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121 results for “Decomposers”
Data for: Positive feedback on climate warming by stream microbial decomposers indicated by a global space-for-time substitution study
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Imposing primary colonisation success of wood-decomposing fungi in birch wood alters microbiome composition and carbon release rates
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Data from: Macro-detritivores assist resolving the dryland decomposition conundrum by engineering an underworld heaven for decomposers
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Drought effects on root and shoot traits and their decomposability
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Data from: A positive feedback to climate change: the effect of temperature on the respiration of key wood-decomposing fungi does not decline with time
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Detecting phylogenetic signal and adaptation in papionin cranial shape by decomposing variation at different spatial scales
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Variability in terrestrial litter decomposition can be explained by nutrient allocation strategies among soil decomposer communities
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Phospholipid fatty acids (PFLA) on decomposed litter: Nitrogen limitation in decomposition
Modern agriculture and fossil fuel combustion contribute to the transfer of N from largely inert pools (atmospheric N2, fossil fuel reserves) to biologically reactive forms that can be transported downwind from agricultural or industrial areas to ecosystems that historically may have experienced low levels of N inputs. Understanding how increased N inputs alter the cycling of another biologically important element, C, has been impeded by uncertainties about N effects on the process of decomposition. To date, ecologists remain unable to predict when, where, and in what forms N addition stimulates rates of decomposition. For example, recent work showed that in eight low-N sites in Central Minnesota, litter N was positively correlated with decomposition, suggesting N limitation of decomposition, yet addition of inorganic N fertilizer increased decomposition in only two of eight sites. These paradoxical results call into question the assumption that the often-observed correlation between substrate N concentration and decomposition arises because N limits decomposition. Research is addressing three interrelated questions:* (1) Why do litter N and externally supplied N have contrasting effects on decomposition in low-N ecosystems? (2) Do different forms of N (organic vs. inorganic; substrate vs. externally supplied) affect the activity, function and composition of the decomposer community differently, and, if so, what are the consequences for decomposition? (3) What are temporal dynamics of the activity, function, and composition of the decomposer community and do these dynamics depend upon the amount and forms of N supplied to the decomposer community?* These questions will be addressed using a 4-y decomposition experiment manipulating the quantity and form of N available to decomposers via use of substrates ranging in N concentrations and of inorganic (ammonium nitrate) and organic (amino acids) N fertilizers. The response of microbial biomass, stoichiometry, efficiency
Data from: Functional diversity of decomposers modulates litter decomposition affected by plant invasion along a climate gradient
<p>1. Litter decomposition is fundamental to carbon (C) and nutrient cycling in ecosystems, which could be altered by plant invasion. The impacts of plant invasion on litter decomposition are generally predicted by traits difference between leaf litters of invasive and non-invasive species. However, plant invasion not only changes litter composition, but might also increase the activity or change the functional diversity of decomposers to alter litter decomposition, which is barely studied, and the effect could be different under varied climate conditions.</p> <p>2. We studied decomposition of litters from non-invasive and invasive native plants, as affected by litter treatments (in a mixture or alone) and decomposer organisms of different functional groups (by controlling the mesh size of litterbags), in sites with or without an invasive woody grass, Moso bamboo (Phyllostachys edulis), at seven locations across a climate gradient.</p> <p>3. We show that greater decomposer functional diversity, particularly the presence of macrofauna, accelerated the cycling of litter C and nitrogen (N), increased the climatic sensitivities of decomposition rates, but decreased the N use efficiency of decomposers (represented by litter C to N loss ratio). Litter decomposed in mixtures decomposed faster (by 9.5%) and had more N loss (by 28.9%) than that of in monoculture, regardless of the functional diversity of decomposers. In contrast, the invasion of Moso bamboo slowed decomposition and decreased N use efficiency; this negative effect could be reversed when macrofauna was excluded from the decomposition process, which challenges the nutrient facilitation hypothesis. Bamboo invasion depressed the climatic sensitivity of decomposer functional groups when macrofauna was present but not when macrofauna was excluded.