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533 results for “Quality control”
Vesuvio cGNSS Network - Rinex data quality control (2020)
<p>For each cGNSS station, the file contains a summary report with information about Rinex observation data. For each day, the summary line shows the following information:</p><ol><li>cGNSS station name (Name),</li><li>the start time of the window, the time format is year (Y), month (M), day (D), hour and minutes (Hour), day of year (DOY), modified Julian date (M J Date) and GNSS week (Week),</li><li>the end time of the window, the time format is year (Y), month (M), day (D), hour and minutes (Hour), day of year (DOY), modified Julian date (M J Date), and GNSS week (Week),</li><li>the start and end times of the window (time format is year month day hour min),</li><li>window time laps (Hrs),</li><li>observation interval (OI),</li><li>the number of possible observations (#expt) above the elevation mask,</li><li>the number of complete observations (#obs),</li><li>the ratio of complete to possible observations as a percent (DCP),</li><li>the RMS "multipath combinations" values MP1 and MP2, in meters, limited by the elevation mask (MP1, MP2) rounded to two decimal points,</li><li>cycle slips (CS),</li><li>the ratio of complete observations to cycle slips (obs/CS).</li></ol><p>A full description of cGNSS network is reported in:<br>- De Martino P, Dolce M, Brandi G, Scarpato G, Tammaro U (2021). The Ground Deformation History of the Neapolitan Volcanic Area (Campi Flegrei Caldera, Somma–Vesuvius Volcano, and Ischia Island) from 20 Years of Continuous GPS Observations (2000–2019). Remote Sensing. 13(14):2725. doi:10.3390/rs13142725.</p><p>Please cite this when using the dataset</p>
Campi Flegrei cGNSS Network - Rinex data quality control (2020)
<p>For each cGNSS station, the file contains a summary report with information about Rinex observation data. For each day, the summary line shows the following information:</p><ol><li>cGNSS station name (Name),</li><li>the start time of the window, the time format is year (Y), month (M), day (D), hour and minutes (Hour), day of year (DOY), modified Julian date (M J Date) and GNSS week (Week),</li><li>the end time of the window, the time format is year (Y), month (M), day (D), hour and minutes (Hour), day of year (DOY), modified Julian date (M J Date), and GNSS week (Week),</li><li>the start and end times of the window (time format is year month day hour min),</li><li>window time laps (Hrs),</li><li>observation interval (OI),</li><li>the number of possible observations (#expt) above the elevation mask,</li><li>the number of complete observations (#obs),</li><li>the ratio of complete to possible observations as a percent (DCP),</li><li>the RMS "multipath combinations" values MP1 and MP2, in meters, limited by the elevation mask (MP1, MP2) rounded to two decimal points,</li><li>cycle slips (CS),</li><li>the ratio of complete observations to cycle slips (obs/CS).</li></ol><p>A full description of cGNSS network is reported in:<br>- De Martino P, Dolce M, Brandi G, Scarpato G, Tammaro U (2021). The Ground Deformation History of the Neapolitan Volcanic Area (Campi Flegrei Caldera, Somma–Vesuvius Volcano, and Ischia Island) from 20 Years of Continuous GPS Observations (2000–2019). Remote Sensing. 13(14):2725. doi:10.3390/rs13142725.</p><p>Please cite this when using the dataset</p>
NIOO-QingZ/Geertruidenberg_Mesocosms: Towards climate-robust water quality management: testing the efficacy of different eutrophication control measures during a heat
<p>Data and Codes used in the following open-access publication: </p> <p>https://www.sciencedirect.com/science/article/pii/S0048969722015145</p>
Diffusion MRI quality control reports for the BTC datasets
<p>Reports (HTML and pdf) of quality control on diffusion data on brain tumor patients before and after surgery, and controls, published at</p> <p>https://openneuro.org/datasets/ds001226 and https://openneuro.org/datasets/ds002080,</p> <p>based on Bastiani M, Cottaar M, Fitzgibbon SP, Suri S, Alfaro-Almagro F, Sotiropoulos SN, Jbabdi S, Andersson JLR. Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction. Neuroimage. 2019 Jan 1;184:801-812. doi: 10.1016/j.neuroimage.2018.09.073. Epub 2018 Sep 26. PMID: 30267859; PMCID: PMC6264528.</p>
