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66 results for “Carbon limitation”
Data from: Coastal darkening substantially limits the contribution of kelp to coastal carbon cycles
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Natural fallow alleviates carbon and nitrogen limitation of microorganisms and plants in paddy fields
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Wetting‐induced soil CO2 emission pulses are driven by interactions among soil temperature, carbon, and nitrogen limitation in the Colorado Desert
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Climate-driven limits to future carbon storage in California's wildland ecosystems
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Near Term Carbon Tax Policy in the U.S. Economy: Limits to Deep Decarbonization.
<p>This paper explores carbon dioxide (CO<sub>2</sub>) tax policies from 2015 to 2030 in the United States economy using an the TIMES energy system optimization model. The files attached include the input database and constraints used for the simulations as well as a file summarizing all the outputs. </p> <p> </p>
Data from: Ephemeral forest regeneration limits carbon sequestration potential in the Brazilian Atlantic Forest
<p>This dataset contains native forest cover and planted forests data for 3014 municipalities in the Brazilian Atlantic Forest, Brazil, used in the paper: "Piffer, P.R., Calaboni, A., Rosa, M.R., Schwartz, N.B., Tambosi, L.R., & Uriarte, M. (2021) Ephemeral forest regeneration limits carbon sequestration potential in the Brazilian Atlantic Forest. Global Change Biology". The land cover data was obtained from the Mapbiomas Collection 5 products and is publicly available at <a href="https://mapbiomas.org/">https://mapbiomas.org/</a> for download. Socioeconomic data was obtained from the Brazilian Institute of Geography and Statistics, available at https://sidra.ibge.gov.br. More information on the dataset, analysis and results can be found in the associated manuscript referenced above.</p>
Supplementary information_Limited organic carbon burial by the rusty carbon sink in Swedish fjord sediments.
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Data from: Sign epistasis limits evolutionary trade-offs at the confluence of single- and multi-carbon metabolism in Methylobacterium extorquens AM1
Adaptation of one set of traits is often accompanied by attenuation of traits important in other selective environments, leading to fitness trade-offs. The mechanisms that either promote or prevent the emergence of trade-offs remain largely unknown, and are difficult to discern in most systems. Here, we investigate the basis of trade-offs that emerged during experimental evolution of Methylobacterium extorquens AM1 to distinct growth substrates. After 1500 generations of adaptation to a multi-carbon substrate, succinate (S), many lineages had lost the ability to use one-carbon compounds such as methanol (M), generating a mixture of M+ and M− evolved phenotypes. We show that trade-offs in M− strains consistently arise via antagonistic pleiotropy through recurrent selection for loss-of-function mutations to ftfL (formate-tetrahydrofolate ligase), which improved growth on S while simultaneously eliminating growth on M. But if loss of FtfL was beneficial, why were M trade-offs not found in all populations? We discovered that eliminating FtfL was not universally beneficial on S, as it was neutral or even deleterious in certain evolved lineages that remained M+. This suggests that sign epistasis with earlier arising mutations prevented the emergence of mutations that drove trade-offs through antagonistic pleiotropy, limiting the evolution of metabolic specialists in some populations.
Data from: Sign epistasis limits evolutionary trade-offs at the confluence of single- and multi-carbon metabolism in Methylobacterium extorquens AM1
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Data from: Ephemeral forest regeneration limits carbon sequestration potential in the Brazilian Atlantic Forest
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Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
GEO Series GSE156677. Arabidopsis thaliana. 36 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome response to carbon-limiting conditions.
GEO Series GSE147051. Sphingomonas sp. AAP5. 12 samples. Type: Expression profiling by high throughput sequencing.
Global transcriptomic changes following carbon limitation and elevated carbon dioxide in Nannochloropsis oceanica IMET1: Illumina sequencing
GEO Series GSE55861. Nannochloropsis oceanica. 18 samples. Type: Expression profiling by high throughput sequencing.
Integrated functional analysis of engineered carbon limitation in the CO2/HCO3-uptake deficient ∆ndhD3/ndhD4/cmpA/sbtA mutant of Synechocystis sp. PCC 6803
GEO Series GSE68250. Synechocystis sp. PCC 6803. 12 samples. Type: Expression profiling by array.
Transcription Response by sulfur chemolithoautotroph Thiomicrospira crunogenato dissolved inorganic carbon and ammonia limitation
GEO Series GSE36254. Hydrogenovibrio crunogenus. 6 samples. Type: Expression profiling by array.
M. sedula transcriptional response under "strict" carbon-limited autotrophy compared to carbon "rich" autotrophy and heterotrophy
GEO Series GSE39944. Metallosphaera sedula; Metallosphaera sedula DSM 5348. 3 samples. Type: Expression profiling by array.
Anaerobic carbon-limited retentostat cultivation of Lactobacillus plantarum WCFS1
GEO Series GSE18340. Lactiplantibacillus plantarum; Lactiplantibacillus plantarum WCFS1. 5 samples. Type: Expression profiling by array.
Adaptation of Bacillus subtilis carbon core metabolism to simultaneous nutrient limitation and osmotic challenge
GEO Series GSE53333. Bacillus subtilis; Bacillus subtilis subsp. subtilis str. 168. 9 samples. Type: Expression profiling by array.
Steady state growth under inorganic carbon limitation increases energy consumption for maintenance and enhances nitrous oxide production in Nitrosomonas europaea
GEO Series GSE70988. Nitrosomonas europaea. 9 samples. Type: Expression profiling by high throughput sequencing.
Transcriptional responses of Saccharomyces cerevisiae to carbon limitation in aerobic chemostat cultures
GEO Series GSE8088. Saccharomyces cerevisiae. 3 samples. Type: Expression profiling by array.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.