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155 results for “28S”
FIGURE 2 in The first phylogenetic study of sword-tail crickets from China inferred from COI, 18S and 28S genes, with the establishment of two new genera and description of one new species (Orthoptera: Grylloidea: Trigonidiidae)
FIGURE 2. Emerasoma curvicerca sp. nov. A. male in dorsal view, B. female in dorsal view, C. male head in dorsal view, D. female head in dorsal view, E. palpus, F. tympana (1. outside, 2. inner side), G. cercus, H. ovipositor, I. male genitalia in dorsal view, J. male genitalia in ventral view.
FIGURE 1 in The first phylogenetic study of sword-tail crickets from China inferred from COI, 18S and 28S genes, with the establishment of two new genera and description of one new species (Orthoptera: Grylloidea: Trigonidiidae)
FIGURE 1. Phylogenetic tree of Trigonidiidae species distributed in China. The topology of the tree was constructed inferred from 18S-28S-COI concatenated sequences using ML method. Two Nemobiinae species comprises Po. taprobanensis and Di. fascipes are regarded as the outgroup. Bootstrap values and posterior probabilities are indicated above each branch. The representative species of each lineage is shown in right in this order top to down: Ho. nigripes, An. brevisparamerus, Na. matsuurai, Em. curvicerca, Me. minor, Se. fujianensis, Sv. bifasciata, Am. fulvus, Pa. nitidum, Tr. cicindeloides, Ab. Chloropodum (photos by He Z.-Q.)
FIGURE 1. 28S C in New carnivorous sponges and allied species from the Great Australian Bight
FIGURE 1. 28S C-region maximum-likelihood phylogram. Numbers on branches are bootstrap probabilities> 50. Numbers following taxon names are QM collection numbers or Genbank accession numbers in case of previously published taxa. The scale bar depicts substitutions per site. The icons indicate gross morphological types. The chelae on the right column indicate the major chelae types for the generic groupings. The coloured bars indicate those genera previously included within Cladorhiza, separated by morphological differences and oceans.
FIGURE 2. Maximum likelihood tree using 28S D2 & D3–5, ITS2 in Read between the lineata: A revision of the tattooed wasps, Zagrammosoma Ashmead (Hymenoptera: Eulophidae), with descriptions of eleven new species
FIGURE 2. Maximum likelihood tree using 28S D2 & D3–5, ITS2, and COI NJ. Bootstrap values shown. The varying colors within Zagrammosoma indicate different species.
FIGURE 8. Single most parsimonious tree for 28SD2 in A new species of Gonatocerus (Hymenoptera: Mymaridae) parasitic on proconiine sharpshooters (Hemiptera: Cicadellidae) in the New World
FIGURE 8. Single most parsimonious tree for 28SD2 (length 396, c.i. 0.75, r.i. 0.77). Bootstrap values indicated above or beside branches.
FIGURE 9. Single most parsimonious tree for 28SD2, ITS1, ITS2 in A new species of Gonatocerus (Hymenoptera: Mymaridae) parasitic on proconiine sharpshooters (Hemiptera: Cicadellidae) in the New World
FIGURE 9. Single most parsimonious tree for 28SD2, ITS1, ITS2, COI and COII (length 885, c.i. 0.76, r.i. 0.83); outgroups pruned from tree. Bootstrap values indicated above branches. Table presents unambiguous base substitutions (minimum number) for branches numbered on tree in boldface.
FIGURE 14. Unrooted Neighbour-joining phylogram the 28S in A new species of Cymodoce Leach, 1814 (Crustacea: Isopoda: Sphaeromatidae) based on morphological and molecular data, with a key to the Northern Indian Ocean species
FIGURE 14. Unrooted Neighbour-joining phylogram the 28S rDNA: D8 expansion fragment of Cymodoce delavrii, C. tribullis and C. waegelei based on p-distances.
FIGURE 5. 28S gene tree for 33 in Revision of the genus Devadatta Kirby, 1890 in Borneo based on molecular and morphological methods, with descriptions of four new species (Odonata: Zygoptera: Devadattidae)
FIGURE 5. 28S gene tree for 33 specimens of Devadatta and one outgroup taxon, from Bayesian Inference analysis. Posterior probability values are shown (as percentages) if less than 100%. RMNH collection codes are shown for each specimen, with the RMNH.INS. prefix omitted for clarity.
Figure 1. Concatenated 28S, 18S in Phylogenetic assessment and systematic revision of the acoel family Isodiametridae
Figure 1. Concatenated 28S, 18S and COI gene tree summary. Percent bootstrap values are given at each node. Sequences from six species of Isodiametridae and Actinoposthiidae represented only by 18S sequences downloaded from GenBank (Table S1) were excluded.
Figure 3. COI–28S concatenated maximum-likelihood tree reconstructed using GARLI 2.0 in Unmasking Aurelia species in the Mediterranean Sea: an integrative morphometric and molecular approach
Figure 3. COI–28S concatenated maximum-likelihood tree reconstructed using GARLI 2.0. Numbers adjacent to nodes show the bootstrap support values. The scale indicates the number of substitutions per site. Reference sequences from GenBank are in bold.
◂Fig. 2 Maximum likelihood trees. A Tree obtained when analysing 18S data set. B Tree obtained when analysing 28S data set. C Tree obtained when analysing COI data set. D Tree obtained when analysing 16S data set. Bootstrap support values below nodes. Syllis and Typosyllis species as they were originally described in Ramisyllis kingghidorahi n. sp., a new branching annelid from Japan
◂Fig. 2 Maximum likelihood trees. A Tree obtained when analysing 18S data set. B Tree obtained when analysing 28S data set. C Tree obtained when analysing COI data set. D Tree obtained when analysing 16S data set. Bootstrap support values below nodes. Syllis and Typosyllis species as they were originally described
FIGURE 5. 28S in Morphological and molecular characteristics of Geocenamus longus and the first report of G. brevidens from a karst cave (Nematoda: Merliniidae Siddiqi, 1971)
FIGURE 5. 28S rDNA-based Bayesian phylogeny of Merliniidae. The new Geocenamus sequences are indicated in bold. Numbers near nodes indicate posterior probabilities.
