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Codebook - Knowledge-Action Platforms (Data & Policy article) Bream McIntosh et al.,
<p>Codebook used for Round 2 coding against key criteria of a 'Platform' definition that responds to matrix coding of Sustainability Knowledge Action Platforms. To accompany the article in Data & Policy 'The role of sustainability knowledge-action platforms in advancing multi-stakeholder engagement on sustainability'.</p>
Mechanism and site of action of big dynorphin on ASIC1a
<p>Contains a read_me file and data related to the publication: Mechanism and site of action of big dynorphin on ASIC1a</p>
Vehicle driving actions for loudness and annoyance perception
<p>This dataset contains 360º videos of 36 driving actions. The videos are organized by vehicles: a white car (Opel Corsa 2016), a dark red motorbike (Suzuki VX 800 800cc 1994), a dark blue van (Fort Transit FT100 1999) and a street sweeper (Kärcher MC 50).</p> <p>The recordings were done with a 360º camera (Xiami Mi Sphere Camera) and a tethraedral microphone (Core Sound TetraMic). The microphone recordings were synthesized to stereo recordings (as if the microphones were pointing at +-60º azimuth) with VVMic from VVAudio. The sound pressure level was measured with a level meter.</p> <p>The driving actions are the following. The sound pressure level was calculated as the fast maximum level (maximum dB SPL in windows of 125ms).</p> <ul> <li>Car <ol> <li><a href="https://www.youtube.com/watch?v=zvmhiE3NXx8&t=0s">00:00</a> Scene 1 - Stand by (close) - 72.5 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=zvmhiE3NXx8&t=18s">00:18</a> Scene 2 - Accelerate (close) LR - 84.9 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=zvmhiE3NXx8&t=36s">00:36</a> Scene 3 - 30 km/h (far) RL - 70.4 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=zvmhiE3NXx8&t=54s">00:54</a> Scene 4 - 50 km/h (close) LR - 81.0 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=zvmhiE3NXx8&t=72s">01:12</a> Scene 5 - Break and stop (far) RL - 79.8 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=zvmhiE3NXx8&t=90s">01:30</a> Scene 6 - Stand by (far) - 67.8 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=zvmhiE3NXx8&t=108s">01:48</a> Scene 7 - Accelerate (far) RL - 79.3 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=zvmhiE3NXx8&t=126s">02:06</a> Scene 8 - 30 km/h (close) LR - 82.4 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=zvmhiE3NXx8&t=144s">02:24</a> Scene 9 - 50 km/h (far) RL - 75.7 dB SP</li> <li><a href="https://www.youtube.com/watch?v=zvmhiE3NXx8&t=162s">02:42</a> Scene 10 - Break and stop (close) LR - 75.9 dB SPL</li> </ol> </li> <li>Motorbike <ol> <li><a href="https://www.youtube.com/watch?v=3wa6zeEbJ5w&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=2&t=0s">00:00</a> Scene 1 - Stand by (close) - 83.7 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=3wa6zeEbJ5w&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=2&t=18s">00:18</a> Scene 2 - Accelerate (close) LR - 92.5 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=3wa6zeEbJ5w&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=2&t=36s">00:36</a> Scene 3 - 30 km/h (far) RL - 83.2 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=3wa6zeEbJ5w&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=2&t=54s">00:54</a> Scene 4 - 50 km/h (close) LR - 90.2 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=3wa6zeEbJ5w&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=2&t=72s">01:12</a> Scene 5 - Break and stop (far) RL - 81.8 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=3wa6zeEbJ5w&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=2&t=90s">01:30</a> Scene 6 - Stand by (far) - 78.1 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=3wa6zeEbJ5w&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=2&t=108s">01:48</a> Scene 7 - Accelerate (far) RL - 86.8 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=3wa6zeEbJ5w&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=2&t=126s">02:06</a> Scene 8 - 30 km/h (close) LR - 91.2 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=3wa6zeEbJ5w&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=2&t=144s">02:24</a> Scene 9 - 50 km/h (far) RL - 84.3 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=3wa6zeEbJ5w&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=2&t=162s">02:42</a> Scene 10 - Break and stop (close) LR - 83.4 dB SPL</li> </ol> </li> <li>Van <ol> <li><a href="https://www.youtube.com/watch?v=DdaWvKfVILo&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=3&t=0s">00:00</a> Scene 1 - Stand by (close) - 84.4 