Dataset accompanying the publication "Towards 3D determination of the surface roughness of core-shell microparticles as a routine quality control procedure by scanning electron microscopy"
<p>This dataset accompanies the following publication:</p> <p>Hülagü, D., Tobias, C., Dao, R., Komarov, P., Rurack, K., Hodoroaba, V.-D., Towards 3D determination of the surface roughness of core-shell microparticles as a routine quality control procedure by scanning electron microscopy. Sci.Rep, <span>14<span>, 17936 (2024), https://doi.org/10.1038/s41598-024-68797-7.</span></span></p> <p>It contains SEM and AFM-in-SEM images of polystyrene (PS) core particles, polystyrene-iron oxide (PS/Fe3O4) core-shell particles, and polystyrene-iron oxide-silica (PS/Fe3O4/SiO2) core-shell-shell particles. Please refer to the publication and its supporting information for more details on the acquisition and contents of the dataset, as well as the GitHub repository at https://github.Com/denizhulagu/roughness-analysis-by-electron-microscopy.</p> <p> </p> <p>The investigated particles were produced at BAM laboratories as previously described in:</p> <p>Hülagü, D. et al. Generalized analysis approach of the profile roughness by electron microscopy with the example of hierarchically grown polystyrene–iron oxide–silica core–shell–shell particles. Adv. Eng. Mater. 24, 2101344, https://doi.org/10.1002/adem.202101344 (2022).</p> <p>Tobias, C., Climent, E., Gawlitza, K. & Rurack, K. Polystyrene microparticles with convergently grown mesoporous silica shells as a promising tool for multiplexed bioanalytical assays. ACS Appl. Mater. Interfaces 13, 207, https://dx.doi.org/10.1021/acsami.0c17940 (2020).</p>
Gene expression of PFAS exposed human liver spheroids and quality control
<p>Per- and polyfluoroalkyl substances (PFAS) are a wide range of chemicals that are used in a variety of consumer and industrial products leading to direct human exposure. Many PFAS are chemically non-reactive and persistent in the environment, resulting in additional exposure from water, soil, and dietary intake. While some PFAS have documented negative health effects, data on simultaneous exposures to multiple PFAS (PFAS mixtures) are inadequate for making informed decisions for risk assessment. The current study leverages data from previous work in our group using Templated Oligo-Sequencing (TempO-Seq™) for high-throughput transcriptomic analysis of PFAS-exposed primary human liver cell spheroids; herein, we determine the transcriptomic potency of PFAS in mixtures. Gene expression data from single PFAS and mixture exposures of liver cell spheroids were subject to benchmark concentration (BMC) analysis. We used the 25<sup>th</sup> lowest gene BMC as the point of departure to compare the potencies of single PFAS to PFAS mixtures of varying complexity and composure. Specifically, the empirical potency of eight PFAS mixtures were compared to predicted mixture potencies calculated using the principal of concentration addition (i.e., dose addition) in which mixture component potencies are summed by proportion to predict mixture potency. In this study, for most mixtures, empirical mixture potencies were comparable to potencies calculated through concentration addition. This work supports that the effects of PFAS mixtures on gene expression largely follow the concentration addition predicted response and suggests that effects of these individual PFAS in mixtures are not strongly synergistic or antagonistic.</p>
Figure 3 in Quality control of the predatory mite Euseius scutalis (Acari: Phytoseiidae) againstTetranychus turkestani (Acari: Tetranychidae) over 30 generations of rearing on cattail pollen
Figure 3 Offspring sex ratio of females of Euseius scutalis fedTetranychus turkestani before (G0)
Figure 1 in Quality control of the predatory mite Euseius scutalis (Acari: Phytoseiidae) againstTetranychus turkestani (Acari: Tetranychidae) over 30 generations of rearing on cattail pollen
Figure 1 he age-stage survival rate (sxj) of Euseius scutalis fedTetranychus turkestani before (G0)
Fig. 1 in Quality Control Aspects in Relation to Rearing of Moths New rearing method and larval diet for the mahogany shoot borer Hypsipyla grandella (Lepidoptera: Pyralidae)
Fig. 1. Oviposition cage. The fan provides airflow through the cage.
