = 10 µm. Drawings by K. Reschke. in New and interesting species of Agaricomycetes from Panama
FIGURE. Microscopic structures of Humidicutis roseorubra (KaiR621, holotype). a. Pileipellis and upper pileitrama. b. Basidia with toruloid clamps at different developmental stages. c. Basidiospores. Bars a = 20 µm, b, c = 10 µm. Drawings by K. Reschke.
FIGURE. Microscopic structures of Gliophorus roseus (PAN612, holotype). a. Upper part of pileipellis, gelatinous matrix not indicated. b. Basidiospores. c. Ixo-cheilocystidia in a gelatinous matrix (not indicated). d. Basidia at different developmental stages. Bars = 10 µm. Drawings by K. Reschke. in New and interesting species of Agaricomycetes from Panama
FIGURE. Microscopic structures of Gliophorus roseus (PAN612, holotype). a. Upper part of pileipellis, gelatinous matrix not indicated. b. Basidiospores. c. Ixo-cheilocystidia in a gelatinous matrix (not indicated). d. Basidia at different developmental stages. Bars = 10 µm. Drawings by K. Reschke.
FIGURE. Puccinia klugkistiana on Ligustrum obtusifolium (A–F, N, O, P) and Cleistogenes hackelii (G–N). A. Plant hedges producing spermogonia and aecia in the field. B. Spermogonia on the upper leaf surface. C. Vertical section of an aecium surrounded with peridia. D. Aecia on the lower leaf surface. E. Vertical section of a spermogonium. F. Aeciospores. G. Uredinia on the leaf surface. H. Vertical section of a uredinium. I. Urediniospores. J, K. Telia on the leaf surface. L. Teliospores. M. Urediniospore observed under SEM. N. Vertical section of an uredinium observed under SEM. O. Aecium observed under SEM. P. Aeciospores with various sizes of verrucae on the surface observed under SEM. Scale bars: C = 100 μm, E, F = 20 μm, H, I = 30 μm, M = 5 μm, P = 10 μm, H, L, O = 40 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia klugkistiana on Ligustrum obtusifolium (A–F, N, O, P) and Cleistogenes hackelii (G–N). A. Plant hedges producing spermogonia and aecia in the field. B. Spermogonia on the upper leaf surface. C. Vertical section of an aecium surrounded with peridia. D. Aecia on the lower leaf surface. E. Vertical section of a spermogonium. F. Aeciospores. G. Uredinia on the leaf surface. H. Vertical section of a uredinium. I. Urediniospores. J, K. Telia on the leaf surface. L. Teliospores. M. Urediniospore observed under SEM. N. Vertical section of an uredinium observed under SEM. O. Aecium observed under SEM. P. Aeciospores with various sizes of verrucae on the surface observed under SEM. Scale bars: C = 100 μm, E, F = 20 μm, H, I = 30 μm, M = 5 μm, P = 10 μm, H, L, O = 40 μm.
FIGURE. Puccinia phragmitis on Rumex patientia (A–E, I, K) and Phragmites australis (F–H, J). A, B Spermogonia and aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Vertical section of an aecium surrounded with peridia. E. Aeciospores. F, G. Telia on the leaf surface. H. Teliospores. I. Aecium observed under SEM. J. Vertical section of a telium. K. Aeciospores with various sizes of verrucae on the surface observed under SEM. Scale bars: C, D, E = 30 μm, H = 10 μm, I = 100 μm, J = 20 μm, K = 3 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia phragmitis on Rumex patientia (A–E, I, K) and Phragmites australis (F–H, J). A, B Spermogonia and aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Vertical section of an aecium surrounded with peridia. E. Aeciospores. F, G. Telia on the leaf surface. H. Teliospores. I. Aecium observed under SEM. J. Vertical section of a telium. K. Aeciospores with various sizes of verrucae on the surface observed under SEM. Scale bars: C, D, E = 30 μm, H = 10 μm, I = 100 μm, J = 20 μm, K = 3 μm.