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=DdaWvKfVILo&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=3&t=18s">00:18</a> Scene 2 - Accelerate (close) LR - 93.8 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=DdaWvKfVILo&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=3&t=36s">00:36</a> Scene 3 - 30 km/h (far) RL - 81.4 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=DdaWvKfVILo&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=3&t=54s">00:54</a> Scene 4 - 50 km/h (close) LR - 92.3 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=DdaWvKfVILo&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=3&t=72s">01:12</a> Scene 5 - Break and stop (far) RL - 81.4 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=DdaWvKfVILo&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=3&t=90s">01:30</a> Scene 6 - Stand by (far) - 79.8 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=DdaWvKfVILo&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=3&t=108s">01:48</a> Scene 7 - Accelerate (far) RL - 85.0 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=DdaWvKfVILo&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=3&t=126s">02:06</a> Scene 8 - 30 km/h (close) LR - 85.9 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=DdaWvKfVILo&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=3&t=144s">02:24</a> Scene 9 - 50 km/h (far) RL - 85.6 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=DdaWvKfVILo&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=3&t=162s">02:42</a> Scene 10 - Break and stop (close) LR - 83.1 dB SPL</li> </ol> </li> <li>Street sweeper <ol> <li><a href="https://www.youtube.com/watch?v=4ssqZk78JYc&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=4&t=0s">00:00</a> Scene 1 - Stand by (close) - max 81.9 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=4ssqZk78JYc&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=4&t=18s">00:18</a> Scene 2 - Sweeper on (close) - max 93.7 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=4ssqZk78JYc&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=4&t=36s">00:36</a> Scene 3 - Move forward (close) LR - max 94.6 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=4ssqZk78JYc&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=4&t=54s">00:54</a> Scene 4 - Stand by (far) - max 79.6 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=4ssqZk78JYc&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=4&t=72s">01:12</a> Scene 5 - Sweeper on (far) - max 84.4 dB SPL</li> <li><a href="https://www.youtube.com/watch?v=4ssqZk78JYc&list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB&index=4&t=90s">01:30</a> Scene 6 - Move forward (far) RL - max 84.3dB SPL</li> </ol> </li> </ul> <p> </p> <p>You can also find the videos in <a href="https://www.youtube.com/playlist?list=PLgon04MLXpQpN53hYwTZRmDp0ZSsmnHXB">Youtube</a>.</p> <p>Reference:</p> <p>Llorach, Gerard, Matthias Vormann, Volker Hohmann, Dirk Oetting, Christina Fitschen, Markus Meis, Melanie Krüger, and Michael Schulte. "Vehicle noise: Loudness ratings, loudness models and future experiments with audiovisual immersive simulations." In <em>INTER-NOISE and NOISE-CON Congress and Conference Proceedings</em>, vol. 259, no. 3, pp. 6752-6759. Institute of Noise Control Engineering, 2019.</p>
Data from Churan et al. Action-dependent processing of self-motion in parietal cortex of macaque monkeys
<p><strong>Animals</strong></p> <p>Two adult male monkeys (macaca mulatta) participated in the study. Single-unit recordings were done using standard tungsten microelectrodes (FHC, Bowdoin, USA) with an impedance of ~2 MΩ at 1 kHz that were positioned by an hydraulic micromanipulator (MO-95, Narishige, Tokyo, Japan). A stainless-steel guiding tube was used for transdural penetration and support of the electrode. The neuronal signal was processed using a commercial system (Alpha Omega, Nof HaGalil, Israel). It was band-pass filtered (cut-off frequencies at 500 Hz and 8000 Hz) and sampled at 44 kHz.</p> <p><strong>Apparatus</strong></p> <p>During recordings, the monkeys were sitting head-fixed in a primate chair in a dark room, and their eye-position was monitored at 1000 Hz using a video-based eye tracker (EyeLink 1000, SR Research, Ottawa, Canada). The chair was positioned at a distance of 97 cm from a semi-transparent screen (size 160 cm x 90 cm, subtending the central 79 deg x 50 deg of the visual field) on which the visual stimuli were back-projected using a PROPixx-projector (VPixx Technologies, St-Bruno de Montarville, Canada) running at a resolution of 1920 x 1080 pixels and at a frame rate of 100 Hz. A custom-made touch sensor (length 10 cm, diameter 1 cm) was integrated into the monkey chair in front of the monkey and its status was monitored online at a sampling rate of 1 kHz.