CICE6 simulations: Quality Control for Community Based Sea Ice Model Development
<p>CICE6 simulations: Quality Control for Community Based Sea Ice Model Development<br> -----------------------------------------------------------------------------------</p> <p>Data from the CICE6 simulations by Elizabeth C. Hunke at Los Alamos National Laboratory described in the manuscript:</p> <p>Roberts, Hunke, Allard, Bailey, Craig, Lemieux and Turner (2018): Quality Control for Community Based Sea Ice Model Development.</p> <p>It was produced using the CICE sea ice model version 6.0.0.alpha with the baseline namelist:</p> <p>&setup_nml<br> days_per_year = 365<br> use_leap_years = .false.<br> year_init = 1990<br> istep0 = 0<br> dt = 3600.0<br> npt = 43800<br> ndtd = 1<br> runtype = 'continue'<br> ice_ic = '/usr/projects/climate/eclare/DATA/Consortium/CICE_data/ic/gx1/iced_gx1_v5.nc'<br> restart = .true.<br> restart_ext = .false.<br> use_restart_time = .true.<br> restart_format = 'nc'<br> lcdf64 = .false.<br> restart_dir = './restart/'<br> restart_file = 'iced'<br> pointer_file = './ice.restart_file'<br> dumpfreq = 'm'<br> dumpfreq_n = 1<br> dump_last = .false.<br> bfbflag = .false.<br> diagfreq = 24<br> diag_type = 'stdout'<br> diag_file = 'ice_diag.d'<br> print_global = .true.<br> print_points = .true.<br> latpnt(1) = 90.<br> lonpnt(1) = 0.<br> latpnt(2) = -65.<br> lonpnt(2) = -45.<br> dbug = .false.<br> histfreq = 'm','d','x','x','x'<br> histfreq_n = 1 , 1 , 1 , 1 , 1<br> hist_avg = .true.<br> history_dir = './history/'<br> history_file = 'iceh'<br> write_ic = .true.<br> incond_dir = './history/'<br> incond_file = 'iceh_ic'<br> /</p> <p>&grid_nml<br> grid_format = 'bin'<br> grid_type = 'displaced_pole'<br> grid_file = '/usr/projects/climate/eclare/DATA/Consortium/CICE_data/grid/gx1/grid_gx1.bin'<br> kmt_file = '/usr/projects/climate/eclare/DATA/Consortium/CICE_data/grid/gx1/kmt_gx1.bin'<br> gridcpl_file = 'unknown_gridcpl_file'<br> kcatbound = 0<br> /</p> <p>&domain_nml<br> nprocs = 32<br> processor_shape = 'slenderX2'<br> distribution_type = 'cartesian'<br> distribution_wght = 'latitude'<br> ew_boundary_type = 'cyclic'<br> ns_boundary_type = 'open'<br> maskhalo_dyn = .false.<br> maskhalo_remap = .false.<br> maskhalo_bound = .false.<br> /</p> <p>&tracer_nml<br> tr_iage = .true.<br> restart_age = .false.<br> tr_FY = .true.<br> restart_FY = .false.<br> tr_lvl = .true.<br> restart_lvl = .false.<br> tr_pond_cesm = .false.<br> restart_pond_cesm = .false.<br> tr_pond_topo = .false.<br> restart_pond_topo = .false.<br> tr_pond_lvl = .true.<br> restart_pond_lvl = .false.<br> tr_aero = .false.<br> restart_aero = .false.<br> /</p> <p>&thermo_nml<br> kitd = 1<br> ktherm = 2<br> conduct = 'bubbly'<br> a_rapid_mode = 0.5e-3<br> Rac_rapid_mode = 10.0<br> aspect_rapid_mode = 1.0<br> dSdt_slow_mode = -5.0e-8<br> phi_c_slow_mode = 0.05<br> phi_i_mushy = 0.85<br> /</p> <p>&dynamics_nml<br> kdyn = 1<br> ndte = 120<br> revised_evp = .false.