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48 results for “DNA alignment”
Aligned and curated mtDNA sequences from: Ancient DNA reveals interstadials as a driver of common vole population dynamics during the last glacial period
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Aligned DNA sequences of Vanilla
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Aligned DNA sequence matrix for phylogenetic analyses in the article "Description and phylogenetic relationships of a new trans-Andean species of Elachistocleis Parker 1927 (Amphibia, Anura, Microhylidae)"
<p>Aligned DNA sequence matrix for phylogenetic analyses in the article "Description and phylogenetic relationships of a new trans-Andean species of <em>Elachistocleis</em> Parker 1927 (Amphibia, Anura, Microhylidae)"</p> <p>Gene partitions are arranged as follows (tRNAs are included as part of larger adjacent genes):</p> <p>16S = 1-1165;<br> BDNFcodonPos1 = 1166 - 1874\3;<br> BDNFcodonPos2 = 1167 - 1875\3;<br> BDNFcodonPos3 = 1168 - 1876\3;<br> cmyccodonPos1 = 1878 - 2319\3;<br> cmyccodonPos2 = 1879 - 2320\3;<br> cmyccodonPos3 = 1877 - 2318\3;<br> CO1codonPos1 = 2321 - 2981\3;<br> CO1codonPos2 = 2322 - 2979\3;<br> CO1codonPos3 = 2323 - 2980\3;<br> histcodonPos1 = 2983 - 3307\3;<br> histcodonPos2 = 2984 - 3308\3;<br> histcodonPos3 = 2982 - 3309\3;<br> siacodonPos1 = 3311 - 3704\3;<br> siacodonPos2 = 3312 - 3705\3;<br> siacodonPos3 = 3310 - 3706\3;<br> tyrcodonPos1 = 3708 - 4263\3;<br> tyrcodonPos2 = 3709 - 4264\3;<br> tyrcodonPos3 = 3707 - 4262\3;<br> 28S = 4265-5084;<br> 12S = 5085-6171;</p> <p> </p>
Aligned DNA sequence matrix for phylogenetic analyses in the article "Three new species of frogs of the genus Pristimantis (Anura: Strabomantidae) with a redefinition of the P. lacrimosus species group"
<p>Aligned DNA sequence matrix for phylogenetic analyses of the article "Three new species of frogs of the genus Pristimantis (Anura: Strabomantidae) with a redefinition of the P. lacrimosus species group". The matrix is in NEXUS format.</p> <p>Gene partitions are arranged as follows (tRNAs are included as part of larger adjacent genes):</p> <p>RAG1 codon position 1 = 1-625\3;<br> RAG1 codon position 2 = 2-626\3;<br> RAG1 codon position 3 = 3-627\3;<br> 12S rRNA = 628-1440;<br> 16S rRNA = 1441-3071;<br> ND1 codon position 1 = 3072-3972\3;<br> ND1 codon position 2 = 3073-3973\3;<br> ND1 codon position 3 = 3074-3974\3;</p>
Supplementary material 1 from: Nugent CM, Adamowicz SJ (2020) Alignment-free classification of COI DNA barcode data with the Python package Alfie. Metabarcoding and Metagenomics 4: e55815. https://doi.org/10.3897/mbmg.4.55815
File S1 – Training, test, and validation data sets used in model training and analysis
FORAlign: Accelerating gap-affine DNA pairwise sequence alignment using FOR-blocks based on FOur Russians approach with linear space complexity
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Synthetic DNA co-immunization with vaccine-aligned common consensus nucleoprotein and hemagglutinin protects mice against lethal influenza infection with a single immunization
GEO Series GSE306862. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein-DNA complexes
GEO Series GSE140923. Saccharomyces cerevisiae. 15 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.