</p> <p>4. Synthesis. We found that the functional diversity of decomposer organisms modulates and largely determines litter decomposition affected by a woody grass invasion along a climate gradient. These results suggest that, under current and future climate, including the changes in decomposer functional groups, particularly macrofauna, and their interaction with litter traits, would provide a mechanistic and more reliable prediction on ecosystem functions altered by invaders than a functional trait-based framework.</p>
Plant communities, grazing intensity, soil properties and decomposers in grasslands across elevation in the Eastern Carpathians in Ukraine
<p>This data set contains information on plant community properties, grazing intensity, elevation, soil properties and density of soil decomposers collected in 2006 and 2007 from the 31 semi-natural grasslands exposed to cattle grazing along elevation gradient at large topographic scale ranging from the Carpathian Mountains, across the adjacent foothills to the plain areas. Plant community properties are represented by the following variables for each of the 31 study grassland: number of species (species number 100 m<sup>-2</sup>), number of functional groups 100 m<sup>-2 </sup>(that is, legumes, grasses, rushes and sedges, and non-legume forbs), proportion of undesirable weeds (%), number of species of legumes (species number 100 m<sup>-2</sup>), number of species of grasses (species number 100 m<sup>-2</sup>), number of species of rushes and sedges (species number 100 m<sup>-2</sup>), and number of non-legume forbs (species number 100 m<sup>-2</sup>). Grazing intensity is measured as cattle density (livestock units h<sup>-1</sup>). Soil properties are represented for each 31 study grassland by bare soil exposure (%) , soil organic carbon content (%), and soil pH. Density of soil decomposers are represented by biomass of earthworms g m<sup>-2</sup> and abundance of soil microorganisms cells × 10<sup>8</sup> g (dry soil)<sup>-1</sup>. Plant community composition is based on individual species' canopy cover. This dataset also contain information on the following plant traits for each plant species (n=175 species) found across the 31 study pastures across 2006 and 2007 sampling years: family of the plant species, belonging to legumes, grasses, rushes and sedges, non-legume forbs, and undesirable weeds. All data are averages across the two sampling years. </p>
Data from: Wood-inhabiting insects can function as targeted vectors for decomposer fungi
Most wood-inhabiting fungi are assumed to be dispersed primarily by wind, with the exception of a few species involved in mutualistic relationships with insects. In this study we tested whether several species of wood-inhabiting insects can function as dispersal vectors for non-mutualistic fungi, which would indicate that wood-inhabiting fungi can benefit from targeted animal-mediated dispersal. We sampled wood-inhabiting beetles (Coleoptera) from freshly felled wood experimentally added to forests and used DNA metabarcoding to investigate the fungal DNA carried by these insects. Staphylinid beetles rarely contained fungal DNA, while Endomychus coccineus, Glischrochilus hortensis and Glischrochilus quadripunctatus frequently carried fungal DNA with a composition specific to the insect taxon. A large proportion of the obtained fungal sequences (34%) represented decomposer fungi, including well-known wood-decay fungi such as Fomitopsis pinicola, Fomes fomentarius, Trichaptum abietinum and Trametes versicolor. Scanning electron microscopy further showed that some of the fungal material was carried as spores or yeast cells on the insect exoskeletons. Our results suggest that insect-vectored dispersal is of broader importance to wood-inhabiting fungi than previously assumed.
Data from: Tropical shift in decomposers' relative contribution to leaf litter breakdown in two Guinean streams
The hypothesis that leaf litter breakdown in Guinean streams is governed by microorganisms was confirmed, supporting the reported latitudinal shift in decomposers' contribution to this process. The large body size of dominant macroinvertebrate decomposers (shrimps) only partially compensated for their very low densities. In contrast with other tropical regions mostly dominated by insect larvae, the functional consequences of global warming on these stream ecosystems may be less severe due to the lower sensitivity of crustaceans to temperature increase.