<br> advection = 'remap'<br> kstrength = 1<br> krdg_partic = 1<br> krdg_redist = 1<br> mu_rdg = 3<br> Cf = 17.<br> Ktens = 0.<br> e_ratio = 2.<br> basalstress = .false.<br> /</p> <p>&shortwave_nml<br> shortwave = 'dEdd'<br> albedo_type = 'default'<br> albicev = 0.78<br> albicei = 0.36<br> albsnowv = 0.98<br> albsnowi = 0.70 <br> ahmax = 0.3<br> R_ice = 0.<br> R_pnd = 0.<br> R_snw = 1.5<br> dT_mlt = 1.5<br> rsnw_mlt = 1500.<br> kalg = 0.6<br> /</p> <p>&ponds_nml<br> hp1 = 0.01<br> hs0 = 0.<br> hs1 = 0.03<br> dpscale = 1.e-3<br> frzpnd = 'hlid'<br> rfracmin = 0.15<br> rfracmax = 1.<br> pndaspect = 0.8<br> /</p> <p>&zbgc_nml<br> tr_brine = .false.<br> restart_hbrine = .false.<br> tr_zaero = .false.<br> modal_aero = .false.<br> skl_bgc = .false.<br> z_tracers = .false.<br> dEdd_algae = .false.<br> solve_zbgc = .false.<br> bgc_flux_type = 'Jin2006'<br> restore_bgc = .false.<br> restart_bgc = .false.<br> scale_bgc = .false.<br> solve_zsal = .false.<br> restart_zsal = .false.<br> bgc_data_dir = '/uknown_bgc_data_dir'<br> sil_data_type = 'default'<br> nit_data_type = 'default'<br> fe_data_type = 'default'<br> tr_bgc_Nit = .true.<br> tr_bgc_C = .true.<br> tr_bgc_chl = .false.<br> tr_bgc_Am = .true.<br> tr_bgc_Sil = .true.<br> tr_bgc_DMS = .false.<br> tr_bgc_PON = .true.<br> tr_bgc_hum = .true.<br> tr_bgc_DON = .false.<br> tr_bgc_Fe = .true. <br> grid_o = 0.006<br> grid_o_t = 0.006<br> l_sk = 0.024<br> grid_oS = 0.0<br> l_skS = 0.028<br> phi_snow = -0.3<br> initbio_frac = 0.8<br> frazil_scav = 0.8 <br> ratio_Si2N_diatoms = 1.8 <br> ratio_Si2N_sp = 0.0<br> ratio_Si2N_phaeo = 0.0<br> ratio_S2N_diatoms = 0.03 <br> ratio_S2N_sp = 0.03 <br> ratio_S2N_phaeo = 0.03<br> ratio_Fe2C_diatoms = 0.0033<br> ratio_Fe2C_sp = 0.0033<br> ratio_Fe2C_phaeo = 0.1<br> ratio_Fe2N_diatoms = 0.023 <br> ratio_Fe2N_sp = 0.023<br> ratio_Fe2N_phaeo = 0.7<br> ratio_Fe2DON = 0.023<br> ratio_Fe2DOC_s = 0.1<br> ratio_Fe2DOC_l = 0.033<br> fr_resp = 0.05<br> tau_min = 5200.0<br> tau_max = 173000.0<br> algal_vel = 0.0000000111<br> R_dFe2dust = 0.035<br> dustFe_sol = 0.005<br> chlabs_diatoms = 0.03<br> chlabs_sp = 0.01<br> chlabs_phaeo = 0.05<br> alpha2max_low_diatoms = 0.8<br> alpha2max_low_sp = 0.67<br> alpha2max_low_phaeo = 0.67<br> beta2max_diatoms = 0.018<br> beta2max_sp = 0.0025<br> beta2max_phaeo = 0.01<br> mu_max_diatoms = 1.44<br> mu_max_sp = 0.851<br> mu_max_phaeo = 0.851<br> grow_Tdep_diatoms = 0.06<br> grow_Tdep_sp = 0.06<br> grow_Tdep_phaeo = 0.06<br> fr_graze_diatoms = 0.0<br> fr_graze_sp = 0.1<br> fr_graze_phaeo = 0.1<br> mort_pre_diatoms = 0.007<br> mort_pre_sp = 0.007<br> mort_pre_phaeo = 0.007<br> mort_Tdep_diatoms = 0.03<br> mort_Tdep_sp = 0.03<br> mort_Tdep_phaeo = 0.03<br> k_exude_diatoms = 0.0<br> k_exude_sp = 0.0<br> k_exude_phaeo = 0.0<br> K_Nit_diatoms = 1.0<br> K_Nit_sp = 1.0<br> K_Nit_phaeo = 1.0<br> K_Am_diatoms = 0.3<br> K_Am_sp = 0.3<br> K_Am_phaeo = 0.3<br> K_Sil_diatoms = 4.0<br> K_Sil_sp = 0.0<br> K_Sil_phaeo = 0.0<br> K_Fe_diatoms = 1.0<br> K_Fe_sp = 0.2<br> K_Fe_phaeo = 0.1<br> f_don_protein = 0.6<br> kn_bac_protein = 0.03<br> f_don_Am_protein = 0.25<br> f_doc_s = 0.4<br> f_doc_l = 0.4<br> f_exude_s = 1.0<br> f_exude_l = 1.0<br> k_bac_s = 0.03<br> k_bac_l = 0.03<br> T_max = 0.0<br> fsal = 1.0<br> op_dep_min = 0.1<br> fr_graze_s = 0.5<br> fr_graze_e = 0.5<br> fr_mort2min = 0.5<br> fr_dFe = 0.3<br> k_nitrif = 0.0<br> t_iron_conv = 3065.0<br> max_loss = 0.9<br> max_dfe_doc1 = 0.2<br> fr_resp_s = 0.75<br> y_sk_DMS = 0.5<br> t_sk_conv = 3.0<br> t_sk_ox = 10.0<br> algaltype_diatoms = 0.0<br> algaltype_sp = 0.5<br> algaltype_phaeo = 0.5<br> nitratetype = -1.0<br> ammoniumtype = 1.0<br> silicatetype = -1.0<br> dmspptype = 0.5<br> dmspdtype = -1.0<br> humtype = 1.0<br> doctype_s = 0.5<br> doctype_l = 0.5<br> dontype_protein = 0.5<br> fedtype_1 = 0.5<br> feptype_1 = 0.5<br> zaerotype_bc1 = 1.0<br> zaerotype_bc2 = 1.0<br> zaerotype_dust1 = 1.0<br> zaerotype_dust2 = 1.0<br> zaerotype_dust3 = 1.0<br> zaerotype_dust4 = 1.0<br> ratio_C2N_diatoms = 7.0<br> ratio_C2N_sp = 7.0<br> ratio_C2N_phaeo = 7.0<br> ratio_chl2N_diatoms= 2.1<br> ratio_chl2N_sp = 1.1<br> ratio_chl2N_phaeo = 0.84<br> F_abs_chl_diatoms = 2.0<br> F_abs_chl_sp = 4.0<br> F_abs_chl_phaeo = 5.0<br> ratio_C2N_proteins = 7.0<br> /</p> <p>&forcing_nml<br> formdrag = .false.<br> atmbndy = 'default'<br> fyear_init = 1990<br> ycycle = 20<br> atm_data_format = 'bin'<br> atm_data_type = 'LYq'<br> atm_data_dir = '/usr/projects/climate/eclare/DATA/Consortium/CICE_data/forcing/gx1/COREII'<br> calc_strair = .true.<br> highfreq = .false.<br> natmiter = 5<br> calc_Tsfc = .true.<br> precip_units = 'mm_per_sec'<br> ustar_min = 0.0005<br> fbot_xfer_type = 'constant'<br> update_ocn_f = .false.<br> l_mpond_fresh = .false.<br> tfrz_option = 'mushy'<br> oceanmixed_ice = .true.<br> ocn_data_format = 'nc'<br> sss_data_type = 'ncar'<br> sst_data_type = 'ncar'<br> ocn_data_dir = '/usr/projects/climate/eclare/DATA/gx1v3/gx1v3/forcing/'<br> oceanmixed_file = 'oceanmixed_ice_depth.nc'<br> restore_sst = .false.<br> trestore = 90<br> restore_ice = .false.<br> /</p> <p>&icefields_nml<br> f_tmask = .true.<br> f_blkmask = .true.<br> f_tarea = .true.<br> f_uarea = .true.<br> f_dxt = .false.<br> f_dyt = .false.<br> f_dxu = .false.<br> f_dyu = .false.<br> f_HTN = .false.<br> f_HTE = .false.<br> f_ANGLE = .true.<br> f_ANGLET = .true.<br> f_NCAT = .true.<br> f_VGRDi = .false.<br> f_VGRDs = .false.<br> f_VGRDb = .false.<br> f_VGRDa = .true.<br> f_bounds = .false.