</p> <p><strong>Data processing</strong></p> <p>Single units were isolated using a semi-manual spike sorter (Plexon Inc, Dallas, Texas). To this end we used a threshold on the electrode signal that was set manually to separate the action potentials from noise. The samples that exceeded the threshold were further analyzed using principal components as well as other features that were derived from the signal (like local maxima and minima). Then clusters of samples with similar properties were identified visually and each defined as representing a single unit. For a detailed description of the sorting process see the offline User Guide (Plexon, 2020).</p> <p>Further description of the Methods, see: Churan et al. 2021, doi: 10.1152/jn.00049.2021</p> <p><strong>Data:</strong></p> <p>The file '<strong>data_active_passive.mat</strong>' contains following variables:</p> <p>monkey: code for the tested monkey (1=monkey S, 2=monkey O)</p> <p>baseline: Mean and standard deviation of the activity in a time window of 150 ms to 20 ms before the press of the button.</p> <p>reaction: Mean time between the switch of the color of the fixation point from red to green and the time of the button press.</p> <p>anti_p: Significance of a one sided t-test between the baseline activity and activity 200 ms to 0 ms prior to the onset of stimulus motion.</p> <p>p_win (a (1-3),b (1-3),c (1-3),n(1-110)): 4D matrix containing p-values of t-tests</p> <p>a:</p> <p>1: Was preparatory activity significantly higher in the passive relative to the active condition?</p> <p>2: Was preparatory activity significantly lower in the passive relative to the active condition?</p> <p>3: Was the tonic motion response (200 ms to 500 ms after motion onset) significantly different between the active and the passive conditions?</p> <p>b:</p> <p>1: Calculation was made based on all motion directions</p> <p>2: Calculation was made based on the preferred motion direction</p> <p>3: Calculation was made based on the flanking motion directions</p> <p>c:</p> <p>1: Calculation was made based on all presented delays</p> <p>2: Calculation was made based on the shorter set of delays (500 ms to 700 ms)</p> <p>3: Calculation was made based on the longer set of delays (701 ms to 1000 ms)</p> <p>n: number of the investigated neuron</p> <p>psth_alldir: cell array containing the PSTHs (obtained by convolving each spike with a Gaussian as described in the manuscript) in a time window between 1000 ms before and 800 ms after the onset of motion (in 1 ms steps). PSTHs were calculated based on data from all tested directions. Each cell array consists of 4 elements containing different conditions:</p> <p>1: active condition</p> <p>2: passive condition shorter set of delays (500 ms to 700 ms)</p> <p>3: passive condition longer set of delays (701 ms to 1000 ms)</p> <p>4: passive condition all delays</p> <p>psth_bestdir: same as above - using only the preferred direction</p> <p>psth_nbestdir: same as above - using only the flanking directions</p> <p>d_alldir: cell array containing the continuous d-prime (as described in the manuscript) in a time window between 1000 ms before and 800 ms after the onset of motion (in 1 ms steps). d' were calculated based on data from all tested directions. Each cell array consists of 4 elements containing different conditions:</p> <p>1: active condition</p> <p>2: passive condition shorter set of delays (500 ms to 700 ms)</p> <p>3: passive condition longer set of delays (701 ms to 1000 ms)</p> <p>4: passive condition all delays</p> <p>d_bestdir: same as above - using only the preferred direction</p> <p>d_nbestdir: same as above - using only the flanking directions</p> <p>The file '<strong>timecourse_preparatory.mat</strong>' contains the cell array 'd_alldir_preparatory' that consists of 201 elements. Each of the elements contains PSTHs of 23 neurons that have exhibited significant preparatory activity in the passive condition in a time window 1000 ms to 0 ms before the motion onset. Each of the 201 elements describes a specific range of delays between button press and motion onset. This delay range is always a 100 ms wide sliding window, e.g. the element 1 represents delays between 500 and 600 ms, in element 2, the delays are between 501 and 601 ms and so on with the last element (201) representing delays between 700 and 800 ms.</p> <p>Some example code that re-creates most of the figures from the manuscript and that may serve as a starting point for further exploration of the data is available on request from the corresponding author.</p>
