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70 results for “OTUs”
Subspecies and Distribution. C.s.siculaG.S.Miller,1901—SicilyandUsticaI,Italy. C.s.aegatensisHutterer,1991—EgadiIs(Favignana,Levanzo,andMarettimo),Italy. C. s. calypso Hutterer, 1991 — Gozo and possibly Comino Is (records from northern long-eared owl, Asio otus, pellets), Malta. Population on Malta I may also be referred to this subspecies, but probably extinct. in Soricidae
Subspecies and Distribution. C.s.siculaG.S.Miller,1901—SicilyandUsticaI,Italy. C.s.aegatensisHutterer,1991—EgadiIs(Favignana,Levanzo,andMarettimo),Italy. C. s. calypso Hutterer, 1991 — Gozo and possibly Comino Is (records from northern long-eared owl, Asio otus, pellets), Malta. Population on Malta I may also be referred to this subspecies, but probably extinct.
text-fig. 6. Skull reconstructions of representatives of Cretaceous OTUs in left lateral view, a, abelisaurid Camotaurus sastrei, Late Cretaceous (Campanian), Gorro Frigio Formation, Argentina; based on Bonaparte et al. (1990) and MACN CH 894. b, composite skull of a generalized baryonychid; mainly based on Suchomimus tenerensis (MNN GDF 501, 503-506) and Irritator challenged (SMNS 58022), with some elements reconstructed after Baryonyx walkeri (BMNH R 9951). c, carcharodontosaurid Carcharodontosaurus sahariens, Late Cretaceous (Cenomanian), Kem Kem beds, Morocco; based on Sereno et al. (1996) and SGM-Din 1, unpreserved elements shaded. D, dromaeosaurid Velociraptor mongoliensis, Late Cretaceous (Campanian), Djadokhta Formation, Mongolia; based on Barsbold (1983), Barsbold and Osmólska (1999), and AMNH 6515. e, ornithomimosaur Dromiceiomimus brevitertius, Late Cretaceous (Maastrichtian), Horseshoe Canyon Formation, Alberta, Canada; redrawn from Russell (1972). F, oviraptorosaur Oviraptor philoceratops, Late Cretaceous (Campanian), Djadokhta Formation, Mongolia; redrawn from Barsbold et al. (1990). G, therizinosauroid Erlikosaurus andrewsi, Late Cretaceous (Cenomanian- Turonian), Baynshiren Svita, Mongolia; based on Clark et al. (1994). H, tyrannosaurid Gorgosaurus libratus, Late Cretaceous (Campanian), Judith River Formation, Alberta, Canada, redrawn from Molnar et al. (1990). Abbreviations as in Text-figures 4 and 5, and: acc. op., accessory opening of unknown function in the premaxilla of Oviraptor (Barsbold et al. 1990); amf, anterior maxillary foramen; pn, pneumatic openings. Scale bars represent 50 mm (d-g) and 100 mm (a-c, h). in The interrelationships and evolution of basal theropod dinosaurs
text-fig. 6. Skull reconstructions of representatives of Cretaceous OTUs in left lateral view, a, abelisaurid Camotaurus sastrei, Late Cretaceous (Campanian), Gorro Frigio Formation, Argentina; based on Bonaparte et al. (1990) and MACN CH 894. b, composite skull of a generalized baryonychid; mainly based on Suchomimus tenerensis (MNN GDF 501, 503-506) and Irritator challenged (SMNS 58022), with some elements reconstructed after Baryonyx walkeri (BMNH R 9951). c, carcharodontosaurid Carcharodontosaurus sahariens, Late Cretaceous (Cenomanian), Kem Kem beds, Morocco; based on Sereno et al. (1996) and SGM-Din 1, unpreserved elements shaded. D, dromaeosaurid Velociraptor mongoliensis, Late Cretaceous (Campanian), Djadokhta Formation, Mongolia; based on Barsbold (1983), Barsbold and Osmólska (1999), and AMNH 6515. e, ornithomimosaur Dromiceiomimus brevitertius, Late Cretaceous (Maastrichtian), Horseshoe Canyon Formation, Alberta, Canada; redrawn from Russell (1972). F, oviraptorosaur Oviraptor philoceratops, Late Cretaceous (Campanian), Djadokhta Formation, Mongolia; redrawn from Barsbold et al. (1990). G, therizinosauroid Erlikosaurus andrewsi, Late Cretaceous (Cenomanian- Turonian), Baynshiren Svita, Mongolia; based on Clark et al. (1994). H, tyrannosaurid Gorgosaurus libratus, Late Cretaceous (Campanian), Judith River Formation, Alberta, Canada, redrawn from Molnar et al. (1990). Abbreviations as in Text-figures 4 and 5, and: acc. op., accessory opening of unknown function in the premaxilla of Oviraptor (Barsbold et al. 1990); amf, anterior maxillary foramen; pn, pneumatic openings. Scale bars represent 50 mm (d-g) and 100 mm (a-c, h).