<br> f_aice = 'm' <br> f_hi = 'm'<br> f_hs = 'm' <br> f_Tsfc = 'm' <br> f_sice = 'm' <br> f_uvel = 'm' <br> f_vvel = 'm' <br> f_uatm = 'm' <br> f_vatm = 'm' <br> f_fswdn = 'm' <br> f_flwdn = 'm'<br> f_snowfrac = 'x'<br> f_snow = 'x' <br> f_snow_ai = 'm' <br> f_rain = 'x' <br> f_rain_ai = 'm' <br> f_sst = 'm' <br> f_sss = 'm' <br> f_uocn = 'm' <br> f_vocn = 'm' <br> f_frzmlt = 'm'<br> f_fswfac = 'm'<br> f_fswint_ai = 'm'<br> f_fswabs = 'x' <br> f_fswabs_ai = 'm' <br> f_albsni = 'm' <br> f_alvdr = 'x'<br> f_alidr = 'x'<br> f_alvdf = 'x'<br> f_alidf = 'x'<br> f_alvdr_ai = 'x'<br> f_alidr_ai = 'x'<br> f_alvdf_ai = 'x'<br> f_alidf_ai = 'x'<br> f_albice = 'x'<br> f_albsno = 'x'<br> f_albpnd = 'x'<br> f_coszen = 'x'<br> f_flat = 'x' <br> f_flat_ai = 'm' <br> f_fsens = 'x' <br> f_fsens_ai = 'm' <br> f_fswup = 'x' <br> f_flwup = 'x' <br> f_flwup_ai = 'm' <br> f_evap = 'x' <br> f_evap_ai = 'm' <br> f_Tair = 'm' <br> f_Tref = 'x' <br> f_Qref = 'x'<br> f_congel = 'm' <br> f_frazil = 'm' <br> f_snoice = 'm' <br> f_dsnow = 'x' <br> f_melts = 'm'<br> f_meltt = 'm'<br> f_meltb = 'm'<br> f_meltl = 'm'<br> f_fresh = 'x'<br> f_fresh_ai = 'm'<br> f_fsalt = 'x'<br> f_fsalt_ai = 'm'<br> f_fbot = 'm'<br> f_fhocn = 'x' <br> f_fhocn_ai = 'm' <br> f_fswthru = 'x' <br> f_fswthru_ai = 'm' <br> f_fsurf_ai = 'x'<br> f_fcondtop_ai = 'x'<br> f_fmeltt_ai = 'x' <br> f_strairx = 'm' <br> f_strairy = 'm' <br> f_strtltx = 'x' <br> f_strtlty = 'x' <br> f_strcorx = 'x' <br> f_strcory = 'x' <br> f_strocnx = 'x' <br> f_strocny = 'x' <br> f_strintx = 'x' <br> f_strinty = 'x'<br> f_taubx = 'x'<br> f_tauby = 'x'<br> f_strength = 'm'<br> f_divu = 'm'<br> f_shear = 'm'<br> f_sig1 = 'm' <br> f_sig2 = 'm' <br> f_dvidtt = 'm' <br> f_dvidtd = 'm' <br> f_daidtt = 'm'<br> f_daidtd = 'm' <br> f_dagedtt = 'm'<br> f_dagedtd = 'm' <br> f_mlt_onset = 'm'<br> f_frz_onset = 'm'<br> f_hisnap = 'd'<br> f_aisnap = 'd'<br> f_trsig = 'm'<br> f_icepresent = 'm'<br> f_iage = 'm'<br> f_FY = 'x'<br> f_aicen = 'x'<br> f_vicen = 'x'<br> f_vsnon = 'x'<br> f_snowfracn = 'x'<br> f_keffn_top = 'x'<br> f_Tinz = 'x'<br> f_Sinz = 'x'<br> f_Tsnz = 'x'<br> f_fsurfn_ai = 'x'<br> f_fcondtopn_ai = 'x'<br> f_fmelttn_ai = 'x'<br> f_flatn_ai = 'x'<br> f_fsensn_ai = 'x'<br> /</p> <p>&icefields_mechred_nml<br> f_alvl = 'm'<br> f_vlvl = 'm'<br> f_ardg = 'm'<br> f_vrdg = 'm'<br> f_dardg1dt = 'x'<br> f_dardg2dt = 'x'<br> f_dvirdgdt = 'x'<br> f_opening = 'x'<br> f_ardgn = 'x'<br> f_vrdgn = 'x'<br> f_dardg1ndt = 'x'<br> f_dardg2ndt = 'x'<br> f_dvirdgndt = 'x'<br> f_krdgn = 'x'<br> f_aparticn = 'x'<br> f_aredistn = 'x'<br> f_vredistn = 'x'<br> f_araftn = 'x'<br> f_vraftn = 'x'<br> /</p> <p>&icefields_pond_nml<br> f_apondn = 'x'<br> f_apeffn = 'x'<br> f_hpondn = 'x'<br> f_apond = 'm'<br> f_hpond = 'm'<br> f_ipond = 'm'<br> f_apeff = 'm'<br> f_apond_ai = 'm'<br> f_hpond_ai = 'm'<br> f_ipond_ai = 'm'<br> f_apeff_ai = 'm'<br> /</p> <p>&icefields_bgc_nml<br> f_faero_atm = 'x'<br> f_faero_ocn = 'x'<br> f_aero = 'x' <br> f_fbio = 'm'<br> f_fbio_ai = 'm'<br> f_zaero = 'x'<br> f_bgc_S = 'm'<br> f_bgc_N = 'm'<br> f_bgc_C = 'x'<br> f_bgc_DOC = 'm'<br> f_bgc_DIC = 'x'<br> f_bgc_chl = 'x'<br> f_bgc_Nit = 'm'<br> f_bgc_Am = 'm'<br> f_bgc_Sil = 'm'<br> f_bgc_DMSPp = 'x'<br> f_bgc_DMSPd = 'x'<br> f_bgc_DMS = 'x'<br> f_bgc_DON = 'x' <br> f_bgc_Fe = 'm' <br> f_bgc_hum = 'm' <br> f_bgc_PON = 'm'<br> f_bgc_ml = 'm'<br> f_upNO = 'm'<br> f_upNH = 'm'<br> f_bTin = 'm'<br> f_bphi = 'm' <br> f_iDi = 'm'<br> f_iki = 'm'<br> f_fbri = 'm' <br> f_hbri = 'm'<br> f_zfswin = 'm'<br> f_bionet = 'm'<br> f_biosnow = 'm'<br> f_grownet = 'm'<br> f_PPnet = 'm'<br> f_algalpeak = 'm'<br> f_zbgc_frac = 'm'<br> /</p> <p>&icefields_drag_nml<br> f_drag = 'x'<br> f_Cdn_atm = 'x'<br> f_Cdn_ocn = 'x'<br> /</p>
RASM simulations: Quality Control for Community Based Sea Ice Model Development
<p>RASM simulations: Quality Control for Community Based Sea Ice Model Development<br> -----------------------------------------------------------------------------------</p> <p>Data from the Regional Arctic System Model (RASM) simulations by Andrew F. Roberts at Naval Postgraduate School, described in the manuscript:</p> <p>Roberts, Hunke, Allard, Bailey, Craig, Lemieux and Turner (2018): Quality Control for Community Based Sea Ice Model Development.</p> <p>It was produced using RASM with CICE sea ice model version 5.2 with the namelist:</p> <p>&setup_nml<br> bfbflag = .false. <br> diagfreq = 24 <br> hist_avg = .true. <br> histfreq = 'h','x','x','x','x'<br> histfreq_n = 1,0,0,0,0<br> ice_ic = '/work4/projects/apcraig_dir/RACM/inputdata/ccsm4_init/R1008Gcaaa01a_loop2/1979-09-01/R1008Gcaaa01a_loop2.cice.r.1979-09-01-00000.nc'<br> latpnt = 90.0,-65.0 <br> lcdf64 = .true. <br> lonpnt = 0.0,-45.0 <br> ndtd = 1 <br> pointer_file = './rpointer.ice'<br> print_global = .true. <br> print_points = .false. <br> restart_ext = .false. <br> restart_format = 'pio'<br> year_init = 1 <br> /<br> &grid_nml<br> grid_file = '/work4/projects/apcraig_dir/RACM/inputdata/ice/cice/ar9v3_20101118.grid'<br> grid_format = 'bin'<br> grid_type = 'regional'<br> gridcpl_file = '/work4/projects/apcraig_dir/RACM/inputdata/ice/cice/domain.ocn.ar9v4.100920.nc'<br> kcatbound = 0 <br> kmt_file = '/work4/projects/apcraig_dir/RACM/inputdata/ice/cice/ar9v3_20110106.kmt'<br> /<br> &tracer_nml<br> restart_aero = .false. <br> restart_age = .false. <br> restart_fy = .false. <br> restart_lvl = .false. <br> restart_pond_cesm = .false. <br> restart_pond_lvl = .false. <br> restart_pond_topo = .false. <br> tr_aero = .false.<br> tr_fy = .true. <br> tr_iage = .true. <br> tr_lvl = .true. <br> tr_pond_cesm = .false. <br> tr_pond_lvl = .true. <br> tr_pond_topo = .false. <br> /<br> &thermo_nml<br> a_rapid_mode = 0.5e-03 <br> aspect_rapid_mode = 1.0 <br> conduct = 'bubbly'<br> dsdt_slow_mode = -1.5e-07 <br> kitd = 1 <br> ktherm = 2 <br> phi_c_slow_mode = 0.05 <br> phi_i_mushy = 0.85 <br> rac_rapid_mode = 10 <br> /<br> &dynamics_nml<br> advection = 'remap'<br> cf = 