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195 results for “Coupled models”
Data for The importance of cloud phase when assessing surface melting in an offline coupled firn model over Ross Ice shelf, West Antarctica
<p>This is the data used in the paper "The importance of cloud phase when assessing surface melting in an offline coupled firn model over Ross Ice shelf, West Antarctica"</p>
Data for: Coupling dynamic energy budget and population dynamic models to inform stock enhancement in fisheries management
Open the record for dataset details and reuse information.
Efficient ensemble data assimilation for coupled models with the Parallel Data Assimilation Framework: Example of AWI-CM - output files and plot scripts
<p>This archive outputs_plotting.zip contains the raw output files (STDOUT) from the scaling runs performed for the paper "Efficient ensemble data assimilation for coupled models with the Parallel Data Assimilation Framework: Example of AWI-CM" submitted to GMD (gmd-2019-167). Further the scripts to extract timing information from the raw output files and plot scripts are included.</p> <p>The archive SST-DA_plotting.zip contains the scripts to compute RMS errors for the free ensemble run (output file in gmd_N46_free.zip) and the SST assimilation run (gmd_N46_sst.zip) and to plot these. The two output files contain each a Netcdf file with the ensemble mean state information and the stdout file from the model run.</p>
Input data for performing chemistry coupled PALM model system 6.0 simulations with different chemical mechanisms
<p>The data presented here comprised of input files that have been used to run chemistry coupled PALM model system 6.0 simulations for the article entitled "Development of an atmospheric chemistry model coupled to the PALM model system 6.0: Implementation and first applications". In this article we describe the implementation of an online-coupled gas-phase chemistry model in the turbulence resolving PALM model system 6.0.</p> <p>List of the input data required for performing chemistry model simulations with different chemical mechanisms is given below. A text file comprised of measured concentrations of NO, NO<sub>2</sub> and O<sub>3</sub> is also added.</p> <ol> <li>Fortran parameter (PARIN) files for four mechanisms and one meteorology-only simulation.</li> <li>Static file</li> <li>Dynamic file</li> <li>Two files (shortwave and longwave input data) for rrtmg radiation model</li> <li>Observation from two air quality stations in Berlin, Germany .</li> <li>PALM model source code revision 4450 (palm_trunk_rev-4450.tar.gz)</li> <li>PALM model source code revision 4601 (palm_trunk_rev-4601.tar.gz)</li> </ol> <p>The PALM model system 6.0 revision 4451 and 4601 (for chemistry flux profiles only) have been used for these simulations. </p>
Real-time benchmark dynamics of the Ohmic Spin-Boson Model computed with Time-Dependent Variational Matrix Product States. (TDVMPS) coupling strength and temperature parameter space
<p>Data describing the complete propagators (maps) for the evolution of the Ohmic Spin-Boson Model are made available, here. Using a time-dependent variotnal matrix product states (TDVMPS) respresentation of the complete spin-environment wave function, non -perturbative results are presented over a wide range of coupling strengths, temperatures and initial conditions. The results in this repository are associated with the article: </p> <p>https://www.preprints.org/manuscript/202012.0016/v1 </p> <p>A mathematica notebook that allows the data to be visualised and manipulated is also provided. </p>
Data for manuscript: An ecogeomorphic framework coupling sediment modeling with invasive riparian vegetation dynamics
<p>Datasets (aside from the publicly available GIS datasets) used in the analyses presented in the manuscript "An ecogeomorphic framework coupling sediment modeling with invasive riparian vegetation dynamics." </p>
Aerodynamics code used in Wind Energy Science paper "Comparison of a coupled near- and far-wake model with a free-wake vortex code"