text-fig. 5. Skull reconstructions of representatives of Jurassic OTUs in left lateral view, a, Dilophosaurus wetherilli, Early Jurassic (Sinemurian-Pliensbachian), Kayenta Formation, Arizona, USA; based on UCMP V 4214 and V 6468. B, Syntarsus rhodesiensis, Early Jurassic (Hettangian-Sinemurian), Forest Sandstone, Zimbabwe; composite reconstruction based on many isolated skull elements from the National Museum of Natural History in Harare (see Appendix), c, Magnosaurus oxoniensis, Middle Jurassic (Callovian), Oxford Clay, England; based on OUM J 13558, unpreserved elements shaded. D, Monolophosaurus jiangi, Middle Jurassic, Wucaiwan Formation, China; redrawn from Zhao and Currie (1993b). E, Allosaurus fragilis, Late Jurassic (Kimmeridgian-Tithonian), Morrison Formation, USA; based on MOR 693. f, basal bird Archaeopteryx sp., Late Jurassic (Tithonian), lithographic limestones of Solnhofen, Germany; based on Wellnhofer (1974), Elzanowski and Wellnhofer (1996), and the Berlin, Eichstätt, and Munich specimens. G, Ceratosaurus sp., Late Jurassic (Kimmeridgian-Tithonian), Morrison Formation, USA; based on USNM 4735 and UMNH VP 5278. H, Ornitholestes hermanni, Late Jurassic (Kimmeridgian-Tithonian), Morrison Formation, USA, based on AMNH 619. Abbreviations as in Text-figure 4, and: If, lacrimal fenestra; mf, maxillary fenestra; nf, nasal foramen; pmf, promaxillary fenestra. Scale bars represent 10 mm (b, f, h), 50 mm (c) and 100 mm (a, d, e, g). in The interrelationships and evolution of basal theropod dinosaurs
text-fig. 5. Skull reconstructions of representatives of Jurassic OTUs in left lateral view, a, Dilophosaurus wetherilli, Early Jurassic (Sinemurian-Pliensbachian), Kayenta Formation, Arizona, USA; based on UCMP V 4214 and V 6468. B, Syntarsus rhodesiensis, Early Jurassic (Hettangian-Sinemurian), Forest Sandstone, Zimbabwe; composite reconstruction based on many isolated skull elements from the National Museum of Natural History in Harare (see Appendix), c, Magnosaurus oxoniensis, Middle Jurassic (Callovian), Oxford Clay, England; based on OUM J 13558, unpreserved elements shaded. D, Monolophosaurus jiangi, Middle Jurassic, Wucaiwan Formation, China; redrawn from Zhao and Currie (1993b). E, Allosaurus fragilis, Late Jurassic (Kimmeridgian-Tithonian), Morrison Formation, USA; based on MOR 693. f, basal bird Archaeopteryx sp., Late Jurassic (Tithonian), lithographic limestones of Solnhofen, Germany; based on Wellnhofer (1974), Elzanowski and Wellnhofer (1996), and the Berlin, Eichstätt, and Munich specimens. G, Ceratosaurus sp., Late Jurassic (Kimmeridgian-Tithonian), Morrison Formation, USA; based on USNM 4735 and UMNH VP 5278. H, Ornitholestes hermanni, Late Jurassic (Kimmeridgian-Tithonian), Morrison Formation, USA, based on AMNH 619. Abbreviations as in Text-figure 4, and: If, lacrimal fenestra; mf, maxillary fenestra; nf, nasal foramen; pmf, promaxillary fenestra. Scale bars represent 10 mm (b, f, h), 50 mm (c) and 100 mm (a, d, e, g).