Drug Mechanism of Action Target Database
<p>First release contains data from March 2016 release of DrugCentral database.</p>
Image database to supplement "Paulus, F.M. et al. Pain empathy but not surprise in response to unexpected action explains arousal related pupil dilation." (VIPER database)
<p>This folder contains the 282 images of the "VIPER" database (visually-induced pain empathy repository) along with ratings of 24 independent raters. Details are described in the following publication:</p> <p>Paulus, F.M., Müller-Pinzler, L., Walper, D., Marx, S., Hamschmidt, L., Rademacher, L., Krach, S., Einhäuser, W. Pain empathy but not surprise in response to unexpected action explains arousal related pupil dilation.</p> <p>The material can be used for scientific purposes, provided this reference is appropriately cited. Please check the download site to get the up-to-date reference at the time of your publication.</p> <p> </p> <p>Conditions are identified by the filename of the image, which consists of the number of the scenario (1-83) and the condition identifier:<br> pain<br> neut(ral)<br> mism(atch)<br> tool<br> Note that the tool and the mismatch condition do not exist for all scenarios.</p> <p>The file ratings_viper.csv contains the ratings. Each image corresponds to a line, the columns are as follows:<br> Column 1: Filename of the image<br> Column 2: Scenario number<br> Column 3: condition<br> Columns 4 through 27: ratings of the 24 individuals (between 0 and 4, NaN if there was no rating recorded)</p> <p>The file thumbnail_viper.jpg provides an overview over all images in the database.</p> <p>For ease of download, the images are available as tar-archive (allImages_viper.tar) and as inidivual files.</p> <p> </p>
Actionable Information During a Disaster (Self-organize Relief Efforts via #PorteOuverte)
<p><strong>Abstract</strong> (our paper)</p> <p>Web-based social and communication technologies enable citizens to self-organize relief efforts in response to crises. This work focuses on a question fundamental to the concept of collective intelligence: how effective are such self-organized channels, ungoverned by any central authority, in conforming to their intended function? In this study we examine the hashtag #PorteOuverte ("#OpenDoor") introduced during the 2015 Paris terrorist attacks, as an "improvised logistical channel" (ILC) to help individuals to find a safe shelter near the attack sites. We analyze the dynamics and effectiveness of #PorteOuverte by comparing its proportion of relevant logistical messages -- individuals requesting or offering shelter -- to other messages such as those offering emotional consolation or commenting on the hashtag itself. Our results reveal that the vast majority of messages are not relevant, however the crowd senses and spreads relevant messages more than others. We further demonstrate that relevant messages can be automatically detected and thus algorithmic promotion may be possible.</p> <p><strong>Data</strong></p> <p>The #PorteOuverte hashtag ("opendoor" in English), created right after the 2015 terrorist attacks in Paris, was used by individuals to offer shelter to strangers stranded by the attacks and by individuals in need of shelter to request help and post their whereabouts. The file #PorteOuverte _tweet_ids.txt contains all the original tweet ids that used this hashtag.</p> <p>The first tweet was posted on Friday, 13 Nov 2015 21:34:06 GMT.</p> <p>Duration: 2015-11-13 to 2015-11-16 (retweets not included).</p> <p>Total number of tweets: 75547</p> <p><strong>Publication</strong></p> <p>This data set was created for our study. If you make use of this data set, please cite:</p> <p>He, X., Lu, D., Margolin, D., Wang, M., Idrissi, S., Lin, Y.-R. (2017). "The Signals and Noise: Actionable Information in Improvised Social Media Channels During a Disaster," Proceedings of Web Science 2017 (WebSci 2017), 2017. doi:10.1145/3091478.3091501</p>
Appendices to the Roadmap for action for the project More Welfare: towards new risk assessment methodologies and harmonised animal welfare data in the EU
Open the record for dataset details and reuse information.
Forecasting Adversarial Actions Using Judgment Decomposition-Recomposition
<p>This repository contains the data and source code used in the research paper, "Forecasting Adversarial Actions Using Judgment Decomposition-Recomposition".</p>
Characterization and morphometry of prone and affected watersheds by hydro-geomorphological processes in the Serra do Mar Mountain Range, southeastern Brazil: foundation for planning and mitigation actions.
