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815
datasets available to search
ShareScore release 0.9.0
Dataset results
815 results for “CUT&RUN”
Identifying the role of FOXM1 in human primary renal tubular epithelials using bulk RNA-seq and Cut&Run to understand its role in acute kidney injury and repair [RNA-seq]
GEO Series GSE234443. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
SIRT2 is a regulator of the differentiation block driven by SMARCB1 loss in ATRT. [CUT&Run]
GEO Series GSE273418. Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
EZH2 INHIBITION ENHANCES T CELL IMMUNOTHERAPIES BY INDUCING LYMPHOMA IMMUNOGENICITY AND IMPROVING T CELL FUNCTION (CUT&RUN)
GEO Series GSE278481. Homo sapiens; Mus musculus. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
SATB2 organizes the 3D genome architecture of cognition in cortical neurons [CUT&RUN]
GEO Series GSE222608. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Investigating oncoprotein-mediated chromatin dysregulation in Drosophila melanogaster uncovers novel modifiers of the developmental impact of H3 K27M and EZHIP [CUT&Run]
GEO Series GSE300081. Drosophila melanogaster. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cut-and-Run in situ factor profiling maps DNA binding and 3D contact sites at high resolution
GEO Series GSE84474. Saccharomyces cerevisiae; Homo sapiens. 126 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Recruitment to the nuclear periphery enhances repression of H3K9me2-marked genes and transposons to shape cell fate [CUT&RUN]
GEO Series GSE264603. Mus musculus. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CUT&RUN (H3K27Ac3) in MGE, CGE, LGE and cortical regions from mouse embryonic forebrain
GEO Series GSE201400. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Maternal Smchd1 regulates Hox gene expression and patterning in the mouse embryo [H2AK119ub CUT&RUN]
GEO Series GSE183739. Mus musculus; Drosophila melanogaster. 28 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis.
High-dimensional analysis reveals increased chromatin heterogeneity and reduced histone acetylation driven by mutant-IDH1 [Cut&Run]
GEO Series GSE238104. Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A dual histone code specifies the binding of heterochromatin protein Rhino to a subset of piRNA source loci [CUT&RUN chromodomains in S2 cells]
GEO Series GSE247151. Drosophila melanogaster. 35 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Menin-MLL complex cooperates with NF-Y to promote HCC survival [CUT&RUN]
GEO Series GSE293692. Homo sapiens. 72 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Drosophila melanogaster Set8 and L(3)mbt function in gene expression independently of histone H4 lysine 20 methylation [GFP-L3mbt_CUT&RUN]
GEO Series GSE268820. Drosophila melanogaster. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
SWI/SNF Chromatin Remodeling Complex Orchestrates Sequential Binding of Key Transcription Factors in B Cells and Restricts Aggressive Lymphoma [human CUT&RUN]
GEO Series GSE262094. Homo sapiens. 46 samples. Type: Other.
A postnatal molecular switch drives the activity-dependent maturation of parvalbumin interneurons [CUT&RUN]
GEO Series GSE256442. Mus musculus. 3 samples. Type: Other.
Cut&Run analysis for transcription factors in TAL1-FKBP12 Jurkat cells
GEO Series GSE225936. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Comparison of tumor-associated YAP1 fusions identifies a recurrent set of functions critical for oncogenesis [Cut&Run ChIP-seq]
GEO Series GSE144581. Homo sapiens. 45 samples. Type: Other.
Thymic epithelia amplify noise in chromatin accessibility via p53 repression to impose immune tolerance [CUT&Run]
GEO Series GSE290716. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Spatial transcriptomics and CUT&RUN of the aging mouse brain reveal origins of inflammation in the white matter
GEO Series GSE284202. Mus musculus. 70 samples. Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing.
EWSR1::FLI1 fusion oncoproteins’ regulation of ETS1 (CUT&RUN)
GEO Series GSE243277. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.