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182 results for “MSS”
FIGURE 1 in The hypogean Iberian genus Typhlopsychrosoma Mauriès, 1982 (Diplopoda, Chordeumatida, Vandeleumatidae): distribution map, key to species, first record in a Mesovoid Shallow Substratum (MSS) and detailed iconography of T. baeticaense (Mauriès, 2013)
FIGURE 1. Distribution map of the genus Typhlopsychrosoma and pictures from the site where T. baeticaense appeared in the MSS. A) Map of the Iberian Peninsula; scale bar 200 km and B) Map of Alicante region; Scale bar 20 km. The white stars correspond to the new localities of T. baeticaense: 1) MSS, Sierra de Aitana, Confrides, Alicante province; 2) MSS, Bernia Mountains, Xaló, Alicante province. White diamonds correspond to previous records of T. baeticaense: 3) Cueva de los Murciélagos, Zuheros, Córdoba province; 4) Cueva de las Golondrinas, Carcabuey, Córdoba province; 5) Cueva del Nacimiento de San Blás, Siles, Jaén province; 6) Complejo del Arroyo de la Rambla, PB-4, Peal de Becerro, Jaén province. White squares correspond to the localities of T. tarraconense: 7) Cova Cambra, Tortosa, Tarragona province; 8) Cova de Yerret, Alfara, Tortosa, Tarragona province; 9) Cova de Rabosa, Perelló, Tarragona province. Black circle with white margin corresponds to T. breuili: 10) Cueva Mayor, Atapuerca cave system, Ibeas de Juarros, Burgos. White circles correspond to the localities of T. fadriquei: 11) Cueva del Oro, Cornión, Asturias province; 12) Pozu Palomeru, Cornión, Asturias province; 13) Hoya la Madre Cave, ravine of Casaro River, 5 km from Lago Ercina, Picos del Cornión, Belbin, Asturias province; 14) Cueva de la Marniosa, Sobra Valley, Tresviso, Asturias province. C) Bare scree in Aitana Mountains where the MSS was sampled. D) Process of installation of the PVC cylinder. E) Aspect of the PVC cylinder once buried, and pitfall trap with the propylene glycol and the bait.
FIGURE 7 in On the genus Aphaobius Abeille de Perrin, 1878, with description of a new species from the mesovoid shallow substratum (MSS) of Austria (Coleoptera: Leiodidae: Cholevinae: Leptodirini)
FIGURE 7. Calibrated phylogeny of the studied species obtained with BEAST, with the combined mitochondrial and nuclear data. Numbers in nodes, Bayesian posterior probabilities / ML bootstrap support.
FIGURE 6 in On the genus Aphaobius Abeille de Perrin, 1878, with description of a new species from the mesovoid shallow substratum (MSS) of Austria (Coleoptera: Leiodidae: Cholevinae: Leptodirini)
FIGURE 6. Distribution map of the genus Aphaobius in Austria and Slovenia. 1. A. kraussi; 2. A. brevicornis; 3. A. mixanigi; 4. A. haraldi sp. n.
FIGURE 5 in On the genus Aphaobius Abeille de Perrin, 1878, with description of a new species from the mesovoid shallow substratum (MSS) of Austria (Coleoptera: Leiodidae: Cholevinae: Leptodirini)
FIGURE 5. Aphaobius spp., aedeagus in dorsal and lateral views. A: Aphaobius haraldi sp. n.; B: A. mixanigi; C: A. brevicornis; D: A. kraussi; E: A. knirschi; F: A. angusticollis.
FIGURE 4 in On the genus Aphaobius Abeille de Perrin, 1878, with description of a new species from the mesovoid shallow substratum (MSS) of Austria (Coleoptera: Leiodidae: Cholevinae: Leptodirini)
FIGURE 4. Aphaobius spp., antennae (males). A: Aphaobius haraldi sp. n.; B: A. mixanigi; C: A. brevicornis; D: A. kraussi; E: A. knirschi; F: A. angusticollis.