<p>Data: shapefile, tables, and kmz files. </p> <ol> <li>SHAPEFILES</li> </ol> <p>- Dataset with watersheds mapped in the Serra do Mar Paulista Region in the follow cities:</p> <ul> <li>Ubatuba (Abbvr. WU)</li> <li>Caraguatatuba (Abbvr. WC)</li> <li>São Sebastião (Abbvr. WSS)</li> <li>Bertioga (Abbvr. WB)</li> <li>Santos (Abbvr. WS)</li> <li>Praia Grande (Abbvr. WPG)</li> <li>Cubatão (Abbvr. WCUB)</li> <li>São Vicente (Abbvr. WSV)</li> <li>Itanhaém (Abbvr. WITA)</li> <li>Peruíbe (Abbvr. WPERU)</li> <li>Iguape (Abbvr. WIGUA)</li> <li>Itariri (Abbvr. WITR)</li> <li>Pedro de Toledo (Abbvr. WPDT)</li> <li>Iporanga (Abbvr. WIPORA)</li> <li>Apiaí (Abbvr. WAPI)</li> <li>Itaoca Abbvr. WITAO)</li> </ul> <p>- Each shapefile contain information about altitude (min., max, and mean), area (km²), and length (km). </p> <p>- Debris-flow Inventory shapefile.</p> <p> 2. TABLES</p> <ul> <li>Tables for the watersheds mapped in each cities also contain information about the morphometric parameters (melton ratio, basin relief, and relief ratio).</li> <li>Debris-flow inventory information. </li> </ul> <p> </p>
HISTOLOGICAL EVALUATION OF THE EFFECTS OF ACTION BITTERS ON THE TESTES OF ADULT MALE WISTAR RATS
<p>Action Bitters, a popular herbal concoction, has been traditionally used to treat various health conditions, including those related to the male reproductive system. Despite its widespread use, there is a dearth of scientific evidence on its effects on the testes. This study aimed to investigate the histological changes in the testes of adult male Wistar rats following administration of Action Bitters.</p> <p><strong>Methods:</strong> Fifteen adult male Wistar rats were randomly divided into three groups (n = 5). Group A served as the normal control, while groups B and C received 10% (0.66ml/kg) and 5% (0.33ml/kg) lethal dose 50 (Ld50) of Action Bitters, respectively. The Ld50 values were calculated based on the median lethal dose of the herbal remedy. The rats were administered the herbal remedy for a period of one month, after which they were sacrificed, and their testes collected for histological examination.</p> <p><strong>Results:</strong> Microscopic examination of the testicular tissue samples revealed no evidence of abnormal cellular changes or tissue damage. The tissue samples appeared normal, with no signs of inflammation, necrosis, or apoptosis.</p> <p><strong>Discussion:</strong> The findings of this study suggest that Action Bitters does not induce histological changes in the testes of adult male Wistar rats. These results provide new insights into the potential mechanism of action of the herbal medication on testicular function. The study highlights the importance of considering both histological and biochemical assessments when evaluating the effects of herbal remedies on reproductive health.</p> <p><strong>Conclusion:</strong> This study contributes to the growing body of knowledge on the effects of herbal remedies on the male reproductive system. The findings suggest that Action Bitters may be a safe and effective herbal remedy for treating reproductive health issues, and further research is warranted to explore its potential benefits and mechanisms of action.</p>
Improving Stability of Tear Film Lipid Layer via Concerted Action of Two Drug Molecules: A Biophysical View
<p>Surface pressure/area isotherms, stress relaxation transients, molecular dynamic simulation parameters of surface films composed of tear lipids and drug molecules.</p>
Light-activated molecular machines display broad spectrum antibacterial action
<p>TEM images of <em>E. coli</em> treated with 1% DMSO or 0.5x MIC of different visible light-activated molecular machines. Light-activated molecular machines (MM) are synthetic molecular structures that, following light activation, undergo successive unidirectional rotation that results in a drilling-like rapid motion that can thrust the motor through biological membranes. Transmission electron microscopy (TEM) images revealed that treatment of <em>E. coli</em> with 0.5x MIC of different MM (DL-654, DL-877, DL-878) followed by activation with 42.6 J cm<sup>-2</sup> of 405 nm light resulted in substantial changes in cell morphology including the detachment of the inner membrane from the cell wall, damage to peptidoglycan, distortion of the cell surface, and formation of outer membrane vesicles, denoting membrane and periplasmic stress, that were not evident in 1% DMSO-treated and irradiated cells. </p>
Dorsal striatum coding for the timely execution of action sequences