FIG. 9. Bayesian tree inferred using D2-D3 28S in Analyses of morphological and molecular characteristics of Telotylenchinae from Iran point at the validity of the genera Bitylenchus and Sauertylenchus
FIG. 9. Bayesian tree inferred using D2-D3 28S rDNA sequences. Posterior probabilities (pp) exceeding 0.65 are given on appropriate clades, bifurcations with pp above 0.95 are considered to be well-supported. Nematode species and GenBank numbers are listed for each taxon. In bold: newly generated D2-D3 28S rDNA sequences. With regard to Telotylenchinae Clades (indicated in Roman figures) we adhered to Handoo et al. (2014)
FIGURE 1. Maximum likelihood phylogram inferred from 53 taxa from ITS and 28S in Expanding the diversity of mucoralean fungi from northern Thailand: novel Backusella species from soil
FIGURE 1. Maximum likelihood phylogram inferred from 53 taxa from ITS and 28S genetic markers. Bootstrap support (BS) from RAxML and IQ-tree, and the posterior probability from Bayesian analysis are provided near the nodes as BS/BS (IQ-tree)/ PP. Values <70% for bootstrap support and <0.80 for posterior probability are indicated by a minus sign (–). Unrecovered branching is indicated by (*) sign. The novel strain proposed in the current study is shown in bold. T, ET, LT, and NT indicate ex-type, ex-epitype, ex-lectotype and ex-neotype strains, respectively. Mucor indicus (CBS 226.29) and M. koreanus (EML-QT1) were used as outgroup taxa.
FIGURE 4. Maximum likelihood bootstrap tree for selected cyclostome braconids, using 28S D2-D3 in An enigmatic new genus of Hormiinae (Hymenoptera: Braconidae) from South India
FIGURE 4. Maximum likelihood bootstrap tree for selected cyclostome braconids, using 28S D2-D3 sequence data. Numbers above branches are bootstrap percentages for clades with>50% support. Note that Indohormius gen. nov. is recovered in a clade comprising non-rhyssaline and non-mesostoine taxa with a bootstrap support value of 98%, but its finer level relationships are not significantly supported.
Supplementary material 2 from: de Chambrier A, Waeschenbach A, Fisseha M, Scholz T and Mariaux J (2015) A large 28S rDNA-based phylogeny confirms the limitations of established morphological characters for classification of proteocephalidean tapeworms (Platyhelminthes, Cestoda). ZooKeys 500: 25-59. https://doi.org/10.3897/zookeys.500.9360
Table 1: Explanation note: Leaf stability test results from the post-burnin posterior tree distribution from two MrBayes runs that included the full complement of taxa. Taxa are ranked based on their positional stability estimated from the Maximum, which is an average of all the highest percentages from all possible quartet sets for a particular taxon, Difference, which is the difference between the highest and the second highest percentages from all possible quartet sets for a particular taxon, and Entropy, which is calculated as the normalized sum of logs for each quartet percentages (except the unresolved polygamy).
Supplementary material 1 from: de Chambrier A, Waeschenbach A, Fisseha M, Scholz T and Mariaux J (2015) A large 28S rDNA-based phylogeny confirms the limitations of established morphological characters for classification of proteocephalidean tapeworms (Platyhelminthes, Cestoda). ZooKeys 500: 25-59. https://doi.org/10.3897/zookeys.500.9360
Figure 1: Explanation note: Bayesian inference of partial (domains 1–3) 28S rDNA sequences of the complete taxon set of proteocephalideans performed using MrBayes version 3.1 using the GTR + I + G model of sequence evolution. Two parallel runs were performed for 10,000,000 generations; 8,000,000 generations were discarded as burnin. Branches with posterior probability (pp) support below 95% are collapsed; pp are indicated below branches.
FIGURE 7. Comparison concatenated tree ITS2 – 28S rDNA D2 in Description of two new species closely related to Doryctobracon areolatus (Szépligeti, 1911) (Hymenoptera, Braconidae), based on morphometric and molecular analyses
FIGURE 7. Comparison concatenated tree ITS2 – 28S rDNA D2 (UPGMA) produced from the nucleotide sequences (A), cluster analysis of the Mahalanobis distance (UPGMA) calculated from the shape of the wings components (B). (DAAP = Doryctobracon areolatus from Amapá, DAGO = D. areolatus from Goiás, DATO = D. areolatus from Tocantins, DASP = D. areolatus from São Paulo, YSAP = Doryctobracon whartoni sp. nov. (yellow stigma) from Amapá; BSAP = Doryctobracon adaimei sp. nov. (brown stigma) from Amapá, BSGO = D. adaimei sp. nov. from Goiás, BSTO = D. adaimei sp. nov. from Tocantins.
FIGURE 4. Bayesian tree inFerred From 28S in Ditylenchus sarvarae sp. n. (Tylenchina: Anguinidae) from Iran
FIGURE 4. Bayesian tree inFerred From 28S rDNA seqUences in Ditylenchus and newly seqUenced From Iran (Bold).
FIGURE 7. Pericelis genus-level partial 28S in Description of the snail-eating flatworm in marine aquaria, Pericelis tectivorum sp. nov. (Polycladida, Platyhelminthes)
FIGURE 7. Pericelis genus-level partial 28S rDNA phylogeny using Bayesian inference, rooted with Theama sp. Accession numbers shown after species names.
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