Substrate quality drives fungal necromass decay and decomposer community structure under contrasting vegetation types
<p>1. Fungal mycelium is increasingly recognized as a central component of soil biogeochemical cycling, yet our current understanding of the ecological controls on fungal necromass decomposition is limited to single sites and vegetation types.</p> <p>2. By deploying common fungal necromass substrates in a temperate oak savannah and hardwood forest in the midwestern USA, we assessed the generality of the rate at which high- and low-quality fungal necromass decomposes; further, we investigated how the decomposer 'necrobiome' varies both across and within sites under vegetation types dominated by either arbuscular (AM) or ectomycorrhizal (EM) plants.</p> <p>3. The effects of necromass quality on decay rate were robust to site and vegetation type differences, with high-quality fungal necromass decomposing, on average, 2.5 times faster during the initial stages of decay. Across vegetation types, bacterial and fungal communities present on decaying necromass differed from bulk soil microbial communities and were influenced by necromass quality. Moulds, yeasts and copiotrophic bacteria consistently dominated the necrobiome of high-quality fungal substrates.</p> <p>4. Synthesis: We show that regardless of differences in decay environments, high-quality fungal substrates decompose faster and support different types of decomposer microorganisms when compared with low-quality fungal tissues. These findings help to refine our theoretical understanding of the dominant factors affecting fast cycling components of soil organic matter (SOM) and the microbial communities associated with rapid decay.</p>
Data from: Leaf litter diversity and structure of microbial decomposer communities modulate litter decomposition in aquatic systems
1. Leaf litter decomposition is a major ecosystem process that can link aquatic to terrestrial ecosystems by flows of nutrients. Biodiversity and ecosystem functioning research hypothesizes that the global loss of species leads to impaired decomposition rates and thus to slower recycling of nutrients. Especially in aquatic systems an understanding of diversity effects on litter decomposition is still incomplete. 2. Here we conducted an experiment to test two main factors associated with global species loss that might influence leaf litter decomposition. Firstly, we tested whether mixing different leaf species alters litter decomposition rates compared to decomposition of these species in monoculture. Secondly, we tested the effect of the size structure of a lotic decomposer community on decomposition rates. 3. Overall, leaf litter identity strongly affected decomposition rates, and the observed decomposition rates matched measures of metabolic activity and microbial abundances. While we found some evidence of a positive leaf litter diversity effect on decomposition, this effect was not coherent across all litter combinations and the effect was generally additive and not synergistic. 4. Microbial communities, with a reduced functional and trophic complexity, showed a small but significant overall reduction in decomposition rates compared to communities with the naturally complete functional and trophic complexity, highlighting the importance of a complete microbial community on ecosystem functioning. 5. Our results suggest that top-down diversity effects of the decomposer community on litter decomposition in aquatic systems are of comparable importance as bottom-up diversity effects of primary producers.
Data from: Melanization of mycorrhizal fungal necromass structures microbial decomposer communities
Mycorrhizal fungal necromass is increasingly recognized as an important contributor to soil organic carbon pools, particularly in forest ecosystems. While its decomposition rate is primarily determined by biochemical composition, how traits such as melanin content affect the structure of necromass decomposer communities remains poorly understood. To assess the role of biochemical traits on microbial decomposer community composition and functioning, we incubated melanized and non-melanized necromass of the mycorrhizal fungus Meliniomyces bicolor in Pinus- and Quercus-dominated forests in Minnesota, USA and then assessed the associated fungal and bacterial decomposer communities after 1, 2 and 3 months using high-throughput sequencing. Melanized necromass decomposed significantly slower than non-melanized necromass in both forests. The structure of the microbial decomposer communities depended significantly on necromass melanin content, although the effect was stronger for fungi than bacteria. On non-melanized necromass, fungal communities were dominated by r-selected ascomycete and mucoromycete microfungi early and then replaced by basidiomycete ectomycorrhizal fungi, while on melanized necromass these groups were co-dominant throughout the incubation. Bacterial communities were dominated by both specialist mycophageous and generalist taxa. Synthesis. Our results indicate that necromass biochemistry not only strongly affects rates of decomposition but also the structure of the associated decomposer communities. Furthermore, the observed colonization patterns suggest that fungi, and particularly ectomycorrhizal fungi, may play a more important role in necromass decomposition than previously recognized.