<p>The automatic initiation of actions can be highly functional. But occasionally these actions cannot be withheld and are released at inappropriate times, impulsively. Striatal activity has been shown to participate in the timing of action sequence initiation and it has been linked to impulsivity. Using a self-initiated task, we trained adult male rats to withhold a rewarded action sequence until a waiting time interval has elapsed. By analyzing neuronal activity we show that the striatal response preceding the initiation of the learned sequence is strongly modulated by the time subjects wait before eliciting the sequence. Interestingly, the modulation is steeper in adolescent rats, which show a strong prevalence of impulsive responses compared to adults. We hypothesize this anticipatory striatal activity reflects the animals' subjective reward expectation, based on the elapsed waiting time, while the steeper waiting modulation in adolescence reflects age-related differences in temporal discounting, internal urgency states, or explore-exploit balance. </p>
Spatial Scaling Challenge. COST Action CA17134 SENSECO. Working Group 1
<p>This dataset contains the data, documentation, and scripts that compose the <strong>SPATIAL SCALING CHALLENGE</strong> organized in the framework of the <strong>SENSECO COST Action CA17143</strong> “Optical synergies for spatiotemporal SENsing of Scalable ECOphysiological traits” (<a href="https://www.senseco.eu/">https://www.senseco.eu/</a>), by the <strong>Working Group 1</strong><strong>.</strong> “Closing the scaling gap: from leaf measurements to satellite images” (<a href="https://www.senseco.eu/working-groups/wg1-scaling-gap/">https://www.senseco.eu/working-groups/wg1-scaling-gap/</a>).</p> <p>The <strong>SPATIAL SCALING CHALLENGE</strong> is an open exercise where we challenge the remote sensing community to retrieve relevant vegetation biophysical and physiological variables such as leaf chlorophyll content (<em>C</em><sub>ab</sub>), leaf area index (<em>LAI</em>), maximal carboxylation rate (V<sub>c</sub><sub>max,25</sub>), and non-photochemical quenching (<em>NPQ</em>) from simulated (hyperspectral reflectance (<em>HDRF</em>), sun-induced chlorophyll fluorescence (<em>F</em>) and land surface temperature (<em>LST)</em>) imagery.</p> <p>The dataset contains the simulated remote sensing and field data, their description, and scripts in Matlab, Python, and R languages to facilitate importing and handling the data and producing the standardized outputs necessary to participate.</p> <p><strong>IMPORTANT:</strong> <strong>Additional data</strong> that can be used at the discretion of the participants have been released in <strong><a href="https://doi.org/10.5281/zenodo.6530187">https://doi.org/10.5281/zenodo.6530187</a></strong></p> <p>The <strong>SPATIAL SCALING CHALLENGE</strong> aims at gathering the community’s expertise and knowledge to tackle the scaling problems posed by variables of different nature. These experiences will be summarized in a journal article where all the participants are invited to contribute. The exercise is internationally open. Ph.D. students, early career and senior researchers, spin-offs, and companies working in the field of remote sensing of vegetation ecophysiology are welcome to participate.</p> <p><strong>STILL OPEN FOR PARTICIPATION! New deadline 31<sup>st</sup> of October 2022.</strong></p> <p>Follow all the <strong>communications and updates</strong> of the <strong>SPATIAL SCALING CHALLENGE</strong> in the RG site: <strong><a href="https://www.researchgate.net/project/Spatial-Scaling-Challenge-COST-Action-CA17134-SENSECO-Working-Group-1">https://www.researchgate.net/project/Spatial-Scaling-Challenge-COST-Action-CA17134-SENSECO-Working-Group-1</a></strong>.</p> <p> </p>
Code and data for: Manipulating actions: a selective two-option device for cognitive experiments in wild animals
<p>Code and data for recreating survival analyses in 'Manipulating actions: a selective two-option device for cognitive experiments in wild animals'</p>
Spatial Scaling Challenge - Additional Data. COST Action CA17134 SENSECO. Working Group 1