FIGURE. Puccinia miscanthi on Plantago asiatica (A–H) and Miscanthus sacchariflorus (I–Q). A. Plants producing spermogonia and aecia on the leaf surface. B. Spermogonia on the leaf surface. C. Aecia on lower leaf surface. D. Vertical section of a spermogonium. E. Aeciospores. F. Vertical section of an aecium observed under SEM. G. Aeciospores with verrucose surface observed by SEM. H. Vertical section of an aecium surrounded by peridia. I. Plants producing uredinia on the leaf surface in the field. J. Vertical section of an uredinium with paraphyses. K. Urediniospores. L. Uredinia on the leaf surface. M. Uredinium on the leaf surface observed under SEM. N. Urediniospore with echinulate surface observed under SEM. O. Telia on the leaf surface. P. Vertical section of a telium. Q. Teliospores. Scale bars: D, E, K = 20 μm, F, H, M = 100 μm, G = 5 μm, J, P, Q = 30 μm, N = 10 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia miscanthi on Plantago asiatica (A–H) and Miscanthus sacchariflorus (I–Q). A. Plants producing spermogonia and aecia on the leaf surface. B. Spermogonia on the leaf surface. C. Aecia on lower leaf surface. D. Vertical section of a spermogonium. E. Aeciospores. F. Vertical section of an aecium observed under SEM. G. Aeciospores with verrucose surface observed by SEM. H. Vertical section of an aecium surrounded by peridia. I. Plants producing uredinia on the leaf surface in the field. J. Vertical section of an uredinium with paraphyses. K. Urediniospores. L. Uredinia on the leaf surface. M. Uredinium on the leaf surface observed under SEM. N. Urediniospore with echinulate surface observed under SEM. O. Telia on the leaf surface. P. Vertical section of a telium. Q. Teliospores. Scale bars: D, E, K = 20 μm, F, H, M = 100 μm, G = 5 μm, J, P, Q = 30 μm, N = 10 μm.
FIGURE. Puccinia rangiferina on Rhamuns koraiensis (A–D, F–H) and Deyeuxia pyramidalis (E, I–K). A. Spermogonia and aecia on the leaf surface. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Vertical section of an aecium surrounded with peridia. E, I. Telia on the leaf surface. F. Aeciospores. G. Aeciospore with verrucose surface observed under SEM. H. Aecium observed under SEM. J. Teliospores. K. Vertical section of a telium. Scale bars: C, D, K = 40 μm, F = 20 μm, G, J = 10 μm, H = 50 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia rangiferina on Rhamuns koraiensis (A–D, F–H) and Deyeuxia pyramidalis (E, I–K). A. Spermogonia and aecia on the leaf surface. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Vertical section of an aecium surrounded with peridia. E, I. Telia on the leaf surface. F. Aeciospores. G. Aeciospore with verrucose surface observed under SEM. H. Aecium observed under SEM. J. Teliospores. K. Vertical section of a telium. Scale bars: C, D, K = 40 μm, F = 20 μm, G, J = 10 μm, H = 50 μm.
FIGURE 10 in Kalanchoe ×trageri, at last a name for K. blossfeldiana × K. pumila (Crassulaceae subfam. Kalanchooideae), a horticulturally successful nothospecies
FIGURE 10. John Noyes (John) Trager (1957–) after whom Kalanchoe ×trageri is named. Photograph: Daphne Trager.
FIGURE. Dothiorella viticola on dead branch of Morus sp. (MFLU 19-0621). a, b. Conidiomata on host substrate. c. Vertical section through conidioma. d. Ostiole. e. Peridium of conidioma. f–j. Conidia attached to conidiogenous cells. k–m. Conidia. n. Germinating conidium. o, p. Colony on PDA (o upper, p lower). Scale bars: a = 1 mm, b = 100 μm, c = 50 μm, d = 20 μm, e–n = 10 μm. in Two new species of Botryosphaeriaceae (Botryosphaeriales) and new host/ geographical records
FIGURE. Dothiorella viticola on dead branch of Morus sp. (MFLU 19-0621). a, b. Conidiomata on host substrate. c. Vertical section through conidioma. d. Ostiole. e. Peridium of conidioma. f–j. Conidia attached to conidiogenous cells. k–m. Conidia. n. Germinating conidium. o, p. Colony on PDA (o upper, p lower). Scale bars: a = 1 mm, b = 100 μm, c = 50 μm, d = 20 μm, e–n = 10 μm.