text-fig. 4. Skull reconstructions of representatives of riassic OTUs in left lateral view, a, Euparkeria capensis, Early Triassic (Scythian-Anisian), Beaufort Group, South Africa; redrawn from Ewer (1965). B, basal ornithischian Lesothosaurus diagnostics, Early Jurassic (Hettangian-Sinemurian), Elliot Formation, Lesotho; redrawn from Sereno (1991b). c, prosauropod sauropodomorph Plateosaurus sp., Late riassic (Norian), Knollenmergel, Germany; based on MB R. 1937. D, Eoraptor lunensis, Late Triassic (Camian), Ischigualasto Formation, Argentina; based on PVSJ 512. E, Herrerasaurus ischigualastensis, Late Triassic (Camian), Ischigualasto Formation, Argentina; redrawn from Sereno and Novas (1993). F, Coelophysis bauri, Late riassic (Norian), Chinle Formation, south-western USA; modified from Paul (1993). G, Lilienstemus lilienstemi, Late riassic (Norian), Knollenmergel, Germany; based on MB R. 2175, unpreserved elements shaded. H, Shuvosaurus inexpectatus, Late riassic (Norian), Dockum Group, Texas, USA; based on TU P 9280. Abbreviations: a, angular; aof, antorbital fenestra; d, dentary; emf, external mandibular fenestra; en, external nares; eo, exoccipital; f, frontal; itf, infratemporal fenestra; j, jugal; 1, lacrimal; m, maxilla; n, nasal; o, orbit; oc, occipital condyle; op, opisthotic; pa, parietal; pd, predentary; pm, premaxilla; pm-mf, premaxillary-maxillary fenestra; po, postorbital; pof, postfrontal; q, quadrate; qf, quadrate foramen; qj, quadratojugal; sa, surangular; saf, surangular foramen; snf, subnarial foramen; sob, supraorbital; soc, supraoccipital; sp, splenial; sq, squamosal; stf, supratemporal fenestra. Scale bars represent 10 mm (a-b) and 50 mm (c-H). in The interrelationships and evolution of basal theropod dinosaurs
text-fig. 4. Skull reconstructions of representatives of riassic OTUs in left lateral view, a, Euparkeria capensis, Early Triassic (Scythian-Anisian), Beaufort Group, South Africa; redrawn from Ewer (1965). B, basal ornithischian Lesothosaurus diagnostics, Early Jurassic (Hettangian-Sinemurian), Elliot Formation, Lesotho; redrawn from Sereno (1991b). c, prosauropod sauropodomorph Plateosaurus sp., Late riassic (Norian), Knollenmergel, Germany; based on MB R. 1937. D, Eoraptor lunensis, Late Triassic (Camian), Ischigualasto Formation, Argentina; based on PVSJ 512. E, Herrerasaurus ischigualastensis, Late Triassic (Camian), Ischigualasto Formation, Argentina; redrawn from Sereno and Novas (1993). F, Coelophysis bauri, Late riassic (Norian), Chinle Formation, south-western USA; modified from Paul (1993). G, Lilienstemus lilienstemi, Late riassic (Norian), Knollenmergel, Germany; based on MB R. 2175, unpreserved elements shaded. H, Shuvosaurus inexpectatus, Late riassic (Norian), Dockum Group, Texas, USA; based on TU P 9280. Abbreviations: a, angular; aof, antorbital fenestra; d, dentary; emf, external mandibular fenestra; en, external nares; eo, exoccipital; f, frontal; itf, infratemporal fenestra; j, jugal; 1, lacrimal; m, maxilla; n, nasal; o, orbit; oc, occipital condyle; op, opisthotic; pa, parietal; pd, predentary; pm, premaxilla; pm-mf, premaxillary-maxillary fenestra; po, postorbital; pof, postfrontal; q, quadrate; qf, quadrate foramen; qj, quadratojugal; sa, surangular; saf, surangular foramen; snf, subnarial foramen; sob, supraorbital; soc, supraoccipital; sp, splenial; sq, squamosal; stf, supratemporal fenestra. Scale bars represent 10 mm (a-b) and 50 mm (c-H).