Case studies used in the test of the MCDA-MSS for energy systems analysis, described according to its 156 features
<p>Case studies used in the test of the MCDA-MSS, described according to its 156 features.</p>
FIGURE 5 in A new genus and species of Haplobainosomatidae (Diplopoda: Chordeumatida) from the MSS of the Sierra de Guadarrama National Park, central Spain
FIGURE 5. Details of the morphology of Guadarramasoma ramosae gen. & sp. nov. A) Head in lateral view. B) Head and collum in dorsal view. C) Collum in lateral view. D) Clypeus and gnathochilarium in ventral view. E) Antenna in lateral view, first antennomere missing. Scale bars: A = 0.3 mm; B–D = 0.2 mm; E = 0.5 mm.
FIGURE 8 in A new genus and species of Haplobainosomatidae (Diplopoda: Chordeumatida) from the MSS of the Sierra de Guadarrama National Park, central Spain
FIGURE 8. Details of the gonopods of Guadarramasoma ramosae gen. & sp. nov. A) Anterior gonopods in anterior view. B) Anterior gonopods in posterolateral view. C) Anterior gonopods in posterolateral view. D) Detail of the anterior gonopods in posterior view. E) Tip of telopodite. F) Posterior gonopod (paragonopod) in posterior view. G) Ventral view of male bearing gonopods in its natural position. H) Lateral image of male bearing gonopods in place. Scale bars: A–C, H = 0.5 mm; D, F = 0.2 mm; E = 0.1 mm; G = 0.3 mm. Abbreviations: T, telopodites; tb, basal part of telopodites; ti, tip of telopodite; A, synangiocoxite; a1, anterior lobe of synangiocoxite; a2, vestigial wart-like structure possibly corresponding to median lobe of synangiocoxite; a3, posterior structures of synangiocoxite; K, colpocoxite.
FIGURE 1 in A new genus and species of Haplobainosomatidae (Diplopoda: Chordeumatida) from the MSS of the Sierra de Guadarrama National Park, central Spain
FIGURE 1. Distribution of Guadarramasoma ramosae gen. & sp. nov. in the Sierra de Guadarrama National Park. The red circles correspond to the sampling points where it was captured, and the size of the circles is related to the number of specimens captured. The yellow circles correspond to the sampling points where the species has not been captured. The inner area of the map corresponds to the limits of the National Park, and the surrounding area to the buffer zone ("Peripheral Protection Area").
FIGURE 4 in A new genus and species of Haplobainosomatidae (Diplopoda: Chordeumatida) from the MSS of the Sierra de Guadarrama National Park, central Spain
FIGURE 4. Habitus of a male (A) and a female (B) of Guadarramasoma ramosae gen. & sp. nov. lateral view. Scale bar 2 mm.
FIGURE 3. A in A new genus and species of Haplobainosomatidae (Diplopoda: Chordeumatida) from the MSS of the Sierra de Guadarrama National Park, central Spain
FIGURE 3. A) Schema of an SSD and installed devices. Exterior view of the 0.5 m SSD (I). Exterior view of the 0.5 m SSD (II). Longitudinal section of PVC tube where the inside of the SSD is observed with the internal devices (pitfall trap and data logger) (III). Detail of the pitfall trap (IV). B) Photograph of a scree where the SSD-1 and SSD-1 (0.5m) were placed. C) Photograph of installed SSDs. Figure modified from Ortuño et al. (2013).
FIGURE 2 in A new genus and species of Haplobainosomatidae (Diplopoda: Chordeumatida) from the MSS of the Sierra de Guadarrama National Park, central Spain
FIGURE 2. Map of the Sierra de Guadarrama National Park, with the names of the mountain chains, divided by areas, and with the number and percentage of Guadarramasoma ramosae gen. & sp. nov. captured in each area, specimens of other Diplopoda captured in the same traps ("syntopic"), and specimens of other Diplopoda captured in different traps ("non syntopic").
FIGURE 10 in A new genus and species of Haplobainosomatidae (Diplopoda: Chordeumatida) from the MSS of the Sierra de Guadarrama National Park, central Spain
FIGURE 10. Schematic representation of the gonopods of at least one species per genus (but three Pyreneosoma species) of Haplobainosomatidae, modified from the drawings of Demange (1970), Mauriès (2010, 2015) and Mauriès & Vicente (1977). A) Guadarramasoma ramosae gen. & sp. nov. in anterior, right posterolateral and posterior view. B) Galicisoma biltoni Mauriès, 2015 in anterior, right lateral and posterior view. C) Haplobainosoma lusitanum Verhoeff, 1900 in anterior and posterior view (in the article of Demange -1970- only the tip of telopodite is represented in posterior view). D) Cantabrosoma serrai Mauriès & Vicente, 1977 in anterior, right lateral and posterior view. E) Pyreneosoma bessoni huescanus Mauriès, 2010 in anterior and right lateral view. F) P. consoranensis Mauriès 2010 in anterior, right lateral and posterior view. G) P. aranensis Mauriès, 2010 in anterior and right lateral view. H) Turdulisoma galiciense Mauriès, 2015 in anterior, right lateral and posterior view. Colours indicate provisional tentative hypothesis of homology based on names given to each structure in their descriptions and our observations: yellow = telopodites; blue = angiocoxites or synangiocoxite; red = colpocoxites; green =sternites; purple = tracheal pouch ("poche trachéenne" sensu Mauriès 2010).