<p>This research code has been developed from the start of my PhD as a first step before the HAWC2 implementation of the near wake model.</p> <p>It can be used to make aerodynamic computations of a stiff wind turbine rotor, and it includes</p> <ul> <li>A BEM and far wake model implementation based on the one in HAWC2</li> <li>An attached flow unsteady airfoil aerodynamics model including the modifications described in the WES article</li> <li>Most importantly a near wake model implementation including all major modifications except the recent stand still extension presented at TORQUE 2016</li> </ul> <p>All the data files need to be in a subfolder 'NREL_5MW' located in the same folder as the compiled source code.</p> <p>With the present (hardcoded) settings, the program will simulate the NREL 5 MW reference turbine for 650 seconds, with blade vibrations according to different prescribed mode shapes after steady state is reached. The aerodynamics model is a coupled near and far wake model. The integrated aerodynamic work during 1 period of the different prescribed vibrations will be output in the file 'aerowork.out' .</p> <p>The NREL 5 MW turbine is described in:</p> <p>Jonkman, J., Butterfield, S., Musial,W., and Scott, G.: Definition of a 5-MW Reference Wind Turbine for Offshore System Development, National Renewable Energy Laboratory, 2009.</p>
Data Release for Retreat and Regrowth of the Greenland Ice Sheet During the Last Interglacial as Simulated by the CESM2-CISM2 Coupled Climate–Ice Sheet Model
<p>CESM2 and CISM2 data files for figures in "Retreat and Regrowth of the Greenland Ice Sheet During the Last Interglacial as Simulated by the CESM2-CISM2 Coupled Climate–Ice Sheet Model" (Sommers et al., 2021, Paleoceanography and Paleoclimatology)</p>
Main output data used in "Coupling the regional climate MAR model with the ice sheet model PISM mitigates the melt-elevation positive feedback" (Delhasse et al., 2024)
<p>Outputs used in:</p> <p><em>Delhasse, A., Beckmann, J., Kittel, C., and Fettweis, X.: Coupling MAR (Modèle Atmosphérique Régional) with PISM (Parallel Ice Sheet Model) mitigates the positive melt–elevation feedback, The Cryosphere, 18, 633–651, https://doi.org/10.5194/tc-18-633-2024, 2024.</em></p> <p>MAR-PISM coupling experiments outputs over 1991-2200. The main experiments are:</p> <ul> <li>MAPI-2w: 2-way coupling, consideration <em>online</em> of the melt-elevation feedback (evolving topography in MAR).</li> <li>MAPI-1w: 1-way coupling, consideration of the melt-elevation feedback only with the <em>offline</em> correction (Franco <em>et al.</em>, 2012) of the MAR outputs (fixed topography in MAR).</li> <li>MAPI-0w: 0-way coupling, no consideration of the melt-elevation feedback (fixed topography in MAR and no correction during interpolation).</li> </ul> <p>MAR files contain yearly SMB (surface mass balance) and ST (surface temperature) interpolated (with correction) on the PISM-4.5km grid. Gradients used for the correction of the melt-elevation feedback are also given for both variables. SMB and ST are the two required MAR fields to couple MAR with PISM. </p> <p>PISM files contain yearly ice thickness (THK) and ice mask (MASK) as simulated by PISM for each of the three experiments. </p> <p>The MAR code used in this dataset is tagged as v3.11.3 on https://gitlab.com/Mar-Group/MARv3# (last access: 23 January 2024) (MARTeam, 2024). The PISM code used is tagged as PISMv1.2.2 on <a href="https://github.com/pism/pism/releases/tag/v1.2.2" target="_blank" rel="noopener noreferrer">https://github.com/pism/pism/releases/tag/v1.2.2</a> (last access: 23 January 2024). Other coupling scripts are also available upon request by email (<a href="mailto:alison.delhasse@uliege.be" target="_blank" rel="noopener noreferrer">alison.delhasse@uliege.be</a>).</p> <p>If you need other variables from MAR or PISM, send us an email (alison.delhasse@uliege.be, johanna.beckmann@monash.edu) and we will be glad to help you. We will also be happy to share the scripts we have developed to analyse the outputs and make the figures in this paper if needed. Please cite the paper if you use these MAR-PISM outputs.<br><br>Data usage notice:</p> <p>If you use any of these results, please acknowledge the work of the people involved in producing them. Acknowledgments should be similar to the one below that contains information related to MAR and PISM. To document MAR scientific impact and enable ongoing support of the model, users are likely encouraged to contact me to add their works to the list of MAR-related publications. </p> <p>"We thank A. Delhasse and J. Beckmann, as well as the MAR and PISM teams which make available the model outputs. We also thank agencies (F.R.S - FNRS, CÉCI, and the Walloon Region) that provided computational resources for MAR-PISM simulations. "</p> <p>You should also refer to and cite the following paper in its latest version:</p> <p><em>Delhasse, A., Beckmann, J., Kittel, C., and Fettweis, X.: Coupling MAR (Modèle Atmosphérique Régional) with PISM (Parallel Ice Sheet Model) mitigates the positive melt–elevation feedback, The Cryosphere, 18, 633–651, https://doi.org/10.5194/tc-18-633-2024, 2024.