Data from: Association of nesting <em>Otus scops</em> (Eurasian Scops Owl) with <em>Xerotyphlops vermicularis</em> (Worm snake) in Türkiye
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Cecal and colinic 16s rRNA sequencing OTUs
<p>The purpose of this study was to investigate the effects of Fermented Spent Mushroom Substrates (FSMS) on growth performance, serum biochemical, gut digestive enzyme activity, microbial community, genes expression of tight junction proteins and volatile fatty acids (VFA) in hindgut (colon and cecum) of weaned piglets. A total of 100 weaned Yihao native pigs (Native × Duroc, 50 males and 50 females) were allocated to two groups with five replicates and ten pigs per replicate. Pigs in the control group were fed a basal diet (BD group) and the others were fed basal diets supplemented with 3% FSMS (FSMS group). Relative to the BD Group, it had better results for Final weight, average daily gain (ADG) and feed conversion ratio (FCR) in FSMS Group but not significant (<i>p</i> > 0.05) which was accompanied by improved serum T3, IgG and IgA (<i>p</i> < 0.05) but lower serum TP, ALB, TC and TG during the overall period (<i>p</i> < 0.05). Similarly, FSMS significantly up-regulated (p < 0.05) the expression of Duodenal tight junction proteins such as pTJP1, pTJP2 and pOCLN. Meanwhile, Isobutyric acid, Valeric acid and Isovaleric acid levels were increased while Propanoic acid was decreased (<i>p</i> < 0.05) in the FSMS group than the BD group. In addition, the piglets in FSMS group changed the microbial diversity in the colon and cecum. 16S rRNA gene sequencing-based compositional analysis of the colonic and cecal microbiota showed differences in relative abundance of bacterial phyla (Firmicutes, Bacteroidetes etc.), genus (Lactobacillus, Streptococcus, Roseburia etc.) and species (Lactobacillus gasseri, Clostridium_disporicum etc.) between the BD and FSMS fed piglets. In conclusion, dietary supplementation with FSMS benefited to the intestinal mucosal barrier, immunity, and composition of microbiota.</p>
Supplementary material 7 from: Melo M, Freitas B, Verbelen P, da Costa SR, Pereira H, Fuchs J, Sangster G, Correia MN, de Lima RF, Crottini A (2022) A new species of scops-owl (Aves, Strigiformes, Strigidae, Otus) from Príncipe Island (Gulf of Guinea, Africa) and novel insights into the systematic affinities within Otus. ZooKeys 1126: 1-54. https://doi.org/10.3897/zookeys.1126.87635
Table S2. Details of song recordings
Supplementary material 9 from: Melo M, Freitas B, Verbelen P, da Costa SR, Pereira H, Fuchs J, Sangster G, Correia MN, de Lima RF, Crottini A (2022) A new species of scops-owl (Aves, Strigiformes, Strigidae, Otus) from Príncipe Island (Gulf of Guinea, Africa) and novel insights into the systematic affinities within Otus. ZooKeys 1126: 1-54. https://doi.org/10.3897/zookeys.1126.87635
Localities
Supplementary material 13 from: Melo M, Freitas B, Verbelen P, da Costa SR, Pereira H, Fuchs J, Sangster G, Correia MN, de Lima RF, Crottini A (2022) A new species of scops-owl (Aves, Strigiformes, Strigidae, Otus) from Príncipe Island (Gulf of Guinea, Africa) and novel insights into the systematic affinities within Otus. ZooKeys 1126: 1-54. https://doi.org/10.3897/zookeys.1126.87635
Table S7. PCA factor loadings of bioacoustic variables
Supplementary material 12 from: Melo M, Freitas B, Verbelen P, da Costa SR, Pereira H, Fuchs J, Sangster G, Correia MN, de Lima RF, Crottini A (2022) A new species of scops-owl (Aves, Strigiformes, Strigidae, Otus) from Príncipe Island (Gulf of Guinea, Africa) and novel insights into the systematic affinities within Otus. ZooKeys 1126: 1-54. https://doi.org/10.3897/zookeys.1126.87635