FIGURE 7 in A new genus and species of Haplobainosomatidae (Diplopoda: Chordeumatida) from the MSS of the Sierra de Guadarrama National Park, central Spain
FIGURE 7. Details of the morphology of Guadarramasoma ramosae gen. & sp. nov. A) Sternal knobs and coxae of midsegments in ventral view. B) Leg 1. C) Leg 2. D) Leg 3. E) Leg 7. F) Leg 11. G) Detail of the tongue-shaped papillae of leg 3. H) Detail of the pores on the coxae of leg 11. Scale bars: A = 0.1 mm; B, C = 0.2 mm; D–F = 0.3 mm; G = 0.03 mm; H = 0.05 mm.
FIGURE 9 in A new genus and species of Haplobainosomatidae (Diplopoda: Chordeumatida) from the MSS of the Sierra de Guadarrama National Park, central Spain
FIGURE 9. Details of the anatomy of the female of Guadarramasoma ramosae gen. & sp. nov. A) Vulvae in posterior position. B) Left vulva in ventral position. C) Ventral view of an undissected female, showing the space between the second and the third leg where the vulvae are hidden. D) Detail of the coxa of the third pair of legs. Scale bars: A = 0.3 mm; B, C = 0.2 mm; D = 0.1 mm. Abbreviations: Op, operculum; vi, mesal valve; ve, lateral valve; ag, apodematic groove.
FIGURE 6 in A new genus and species of Haplobainosomatidae (Diplopoda: Chordeumatida) from the MSS of the Sierra de Guadarrama National Park, central Spain
FIGURE 6. Details of the morphology of Guadarramasoma ramosae gen. & sp. nov. A) Pleurotergites in lateral view. B) Trunk pleurotergites in dorsal view. C) Telson in laterodorsal view. D) Telson in ventral view. E) Telson in dorsal view. F) Telson in posterior view. Scale bars: A, B = 0.5 mm; C = 0.3 mm; D–F = 0.2 mm.
The initial assessment of ionospheric radio occultation data of MSS-1 satellite and its applications in scintillation exploration
<p>This dataset contains the GNSS data in the first three months of MSS-1 operation.</p> <p>The <em>.pdf files are level-2 radio occultation electron density files; </em>.csv are level-2 scintillation files.</p>
Histological images for MSI vs. MSS classification in gastrointestinal cancer, FFPE samples
<p>This repository contains 411,890 unique image patches derived from histological images of colorectal cancer and gastric cancer patients in the TCGA cohort (original whole slide SVS images are freely available at https://portal.gdc.cancer.gov/). All images in this repository are derived from formalin-fixed paraffin-embedded (FFPE) diagnostic slides ("DX" at the GDC data portal). This is explained well in this blog: http://www.andrewjanowczyk.com/download-tcga-digital-pathology-images-ffpe/</p> <p><strong>Preprocessing</strong></p> <p>All SVS slides were preprocessed as follows</p> <p>1. automatic detection of tumor</p> <p>2. resizing to 224 px x 224 px at a resolution of 0.5 µm/px</p> <p>4. color normalization with the Macenko method (Macenko et al., 2009, http://wwwx.cs.unc.edu/~mn/sites/default/files/macenko2009.pdf)</p> <p>5. assignment of patients to either "MSS" (microsatellite stable) or "MSIMUT" (microsatellite instable or highly mutated)</p> <p>6. randomization of patients to training and testing sets (~70% and ~30%). Randomization was done on a patient level rather than on a slide or tile level</p> <p>7. equilibration of training sets by undersampling (removing excess tiles in MSS class in a random way)</p> <p><strong>File description</strong></p> <p>1. STAD_TRAIN_MSS - training images (~70% of all patients) for gastric (stomach) cancer TCGA patients with MSS (microsatellite stable) tumors, 50285 unique image patches; FFPE samples</p> <p>2. STAD_TRAIN_MSIMUT - training images ( (~70% of all patients) for gastric (stomach) cancer TCGA patients with MSI (microsatellite instable) or highly mutated