</em></p> <p>Reference</p> <p><em>Franco, B., Fettweis, X., Lang, C., and Erpicum, M.: Impact of spatial resolution on the modelling of the Greenland ice sheet surface mass balance between 1990–2010, using the regional climate model MAR, The Cryosphere, 6, 695–711, https://doi.org/10.5194/tc-6-695-2012, 2012.</em></p> <p><em>MARTeam: MARv3.11, GitLab [data set], <a href="https://gitlab.com/Mar-Group/MARv3" target="_blank" rel="noopener">https://gitlab.com/Mar-Group/MARv3#</a> (last access: 28 May 2022), 2021.</em></p>
On the computation of stable coupled state-space models for dynamic substructuring applications
<p>This paper aims at introducing a methodology to compute stable coupled state-space models for dynamic substructuring applications by introducing two novel approaches targeted to accomplish this task: (a) a procedure to impose Newtons's second law without relying on the use of undamped RCMs (residual compensation modes) and (b) a novel approach to impose stability on unstable coupled state-space models. The enforcement of stability is performed by dividing the unstable model into two different models, one composed by the stable poles (stable model) and the other composed by the unstable ones (unstable model). Then, the poles of the unstable state-space model are forced to be stable, leading to the computation of a stabilized state-space model. If this model is composed by real poles, it should be divided into two different ones, one composed by the pairs of complex conjugate poles and the other composed by the real poles. Afterwards, to make sure that the Frequency Response Functions (FRFs) of the stabilized model well match the FRFs of the unstable model, the Least-Squares Frequency Domain (LSFD) method is exploited to update the modal parameters of the stabilized model composed by the pairs of complex conjugate poles. The validity of the proposed methodologies is presented and discussed by exploiting experimental data. Indeed, by exploiting the FRFs of a real system, accurate state-space models respecting Newton's second law are computed. Then, decoupling and coupling operations are performed with the identified state-space models, no matter the models resultant from the decoupling/coupling operations are unstable. Stability is then imposed on the computed unstable coupled model by following the approach proposed in this paper. The methodology proved to work well on these data. Moreover, the paper also shows that the coupled state-space models obtained using this methodology are suitable to be exploited in time-domain analyses and simulations.</p>
Monsoon Mission Coupled Forecast System Version 2.0: Model Description and Indian Monsoon Simulations Figures
<p>Monsoon Mission Coupled Forecast System Version 2.0: Model Description and Indian Monsoon Simulations Figures</p>
Dataset of paper "Predicting the size of silver nanoparticles synthesised in flow reactors: Coupling population balance models with fluid dynamic simulations"
<p>Dataset of paper "Predicting the size of silver nanoparticles synthesised in flow reactors: Coupling population balance models with fluid dynamic simulations"</p>
GSA-GxE: A Framework of Global Sensitivity Analysis of Maize Coupled with Genetics by Environments (GxE) Model
<p>We present the coupled Global Sensitivity Analysis (GSA) and Genetics by Environment model (GxE) framework (Sarzaeim and Muñoz-Arriola, submitted). GSA-GxE uses the sensitivity analysis method PAWN (Pianosi and Wagener, 2015) coupled with the environmental covariance matrix used in GxE modeling (Jarquin et al., 2014). GSA-GxE estimates the relative sensitivity of maize yield predictability to hydroclimate variables that interact with maize genetics from the environmental covariances and genetic marker structures. We include hydroclimate variables like temperature (T), solar radiation (SR), rainfall (R), and relative humidity (RH). The data, codes, and scripts presented here were used to develop and test the GSA-GxE framework. They were built upon an enhanced version of the multi-dimensional Genomes to Fields (G2F) database consisting of maize genetic, phenotypic, environmental, and metadata in 84 field experiments in 2014-2017 across the U.S. and province of Ontario, Canada (Sarzaeim et al., 2020, 2022, 2023). This digital package contains a multi-dimensional Climate and Omics dataset, the GSA-GxE framework created in Python, and the GxE model developed in R.