Table S6. Morphological differentiation
Supplementary material 3 from: Melo M, Freitas B, Verbelen P, da Costa SR, Pereira H, Fuchs J, Sangster G, Correia MN, de Lima RF, Crottini A (2022) A new species of scops-owl (Aves, Strigiformes, Strigidae, Otus) from Príncipe Island (Gulf of Guinea, Africa) and novel insights into the systematic affinities within Otus. ZooKeys 1126: 1-54. https://doi.org/10.3897/zookeys.1126.87635
Figure S1. Topography Owls
Supplementary material 15 from: Melo M, Freitas B, Verbelen P, da Costa SR, Pereira H, Fuchs J, Sangster G, Correia MN, de Lima RF, Crottini A (2022) A new species of scops-owl (Aves, Strigiformes, Strigidae, Otus) from Príncipe Island (Gulf of Guinea, Africa) and novel insights into the systematic affinities within Otus. ZooKeys 1126: 1-54. https://doi.org/10.3897/zookeys.1126.87635
Table S9. Phylogeny: sequence partition and evolution models
Supplementary material 8 from: Melo M, Freitas B, Verbelen P, da Costa SR, Pereira H, Fuchs J, Sangster G, Correia MN, de Lima RF, Crottini A (2022) A new species of scops-owl (Aves, Strigiformes, Strigidae, Otus) from Príncipe Island (Gulf of Guinea, Africa) and novel insights into the systematic affinities within Otus. ZooKeys 1126: 1-54. https://doi.org/10.3897/zookeys.1126.87635
Table S3. Song measurements
Supplementary material 2 from: Melo M, Freitas B, Verbelen P, da Costa SR, Pereira H, Fuchs J, Sangster G, Correia MN, de Lima RF, Crottini A (2022) A new species of scops-owl (Aves, Strigiformes, Strigidae, Otus) from Príncipe Island (Gulf of Guinea, Africa) and novel insights into the systematic affinities within Otus. ZooKeys 1126: 1-54. https://doi.org/10.3897/zookeys.1126.87635
Alignment
Supplementary material 11 from: Melo M, Freitas B, Verbelen P, da Costa SR, Pereira H, Fuchs J, Sangster G, Correia MN, de Lima RF, Crottini A (2022) A new species of scops-owl (Aves, Strigiformes, Strigidae, Otus) from Príncipe Island (Gulf of Guinea, Africa) and novel insights into the systematic affinities within Otus. ZooKeys 1126: 1-54. https://doi.org/10.3897/zookeys.1126.87635
Table S5. PCA factor loadings of morphological variables
Supplementary material 1 from: Melo M, Freitas B, Verbelen P, da Costa SR, Pereira H, Fuchs J, Sangster G, Correia MN, de Lima RF, Crottini A (2022) A new species of scops-owl (Aves, Strigiformes, Strigidae, Otus) from Príncipe Island (Gulf of Guinea, Africa) and novel insights into the systematic affinities within Otus. ZooKeys 1126: 1-54. https://doi.org/10.3897/zookeys.1126.87635
Timeline
Supplementary material 10 from: Melo M, Freitas B, Verbelen P, da Costa SR, Pereira H, Fuchs J, Sangster G, Correia MN, de Lima RF, Crottini A (2022) A new species of scops-owl (Aves, Strigiformes, Strigidae, Otus) from Príncipe Island (Gulf of Guinea, Africa) and novel insights into the systematic affinities within Otus. ZooKeys 1126: 1-54. https://doi.org/10.3897/zookeys.1126.87635
Table S4. Genomic regions, primers and amplification conditions
Relative abundance and number of bacterial OTUs of each bay and the identification
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Supplementary material to "Food and habitats requirements of the Scops Owl (Otus scops) in Switzerland revealed by very high-resolution multi-scale models"