tumors, 50285 unique image patches; FFPE samples</p> <p>3. STAD_TEST_MSS - test images (~30% of all patients) for gastric (stomach) cancer TCGA patients with MSS (microsatellite stable) tumors, 90104 unique image patches; FFPE samples</p> <p>4. STAD_TEST_MSIMUT - test images ( ~30% of all patients) for gastric (stomach) cancer TCGA patients with MSI (microsatellite instable) or highly mutated tumors, 27904 unique image patches; FFPE samples</p> <p>5. CRC_DX_TEST_MSIMUT - test images (~30% of all patients) for colorectal cancer TCGA patients with MSI (microsatellite instable) or highly mutated tumors, 29335 unique image patches; FFPE samples</p> <p>6. CRC_DX_TEST_MSS - test images (~30% of all patients) for colorectal cancer TCGA patients with MSS (microsatellite stable) tumors, 70569 unique image patches; FFPE samples</p> <p>7. CRC_DX_TRAIN_MSIMUT - training images (~70% of all patients) for colorectal cancer TCGA patients with MSI (microsatellite instable) or highly mutated tumors, 46704 unique image patches; FFPE samples</p> <p>8. CRC_DX_TRAIN_MSS - training images (~70% of all patients) for colorectal cancer TCGA patients with MSS (microsatellite stable) tumors, 46704 unique image patches; FFPE samples</p>
Histological images for MSI vs. MSS classification in gastrointestinal cancer, snap-frozen samples
<p>This repository contains 218,578 unique image patches derived from histological images of colorectal cancer patients in the TCGA cohort (original whole slide SVS images are freely available at https://portal.gdc.cancer.gov/). All images in this repository are derived from snap-frozen tissue slides ("TS" or "BS" at the GDC data portal).</p> <p><strong>Preprocessing</strong></p> <p>All SVS slides were preprocessed as follows</p> <p>1. automatic detection of tumor</p> <p>2. resizing to 224 px x 224 px at a resolution of 0.5 µm/px</p> <p>4. color normalization with the Macenko method (Macenko et al., 2009, http://wwwx.cs.unc.edu/~mn/sites/default/files/macenko2009.pdf)</p> <p>5. assignment of patients to either "MSS" (microsatellite stable) or "MSIMUT" (microsatellite unstable or hypermutated)</p> <p>6. randomization of patients to training and testing sets (~70% and ~30%). Randomization was done on a patient level rather than on a slide or tile level</p> <p>7. equilibration of training sets by undersampling (removing excess tiles in MSS class in a random way)</p> <p><strong>File description</strong></p> <p>1. STAD_TRAIN_MSS - training images (~70% of all patients) for gastric (stomach) cancer TCGA patients with MSS (microsatellite stable) tumors, 50285 unique image patches; FFPE samples</p> <p>2. STAD_TRAIN_MSIMUT - training images ( (~70% of all patients) for gastric (stomach) cancer TCGA patients with MSI (microsatellite instable) or highly mutated tumors, 50285 unique image patches; FFPE samples</p> <p>3. STAD_TEST_MSS - test images (~30% of all patients) for gastric (stomach) cancer TCGA patients with MSS (microsatellite stable) tumors, 90104 unique image patches; FFPE samples</p> <p>4. STAD_TEST_MSIMUT - test images ( ~30% of all patients) for gastric (stomach) cancer TCGA patients with MSI (microsatellite instable) or highly mutated tumors, 27904 unique image patches; FFPE samples</p>
Supplementary material 4 from: Eusébio RP, Fonseca PE, Rebelo R, Mathias ML, Reboleira ASPS (2023) How to map potential mesovoid shallow substratum (MSS) habitats? A case study in colluvial MSS. Subterranean Biology 45: 141-156. https://doi.org/10.3897/subtbiol.45.96332
Abundance of invertebrates collected in colluvial Mesovoid Shallow Substratum (MSS) at the Arrábida National Park
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