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132 results for “Multi-gene”
FIGURE 3 in A new species of Coccomyces on Cunninghamia lanceolata and its phylogenetic placement based on multi-gene analysis
FIGURE 3. Coccomyces anhuiensis (Holotype, BJTC 201610): A. Ascoma in median vertical section; B. Detailed structure of an ascoma in vertical section; C. Paraphyses, discharged ascospores, mature asci with ascospores, and an empty ascus after ascospore discharged. D. Conidiomata in median vertical section.
FIGURE 2 in A new species of Coccomyces on Cunninghamia lanceolata and its phylogenetic placement based on multi-gene analysis
FIGURE 2. Coccomyces anhuiensis (Holotype, BJTC 201610) on Cunninghamia lanceolata: A. Ascomata on nature substrate; B. Mature ascoma observed under a dissecting microscope; C. Immature ascomata.
FIGURE 7 in Combined multi-gene backbone tree for the genus Coniochaeta with two new species from Uzbekistan
FIGURE 7. Coniochaeta coluteae (from isotype culture MFLUCC 17-2299) a. Culture on MEA from above after 4 weeks. b. Culture on MEA from below after 4 weeks. c, d. Hyphal strands on the culture. e–j. Conidiogenous cells on hyphal cells (arrow heads: conidiogenesis). k. Conidia. Scale bars: c,d=200 μm, e–k=5 μm.
FIGURE 6 in Combined multi-gene backbone tree for the genus Coniochaeta with two new species from Uzbekistan
FIGURE 6. Coniochaeta coluteae (holotype TASM 6104) a, b. Ascomata on the substrate. c, d. Vertical section of ascoma. e, f. Ostiole. g. Section of peridium (in water). h. Section of peridium (in 5% KOH). i. Paraphyses. j. Ascus apex in Congo Red. k. Ascospores. l–n. Asci (arrowheads show germ slits in n). Scale bars: a=500 μm, b=200 μm, c=100 μm, d=50 μm, e, f=20 μm, g–i, l–n=10 μm, j, k=5 μm.
FIGURE 3 in Combined multi-gene backbone tree for the genus Coniochaeta with two new species from Uzbekistan
FIGURE 3. Results of the PHI test of closely related species (a C. acaciae, b C. coluteae) using both LogDet transformation and splits decomposition. New species described in this study are indicated in red, type strains are in boldface.
FIGURE 5 in Combined multi-gene backbone tree for the genus Coniochaeta with two new species from Uzbekistan
FIGURE 5. Coniochaeta acaciae (from isotype culture MFLUCC 17-2298) a. Culture on MEA from above after 4 weeks. b. Culture on MEA from below after 4 weeks. c. Hyphal strands on the culture. d–i. Conidiogenous cells on hyphal cells. j. Conidia. Scale bars: c=200 μm, d–j=5 μm.
FIGURE 4 in Combined multi-gene backbone tree for the genus Coniochaeta with two new species from Uzbekistan
FIGURE 4. Coniochaeta acaciae (holotype TASM 6103) a, b. Ascomata on the substrate. c, d. Vertical section of ascoma. e. Section of peridium (in water). f. Section of peridium (in 5% KOH). g. Ostiole. h. Setae. i. Ascus apex in Congo Red. j–l. Ascospores (arrow heads show germ slits in l). m–o. Asci. Scale bars: a=500 μm, b=200 μm, c,d=100 μm, e–h=20 μm, i=10 μm, j–o=5 μm.
FIGURE 1 in Combined multi-gene backbone tree for the genus Coniochaeta with two new species from Uzbekistan
FIGURE 1. Maximum likelihood tree revealed by RAxML from an analysis of the LSU rDNA matrix of Coniochaeta, showing the phylogenetic position of C. acaciae and C. coluteae. MP, ML bootstrap supports (≥50%) and Bayesian posterior probabilities (≥0.9PP) support are given above or below the branches respectively. The tree was rooted with Chaetosphaeria garethjonesii (MFLUCC 15-1012) and C. jonesii (MFLUCC 15-1015). New species proposed in this study are indicated in red, and type strains are in boldface.
FIGURE 2 in Morphology and multi-gene phylogeny reveal a new Brunneofusispora species from coffee in Yunnan Province, China
FIGURE 2. Brunneofusispora baoshanensis (ZHKU 23-0077, holotype). a, b. Ascomata on the host substrate. c. Vertical section through an ascoma. d. Ostiole. e. Peridium. f Hamathecium. g–k. Asci. l–o. Ascospores (l shows an ascospore with mucilaginous sheath). p. An ascospore in India ink. q. Germinating ascospore. r. Colony on PDA (above and below). Scale bars: b, c = 100 μm, d = 50 μm, e–k, q = 20 μm, l–p = 10 μm.