FIGURE. Sphaeropsis linhaiensis on dead branch of Cinnamomum camphora (HKAS 10-2383). a, b. Appearance of ascostromata on host surface. c, d. Section through ascomata. e. Section through peridium. f. Pseudoparaphyses. g–j. Asci. k–p. Ascospores. Scale bars: a = 1 mm, b = 200 μm, c, d = 100 μm, e, f = 20 μm, g–j = 50 μm, k–p = 10 μm. in Two new species of Botryosphaeriaceae (Botryosphaeriales) and new host/ geographical records
FIGURE. Sphaeropsis linhaiensis on dead branch of Cinnamomum camphora (HKAS 10-2383). a, b. Appearance of ascostromata on host surface. c, d. Section through ascomata. e. Section through peridium. f. Pseudoparaphyses. g–j. Asci. k–p. Ascospores. Scale bars: a = 1 mm, b = 200 μm, c, d = 100 μm, e, f = 20 μm, g–j = 50 μm, k–p = 10 μm.
Supplementary material 10 from: Brannoch SK, Wieland F, Rivera J, Klass K-D, Béthoux O, Svenson GJ (2017) Manual of praying mantis morphology, nomenclature, and practices (Insecta, Mantodea). ZooKeys 696: 1-100. https://doi.org/10.3897/zookeys.696.12542
Extended abdominal glossary : Explanation note: Extended glossary of Mantodea abdominal terminology.
Supplementary material 10 from: Van Cann J, Virgilio M, Jordaens K, De Meyer M (2015) Wing morphometrics as a possible tool for the diagnosis of the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 489-506. https://doi.org/10.3897/zookeys.540.9724
Constrained ordination of wing landmarks: Explanation note: Discriminant analysis of principal coordinates (DAPC) maximising morphometric differences in wing landmarks between males and females (a) Ceratitis anonae, Ceratitis fasciventris and Ceratitis rosa and (b) genotypic clusters A, F1, F2, R1, R2.
Supplementary material 7 from: Tedersoo L, Anslan S, Bahram M, Põlme S, Riit T, Liiv I, Kõljalg U, Kisand V, Nilsson RH, Hildebrand F, Bork P, Abarenkov K (2015) Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys 10: 1-43. https://doi.org/10.3897/mycokeys.10.4852
Table S7. Taxonomic classification of the rDNA of fungal.: Explanation note: Taxonomic classification of the rDNA of fungal shotgun metagenome.
Supplementary material 3 from: Tedersoo L, Anslan S, Bahram M, Põlme S, Riit T, Liiv I, Kõljalg U, Kisand V, Nilsson RH, Hildebrand F, Bork P, Abarenkov K (2015) Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys 10: 1-43. https://doi.org/10.3897/mycokeys.10.4852
Table S3. Data set of the SSU V4 and V5 barcodes.: Explanation note: Data set of the SSU V4 and V5 barcodes.
Supplementary material 1 from: Tedersoo L, Anslan S, Bahram M, Põlme S, Riit T, Liiv I, Kõljalg U, Kisand V, Nilsson RH, Hildebrand F, Bork P, Abarenkov K (2015) Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys 10: 1-43. https://doi.org/10.3897/mycokeys.10.4852
Table S1. Characteristics of soil samples.: Explanation note: Characteristics of soil samples used in this study.
Supplementary material 6 from: Tedersoo L, Anslan S, Bahram M, Põlme S, Riit T, Liiv I, Kõljalg U, Kisand V, Nilsson RH, Hildebrand F, Bork P, Abarenkov K (2015) Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys 10: 1-43. https://doi.org/10.3897/mycokeys.10.4852
Table S6. Data set of the LSU D1, D2, and D3 barcodes.: Explanation note: Data set of the LSU D1, D2, and D3 barcodes.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.