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122
datasets available to search
ShareScore release 0.9.0
Dataset results
122 results for “3d genome organization”
Deterioration of multi-level 3D genome organization during breast cancer progression [third-party re-analysis]
GEO Series GSE247171. Homo sapiens. 0 samples. Type: Third-party reanalysis; Genome binding/occupancy profiling by high throughput sequencing.
The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle [PChi-C]
GEO Series GSE155153. Mus musculus. 16 samples. Type: Other.
Nuclear speckles as a key regulator for the 3D genome organization [RNA-Seq]
GEO Series GSE130805. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
CTCF chromatin residence time controls 3D genome organization, gene expression and DNA methylation in pluripotent cells [Hi-C]
GEO Series GSE153948. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome organization, transcription and aberrant DNA replication contribute to genome instability at fragile sites
GEO Series GSE150354. Homo sapiens. 4 samples. Type: Other.
Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice
GEO Series GSE143724. Oryza sativa. 154 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
3D genome organization, transcription and aberrant DNA replication contribute to genome instability at fragile sites
GEO Series GSE150543. Homo sapiens. 16 samples. Type: Other.
Concurrent profiling of multiscale 3D genome organization and gene expression in single mammalian cells
GEO Series GSE238001. Mus musculus; Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing; Other.
Regulation of 3D genome organization, transcription and histone H3K9me2 by histone H3K9 methyltransferases
GEO Series GSE169106. Mus musculus. 56 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Regulation of 3D genome organization, transcription and histone H3K9me2 by histone H3K9 methyltransferases [RNA-Seq]
GEO Series GSE169098. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
SETDB1 Fuels the Lung Cancer Phenotype by Modulating Epigenome, 3D Genome Organization, and Chromatin Mechanical Properties
GEO Series GSE168233. Homo sapiens. 40 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Viral oncogene manipulates YY1 to alter host 3D genome organization and promote B cell proliferation
GEO Series GSE277748. Homo sapiens. 26 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Nuclear speckles as a key regulator for the 3D genome organization
GEO Series GSE131466. Mus musculus. 13 samples. Type: Expression profiling by high throughput sequencing; Other.
Homotypic clustering of L1 and B1 repeats organizes 3D genome
GEO Series GSE123806. Mus musculus. 8 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
Systematic analysis of circadian gene expression mediated by epigenetic modification and 3D genome organization in Rice [Hi-C]
GEO Series GSE213090. Oryza sativa Indica Group. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcription-dependent domain-scale 3D genome organization in dinoflagellates
GEO Series GSE153950. Breviolum minutum. 35 samples. Type: Other.
3D genome organization in the epithelial-mesenchymal transition spectrum [scHi-C_OVCA429shGRHL]
GEO Series GSE201918. Homo sapiens. 9 samples. Type: Other.
3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [T8_CUT&Tag]
GEO Series GSE228950. Mus musculus. 44 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The 3D genomics of lampbrush chromosomes highlights the role of active transcription in chromatin organization
GEO Series GSE288415. Gallus gallus. 40 samples. Type: Other; Expression profiling by high throughput sequencing.
Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [ChIP-Seq]
GEO Series GSE143719. Oryza sativa. 98 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.