<p>This dataset contains the data additional data provided for the <strong>SPATIAL SCALING CHALLENGE</strong> organized in the framework of the <strong>SENSECO COST Action CA17143</strong> “Optical synergies for spatiotemporal SENsing of Scalable ECOphysiological traits” (<a href="https://www.senseco.eu/">https://www.senseco.eu/</a>), by the <strong>Working Group 1</strong><strong>.</strong> “Closing the scaling gap: from leaf measurements to satellite images” (<a href="https://www.senseco.eu/working-groups/wg1-scaling-gap/">https://www.senseco.eu/working-groups/wg1-scaling-gap/</a>).</p> <p> </p> <p>The main dataset, documentation and scripts of the <strong>SPATIAL SCALING CHALLENGE</strong> must be downloaded from<strong>: <a href="https://doi.org/10.5281/zenodo.6451335">https://doi.org/10.5281/zenodo.6451335</a></strong></p> <p>This additional dataset includes half-hourly time series of down-welling incoming spectral irradiance (W m<sup>-2</sup> µm<sup>-1</sup>) in the visible and near-infrared domains as measured by a field spectroradiometer operating in a nearby ecosystem station. The inclusion of these data in the Spatial Scaling Challenge is at the discretion of the participants. </p> <p> </p> <p>The <strong>SPATIAL SCALING CHALLENGE</strong> aims at gathering the community’s expertise and knowledge to tackle the scaling problems posed by variables of different nature. These experiences will be summarized in a journal article where all the participants are invited to contribute. The exercise is internationally open. Ph.D. students, early career and senior researchers, spin-offs, and companies working in the field of remote sensing of vegetation ecophysiology are welcome to participate.</p> <p> </p> <p><strong>STILL OPEN FOR PARTICIPATION! New deadline 31<sup>st</sup> of October 2022.</strong></p> <p> </p> <p>Follow all the <strong>communications and updates</strong> of the <strong>SPATIAL SCALING CHALLENGE</strong> in the RG site: <strong><a href="https://www.researchgate.net/project/Spatial-Scaling-Challenge-COST-Action-CA17134-SENSECO-Working-Group-1">https://www.researchgate.net/project/Spatial-Scaling-Challenge-COST-Action-CA17134-SENSECO-Working-Group-1</a></strong>.</p> <p> </p> <p> </p>
A comparison of different methods of identifying publications related to the United Nations Sustainable Development Goals: Case Study of SDG 13: Climate Action
<p>This data set pertains to the following research article: Purnell, P.J. (2022) <em>A comparison of different methods of identifying publications related to the United Nations Sustainable Development Goals: Case Study of SDG 13 – Climate Action</em>. arXiv:2201.02006</p>
Microclimate simulation output: "Between vision and action: the predicted effects of co-designed green infrastructure solutions on environmental burdens"
<p>The following microclimate simulation dataset supports the paper "Between vision and action: the predicted effects of co-designed green infrastructure solutions on environmental burdens" by Mathias Schaefer, published in Urban Ecosystems (2022).</p> <p>"T0Simulation_11082020_output" contains data about the status quo simulation of the area of interest (500 m x 500 m x 60 m), whereas "T1Simulation_11082020_output" shows the results of the Green Infrastructure scenario described in the research article above. Please ensure enough memory space on your device, as both files have a size of approximately 25 GB (unzipped).</p> <p>The output files can be visualized with the ENVI-met Leonardo extension. The ENVI-met LITE-version is freely available and can be downloaded at the <a href="https://envi-met.info/doku.php?id=files:download">ENVI-met homepage</a>. Alternatively, the included .NETCDF files can be imported as a multidimensional raster dataset in ArcGIS Pro.</p> <p>Files in the folder "atmosphere" represent meteorological parameters such as potential air temperature [°C], relative humidity [%], or wind speed [m/s]. Air pollution calculations like particulate matter concentrations [µg/m³] can be found in the folder "pollutants". The folder "buildings" contains building data for 3D visualizations of surface temperatures [°C].</p>
IDE Action Log Dataset from a CS1 MOOC
<p>This is a a dataset containing Integrated Development Environment (IDE) logs from an introductory programming MOOC. The dataset contains information on when actions in the IDE were performed in relation to deadlines over the different parts of the course. One exceptional aspect of the dataset is that part of the logs have been gathered at the keystroke level, allowing for fine-grained insight into the learning process. In addition to the IDE logs themselves, the dataset has information on whether students included in the data passed the course. This can facilitate further research that analyzes how time-related behavior relates to performance in introductory programming courses.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.