FIGURE 1 in Morphology and multi-gene phylogeny reveal a new Brunneofusispora species from coffee in Yunnan Province, China
FIGURE 1. RAxML tree based on a combined dataset of SSU, ITS, LSU, RPB2, and TEF1-α partial sequences. Bootstrap support values for maximum likelihood (ML) equal to or higher than 60% and Bayesian probability (BYPP) equal to or higher than 0.90 are mentioned above the branches (ML/BI). Newly generated sequences are shown in red. Type strains are denoted with T.
FIGURE 9 in Multi-gene analysis of Pseudocercospora spp. from Iran
FIGURE 9. Pseudocercospora sp. B. a–b. Leaf spots. c–d. Fasciculate conidiophores. e–g. Conidia. Scale bars = 10 µm.
FIGURE 10. Pseudocercospora vitis. a in Multi-gene analysis of Pseudocercospora spp. from Iran
FIGURE 10. Pseudocercospora vitis. a. Leaf spots on upper and lower leaf surface. b, c. Synnematal fascicles with conidiophores and conidiogenous cells. d–g. Conidia. Scale bars = 10 µm.
FIGURE 8 in Multi-gene analysis of Pseudocercospora spp. from Iran
FIGURE 8. Pseudocercospora sp. A. a. Leaf spots. b–e. Fasciculate conidiophores with some conidiophores reduced to conidiogenous cells. f–j. Conidia. Scale bars = 10 µm.
FIGURE 4. Pseudocercospora mazandaranensis. a. Leaf spots. b in Multi-gene analysis of Pseudocercospora spp. from Iran
FIGURE 4. Pseudocercospora mazandaranensis. a. Leaf spots. b. Close-up of leaf spot with fruiting. c–d. Fasciculate conidiophores. e. Branched conidiophores. f–i. Conidia. Scale bars = 10 µm.
FIGURE 7. Pseudocercospora sophoricola. a. Leaf spots. b. Globular stromata. c–e in Multi-gene analysis of Pseudocercospora spp. from Iran
FIGURE 7. Pseudocercospora sophoricola. a. Leaf spots. b. Globular stromata. c–e. Fasciculate conidiophores reduced to conidiogenous cells. f–l. Conidia. Scale bars = 10 µm.
FIGURE 6. Pseudocercospora punicae. a, b. Leaf spots. c. Fruit spot. d–f. Fasciculate conidiophores. g–i in Multi-gene analysis of Pseudocercospora spp. from Iran
FIGURE 6. Pseudocercospora punicae. a, b. Leaf spots. c. Fruit spot. d–f. Fasciculate conidiophores. g–i. Conidia. Scale bars = 10 µm.
FIGURE 3. Pseudocercospora atromarginalis. a in Multi-gene analysis of Pseudocercospora spp. from Iran
FIGURE 3. Pseudocercospora atromarginalis. a. Leaf spots on upper and lower leaf surface. b–c. Fasciculate conidiophores. d–g. Conidia. Scale bars = 10 µm.
FIGURE 5. Pseudocercospora norchiensis. a. Leaf spots. b–c. Fasciculate conidiophores. d–g in Multi-gene analysis of Pseudocercospora spp. from Iran
FIGURE 5. Pseudocercospora norchiensis. a. Leaf spots. b–c. Fasciculate conidiophores. d–g. Conidia. Scale bars = 10 µm.
FIGURE 2. A in Multi-gene analysis of Pseudocercospora spp. from Iran
FIGURE 2. A Bayesian inference phylogenetic tree of 59 isolates of Pseudocercospora. The tree was built using concatenated sequences of the ITS, ACT and TEF1-α loci, each with a separate model of DNA evolution. Species clades from Iran are indicated in green coloured blocks and species names in black text. Culture accession numbers are listed along with host plant (orange text) and place of origin (dark blue text). The tree was rooted to Passalora eucalypti (CBS 111318). Bayesian posterior probabilities ≥ 0.95 are indicated with colourcoded branches and scale bar indicates number of expected changes per site.
FIGURE 1 in Multi-gene analysis of Pseudocercospora spp. from Iran
FIGURE 1. Consensus phylogram (50 % majority rule) of 2 002 trees resulting from a Bayesian analysis of LSU sequence alignment using MrBayes v.3.2.1. The scale bar indicates 0.1 expected changes per site. Hosts and place of origin of the isolates in this study are indicated in orange and dark blue text, respectively. The tree was rooted to Cladosporium herbarum (GenBank accession DQ678074).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.