Data from: Plant interactions as biotic drivers of plasticity in leaf litter traits and decomposability of Quercus petraea
The importance of plant litter traits and decomposability for nutrient cycling processes and plant community dynamics through plant-litter-soil feedbacks has been largely emphasized. However, the role of biotic interactions as drivers of intraspecific variability in litter traits remains surprisingly little studied. In this study, we used a large-scale, multi-site network of long-term tree removal experiments manipulating the abundance of a foundation tree species, i.e. Quercus petraea, to assess how plant interactions control intraspecific variation in oak leaf litter traits and decomposability. We studied 19 plots across eight experimental sites covering a large gradient of oak abundance, stand age and local abiotic context. Oak leaf litter quality strongly declined with tree removal in early forest successional stage. Litter became poorer in nutrients such as N and Mg and richer in secondary metabolites such as lignin and condensed tannins. This in turn slowed its decomposition. Importantly, litter N loss switched from N release to N immobilization. Variance partitioning indicated that oak abundance explained as much variation in oak leaf litter traits as oak age and twice as much as soil inherent fertility. Confirmatory path analysis revealed that the decline of oak leaf litter quality induced by tree removal was most likely driven by a shift in understory plant species composition. Plasticity of oak leaf litter traits to the shortage of nutrient supply related to the development of understory plants competitors with higher nutrient capture and retention ability could potentially explain this response pattern. Our data also give consistent but weaker support that the decline of oak leaf litter quality could be driven by alleviated competition for light among canopy trees and subsequent enhanced crown exposure to light. Overall, our study provides evidence that biotic factors such as plant interactions are major drivers of plasticity in leaf litter traits and decomposability. This finding contributes to the emerging view that phenotypic plasticity is fundamentally related to biotic interactions for sessile organisms, especially for long-lived and large plant species such as trees. Taking this source of functional diversity into account could help us to better understand plant community dynamics and ecological processes in terrestrial ecosystems.
Data from: Are Cecropia trees ecosystem engineers? The effect of decomposing Cecropia leaves on arthropod communities
Ecosystem engineers structure species richness and the composition of biological communities. Although several studies have uncovered the importance of engineering environments, few studies have evaluated the effect of pioneering plants as ecosystem engineers, especially in tropical environments. When dead, Cecropia leaves become architecturally complex, acquiring a tridimensional shape due to desiccation, and may facilitate other organisms. Here we evaluate the role of these dead leaves in structuring species richness, abundance, biomass, and composition of macroinvertebrate communities on leaf litter in six protected areas of Brazilian Atlantic Rainforest. Predators were larger, more abundant, and presented higher standing stock in the presence of dead Cecropia leaves compared to soil debris (i.e., common leaf litter); however, detritivores had the opposite patterns. This resulted in shifts in body size structure of the assemblage, thus causing inversion of biomass pyramids to top-heavy in advanced stages of Cecropia leaves desiccation. Dead Cecropia leaves did not influence species richness and abundance of species, but they influenced the biomass of detritivores and predators in the communities. Our results demonstrated that pioneer trees can act as ecosystem engineers, by facilitating communities of invertebrate predators. In addition, our results suggest that the presence of Cecropia leaves can mediate trophic interactions and shape food web structure on the forest floor.
Fig. 1 in Who Steals the Eggs? Coprophanaeus Telamon (Erichson) Buries Decomposing Eggs in Western Amazonian Rain Forest (Coleoptera: Scarabaeidae)
Fig. 1. Superficial traces of burying activity of Coprophanaeus telamon telamon (Erichson) directly at a ''nest.'' At other places, burial traces were much less conspicuous.
Data Set For GGA24 a non-decomposable approximation for a non-additive kinetic potential
<p>Funding: National Science Center of Poland under grants no. 2023/07/X/ST4/01357 MINIATURA7.</p>
Efficient implementation of molecular CCSD gradients with Cholesky-decomposed electron repulsion integrals
<p>Initial and optimized geometries from the manuscript "Efficient implementation of molecular CCSD gradients with Cholesky-decomposed electron repulsion integrals"</p>
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