</p> <p><strong>Acknowledgement</strong></p> <p>This work was supported by the Agriculture and Food Research Initiative Grant number NEB-21-176 and NEB-21-166 from the USDA National Institute of Food and Agriculture, Plant Health and Production and Plant Products: Plant Breeding for Agricultural Production. In addition, we thank the Genomes to Fields (G2F) Initiative for providing the database; and Quantifying Life Sciences Initiative at the University of Nebraska-Lincoln.</p>
Supplemental materials to "A quasi-2D model of convectively coupled vortices"
<p>math_derivation_note: A hand-written note of key mathematical steps, mostly about section 4 and Appendix C. </p> <p>quasi-2D model.zip: The package of the quasi-2D model code.</p> <p>postprocess_code_quasi2D.zip: The package of the postprocessing codes and intermediate files (.mat) related to the quasi-2D simulations.</p> <p>postprocess_code_CM1.zip: The package of the postprocessing codes and intermediate files (.mat) related to the CM1 simulation.</p> <p>Group_dh.avi: The Group-dh experiments with varying convective intermittency (dh/H). The first, second, and third column shows Group-dh-1, Ref, and Group-dh-2. Only the first member of each experimental ensemble is shown. The first row shows the raw vorticity normalized by f. The second shows the Gaussian-filtered vorticity (with a length scale of <em>l</em>=30 km) normalized by f. The black contour is the zero-value contour of the Gaussian-filtered vorticity.</p> <p>Group_dL.avi: The Group-<em>l</em> experiments with varying convective filter length <em>l.</em> The first, second, and third column shows Ref (<em>l</em>=30 km), Group-<em>l</em>-1 (<em>l</em>=45 km), and Group-<em>l</em>-2 (<em>l</em>=60 km). Only the first member of each experimental ensemble is shown. The first row shows the raw vorticity normalized by f. The second shows the Gaussian-filtered vorticity (with a length scale of <em>l)</em> normalized by f. The black contour is the zero-value contour of the Gaussian-filtered vorticity.</p> <p>Group_fE.avi: The Group-fE experiments with varying Coriolis parameter f and Ekman number E<em>.</em> They differ in the strength of the rotational flow. The first, second, and third column shows Group-fE-1 (f=1e-5 1/s), Ref (f=1e-4 1/s), and Group-fE-2 (f=2e-4 1/s). Only the first member of each experimental ensemble is shown. The first row shows the raw vorticity normalized by f. The second shows the Gaussian-filtered vorticity (with a length scale of <em>l=</em>30 km<em>)</em> normalized by f. The black contour is the zero-value contour of the Gaussian-filtered vorticity.</p> <p>Group_eta.avi: The Group-eta experiments with varying mesoscale feedback parameter eta<em>.</em> They differ in the strength of the mesoscale feedback. The first, second, and third column shows Group-eta-1 (eta=0), Group-eta-2 (eta=1.2), and Group-eta-3 (eta=1.4). Only the first member of each experimental ensemble is shown. The first row shows the raw vorticity normalized by f. The second shows the Gaussian-filtered vorticity (with a length scale of <em>l=</em>30 km<em>)</em> normalized by f. The black contour is the zero-value contour of the Gaussian-filtered vorticity.</p> <p>Please contact Dr. Hao Fu (haofu@uchicago.edu) if you have any questions!</p>
Supplementary Material for "Model-Free Analysis of Experimental Residual Diploar Couplings in Small Organic Compounds"
<p>NMR Spectra (CLIP-HSQC, perfectCLIP-HSQC, TSE-PSYCHEDELIC) of isopinocampheol in six alignment conditions.</p> <p>Simulation input (experimental RDC data in six alignment media, input geometries, keywords) and output files (simulation / geometry trajectories, alignment data, SECONDA analysis) for isopinocampheol runs with the TITANIA software.</p>
Tropical Cyclone Characteristics Represented by the Ocean Wave Coupled Atmospheric Global Climate Model Incorporating Wave-Dependent Momentum Flux
