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86
datasets available to search
ShareScore release 0.9.0
Dataset results
86 results for “Loop extrusion”
Transcription processes compete with loop extrusion to homogenize promoter and enhancer dynamics
GEO Series GSE230243. Mus musculus musculus x Mus musculus castaneus. 13 samples. Type: Other.
CTCF couples long-range loop extrusion and diffusion to mediate a diverse Igk repertoire [HTGTS-VDJ-Seq]
GEO Series GSE287940. Mus musculus. 34 samples. Type: Other.
Characterization of induced cohesin loop extrusion trajectories in living cells
GEO Series GSE218803. Homo sapiens. 179 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Cohesin-dependent chromosome loop extrusion is limited by transcription and stalled replication forks
GEO Series GSE162194. Saccharomyces cerevisiae. 50 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
The cellular balance of NIPBL and PDS5 tunes the rate of cohesin loop extrusion and shapes chromosome organization across scales [HiC]
GEO Series GSE279296. Mus musculus. 33 samples. Type: Other.
Nuclear Morphology is Instructed by the Loop Extrusion Program [ChIP-Seq]
GEO Series GSE235645. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Heterochromatin diversity modulates genome compartmentalization and loop extrusion barriers [ChIP-seq]
GEO Series GSE182104. Homo sapiens. 38 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Characterization of induced cohesin loop extrusion trajectories in living cells [ChIP-seq]
GEO Series GSE277608. Homo sapiens. 147 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching [3C-HTGTS]
GEO Series GSE130263. Mus musculus. 75 samples. Type: Genome variation profiling by high throughput sequencing.
Cohesin-mediated DNA loop extrusion resolves sister chromatids in G2 phase
GEO Series GSE227694. Homo sapiens. 31 samples. Type: Other.
Regulation of cohesin loop extrusion underlies changes in enhancer-promoter interactions during pancreatic cell differentiation (Hi-ChIP)
GEO Series GSE210525. Homo sapiens. 78 samples. Type: Other.
Chromatin Fiber Folding Represses Transcription and Loop Extrusion in Quiescent Cells
GEO Series GSE167020. Saccharomyces cerevisiae. 88 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Identification of two subsets of subcompartment A1 associated with high transcriptional activity and frequent loop extrusion
GEO Series GSE227868. Homo sapiens. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Characterization of induced cohesin loop extrusion trajectories in living cells [Hi-C]
GEO Series GSE281421. Homo sapiens. 3 samples. Type: Other.
Convergent gene pairs restrict chromatin looping in Dictyostelium discoideum, acting as directional barriers for extrusion
GEO Series GSE247397. Dictyostelium discoideum. 16 samples. Type: Expression profiling by high throughput sequencing; Other.
Cohesin-dependent chromosome loop extrusion is limited by transcription and stalled replication forks [ChIP-seq]
GEO Series GSE161522. Saccharomyces cerevisiae. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Chromatin jets define the properties of cohesin-driven in vivo loop extrusion
GEO Series GSE199059. Mus musculus. 15 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching [ChIP-Seq]
GEO Series GSE130264. Mus musculus. 31 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching [GRO-Seq]
GEO Series GSE130266. Mus musculus. 22 samples. Type: Expression profiling by high throughput sequencing; Other.
Heterochromatin diversity modulates genome compartmentalization and loop extrusion barriers.
GEO Series GSE182108. Homo sapiens. 58 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.