<p><strong>Abstract</strong></p> <p>In Europe, agricultural practices have progressively evolved towards high productivity leading either to the intensification of productive and accessible areas or to the abandonment of less profitable sites. Both processes have led to the degradation of semi-natural habitats like extensive grasslands, threatening species such as the Eurasian Scops Owl <em>Otus scops</em> that rely on extensively managed agricultural landscapes. In this work, we aimed to assess the habitat preferences of the Scops Owl using habitat suitability models combined with a multi-scale approach. We generated a set of multi-scale predictors, considering both biotic and abiotic variables, built on two newly developed vegetation management and orthopteran abundance models. To select the variables to incorporate in a ‘best multi-scale model’, we chose the best spatial scale for each variable using univariate models and by calculating their relative importance through multi-model inference. Next, we built ensembles of small models (ESMs) at 10 different scales from 50 to 1000 m, and an additional model with each variable at its best scale (‘best multi-scale model’). The latter performed better than most of the other ESMs and allowed the creation of a high-resolution habitat suitability map for the species. Scops Owls showed a preference for dry sites with extensive and well-structured habitats with 30–40% bush cover, and relied strongly on semi-extensive grasslands covering at least 30% of the surface within 300 m of the territory centre and with high orthopteran availability near the centre (50-m radius), revealing a need for good foraging grounds near the nest. At a larger spatial scale within a radius of 1000 m, the habitat suitability of Scops Owls was negatively related to forest cover. The resulting ESM predictions provide valuable tools for conservation planning, highlighting sites in need of particular conservation efforts together with offering estimates of the percentage of habitat types and necessary prey abundance that could be used as targets in future management plans to ensure the persistence of the population.</p>
OTUs Table and fastq sequences from environmental DNA applied to trematode communities
<p>This OTUs table and fastq sequences underlie the main results of the study "Make visible the invisible: Optimized development of an environmental DNA metabarcoding tool for the characterization of trematode parasitic communities".</p> <p>In this study, our aim was to develop an optimized eDNA-based metabarcoding approach to detect trematodes and characterize their communities, most of which associated to aquatic environments. We thus assessed the ability of our eDNA-based metabarcoding approach to reconstruct trematode communities compared to a classical trematode monitoring method over four freshwater aquatic ecosystems. </p> <p>We focused on 4 natural sites from Occitanie Region (Southern France) that differ in terms of habitats, and in which the trematode communities were previously at least partially characterized. At each of these sites, we sampled the water-sediment interface from which the eDNA was extracted and sequenced with a MiSeq amplicons sequencing approach. <br> Over the four natural ecosystems screened in nature, 33 OTUs were generated from the eDNA-based approach, from which 11 trematode species were identified. In comparison, we identified five trematode species using the classical monitoring method, three of which were also detected by the eDNA-based approach.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.