<p>This is dataset of global climate model simulation used in the paper "Tropical Cyclone Characteristics Represented by the Ocean Wave Coupled Atmospheric Global Climate Model Incorporating Wave-Dependent Momentum Flux" by Shimura et al. (2021)</p> <p>Followings are the explanation of data file.</p> <p>*** File naming rule ***<br> {data_group_name}_Exp{experiment_name}_TCnumber{tropical_cyclone_case_number}.nc</p> <p> data_group_name<br> - atm<br> - track</p> <p> experiment_name<br> - Wind<br> - Wave<br> - SlabO</p> <p> tropical_cyclone_case_number<br> - 001<br> - 002<br> ...<br> - 099<br> - 100</p> <p>*** Description on each data group ***<br> <br> atm: three dimentional atmospheric velocity data<br> - level: pressure levels for vertical atmospheric data<br> - longitude: Longitude<br> - latitude: Latitude<br> - velocity_u_component: averaged atmospheric eastward velocity</p> <p> track: data around tropical cyclone track<br> - time: UTC time (YYYYMMDDHH)<br> - longitude_center: Longitude of typhoon center<br> - latitude_center: Latitude of typhoon center<br> - central_pressure: typhoon central pressure<br> - maximum_surface_wind: typhoon maximum surface wind speed<br> - longitude_sfc: Longitude for surface data around typhoon center<br> - latitude_sfc: Latitude for surface data around typhoon center<br> - surface_wind_u_component: surface eastward wind around typhoon<br> - surface_wind_v_component: surface northward wind around typhoon<br> - sea_level_pressure: sea level pressure around typhoon<br> - latent_heat_flux: surface upward latent heat flux<br> - sensible_heat_flux: surface upward sensible heat flux<br> - time_atm: UTC time (YYYYMMDDHH) for atmospheric data<br> - level: pressure levels for atmospheric data<br> - longitude_atm: Longitude for atmospheric data around typhoon center<br> - latitude_atm: Latitude for atmospheric data around typhoon center<br> - velocity_u_component: 3d eastward velocity around typhoon<br> - velocity_v_component: 3d northward velocity around typhoon</p> <p> </p>
Representing surface heterogeneity in land-atmosphere coupling in E3SMv1 single-column model over ARM SGP during summertime - E3SM SCM data and code
<p>This dataset contains post-processed E3SM single-column model output and code used to produce the figures in the manuscript that we are targeting Geoscientific Model Development to submit. </p>
Assessment of the sea surface temperature diurnal cycle in CNRM-CM6-1 based on its 1D coupled configuration - model outputs
<p>These tar file are associated with an article submitted to Geoscientific Model Development under identification number gmd-2021-413 (https://www.geoscientific-model-development.net): Assessment of the sea surface temperature diurnal cycle in CNRM-CM6-1 based on its 1D coupled configuration<br> By A. Voldoire, R. Roehrig, H. Giordani, R. Waldman, Y. Zhang, S. Xie, MN Bouin</p> <p>3 files correspond to code components that can be distributed freely</p> <p>- surfex.tgz for the surfex v8.0 distributed under a Cecill-C License</p> <p>- oasis-mct-3.0.tgz for oasis-mct3.0 distributed under a GNU General Public License</p> <p>- nemo_v3.6.tgz for the nemo, distibuted under a Cecill-C License</p> <p>These three components are mainly fortran codes.</p> <p>The last file "<a href="https://zenodo.org/api/files/e94922e7-22eb-445b-acc3-03e11ca1af6b/CNRM-CM6-1D_published_experiments.tgz?versionId=2460ec63-89f5-415f-9613-1954f048b238">CNRM-CM6-1D_published_experiments.tgz </a>" contains all model outputs that have been used in this article. These model outputs are in netcdf format and organized by experiment.</p>
The Regional Coupled Suite (RCS): application of a flexible regional coupled modelling framework to the Indian region at km-scale
<p>Supporting data for figures in GMD draft paper: The Regional Coupled Suite (RCS): application of a flexible regional coupled modelling framework to the Indian region at km-scale.</p>
The prediction data analyzed in the article: "An improved regional coupled modeling system for Arctic sea ice simulation and prediction: a case study for 2018"
<p>The outputs of seasonal predictions with the Coupled Arctic Prediction System version 1 analyzed in the article, "An improved regional coupled modeling system for Arctic sea ice simulation and prediction: a case study for 2018", including:</p> <p>Sea ice concentration (SIC)</p> <p>Sea ice thickness (SIT)</p> <p>Sea surface temperature (SST)</p> <p>Ice mass budget diagnostics</p> <p>Accumulated downward shortwave radiation at the surface (ASWDN)</p> <p>Accumulated downward longwave radiation at the surface (ALWDN)</p> <p>Near surface air temperature (T2) </p> <p>Temperature and salinity profile of the upper ocean under sea ice </p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.