21.3<br> kdyn = 2 (EAP) or kdyn = 2 (EVP)<br> krdg_partic = 1<br> krdg_redist = 1<br> kstrength = 1 <br> mu_rdg = 3.0<br> ndte = 600 <br> revised_evp = .false. <br> /<br> &shortwave_nml<br> ahmax = 0.3 <br> albedo_type = 'default'<br> albicei = 0.45<br> albicev = 0.75<br> albsnowi = 0.73<br> albsnowv = 0.98<br> dt_mlt = 1.00 <br> kalg = 0.0 <br> r_ice = 0.0 <br> r_pnd = 0.0 <br> r_snw = 0.50 <br> rsnw_mlt = 1000. <br> shortwave = 'dEdd'<br> /<br> &ponds_nml<br> dpscale = 1.0e-3 <br> frzpnd = 'hlid'<br> hp1 = 0.01 <br> hs0 = 0.03 <br> hs1 = 0.03 <br> pndaspect = 0.8 <br> rfracmax = 0.85 <br> rfracmin = 0.15 <br> /<br> &forcing_nml<br> fbot_xfer_type = 'constant'<br> formdrag = .false.<br> highfreq = .true.<br> l_mpond_fresh = .false.<br> natmiter = 25 <br> tfrz_option = 'mushy'<br> /<br> &domain_nml<br> distribution_type = 'roundrobin'<br> ew_boundary_type = 'cyclic'<br> maskhalo_bound = .true.<br> maskhalo_dyn = .true.<br> maskhalo_remap = .true.<br> ns_boundary_type = 'open'<br> processor_shape = 'null'<br> /<br> &zbgc_nml<br> bgc_data_dir = 'unknown_bgc_data_dir'<br> bgc_flux_type = 'Jin2006'<br> nit_data_type = 'unknown'<br> phi_snow = 0.5 <br> restart_bgc = .false. <br> restart_hbrine = .false. <br> restore_bgc = .false. <br> sil_data_type = 'unknown'<br> skl_bgc = .false. <br> tr_bgc_am_sk = .false. <br> tr_bgc_c_sk = .false. <br> tr_bgc_chl_sk = .false. <br> tr_bgc_dms_sk = .false. <br> tr_bgc_dmspd_sk = .false. <br> tr_bgc_dmspp_sk = .false. <br> tr_bgc_sil_sk = .false. <br> tr_brine = .false. <br> /<br> &icefields_bgc_nml<br> f_aero = 'mxxxx'<br> f_aeron = 'xxxxx'<br> f_bgc_am_ml = 'xxxxx'<br> f_bgc_am_sk = 'xxxxx'<br> f_bgc_c = 'xxxxx'<br> f_bgc_c_sk = 'xxxxx'<br> f_bgc_chl = 'xxxxx'<br> f_bgc_chl_sk = 'xxxxx'<br> f_bgc_dms = 'xxxxx'<br> f_bgc_dms_ml = 'xxxxx'<br> f_bgc_dms_sk = 'xxxxx'<br> f_bgc_dmsp_ml = 'xxxxx'<br> f_bgc_dmspd = 'xxxxx'<br> f_bgc_dmspd_sk = 'xxxxx'<br> f_bgc_dmspp = 'xxxxx'<br> f_bgc_dmspp_sk = 'xxxxx'<br> f_bgc_n = 'xxxxx'<br> f_bgc_n_sk = 'xxxxx'<br> f_bgc_nh = 'xxxxx'<br> f_bgc_nit_ml = 'xxxxx'<br> f_bgc_nit_sk = 'xxxxx'<br> f_bgc_no = 'xxxxx'<br> f_bgc_s = 'xxxxx'<br> f_bgc_sil = 'xxxxx'<br> f_bgc_sil_ml = 'xxxxx'<br> f_bgc_sil_sk = 'xxxxx'<br> f_bphi = 'xxxxx'<br> f_btin = 'xxxxx'<br> f_faero_atm = 'mxxxx'<br> f_faero_ocn = 'mxxxx'<br> f_fbri = 'xxxxx'<br> f_fn = 'xxxxx'<br> f_fn_ai = 'xxxxx'<br> f_fnh = 'xxxxx'<br> f_fnh_ai = 'xxxxx'<br> f_fno = 'xxxxx'<br> f_fno_ai = 'xxxxx'<br> f_fsil = 'xxxxx'<br> f_fsil_ai = 'xxxxx'<br> f_grownet = 'xxxxx'<br> f_hbri = 'xxxxx'<br> f_ppnet = 'xxxxx'<br> /<br> &icefields_drag_nml<br> f_cdn_atm = 'hxxxx'<br> f_cdn_ocn = 'hxxxx'<br> f_drag = 'hxxxx'<br> /<br> &icefields_mechred_nml<br> f_alvl = 'hxxxx'<br> f_aparticn = 'xxxxx'<br> f_araftn = 'xxxxx'<br> f_ardg = 'hxxxx'<br> f_ardgn = 'hxxxx'<br> f_aredistn = 'xxxxx'<br> f_dardg1dt = 'xxxxx'<br> f_dardg1ndt = 'xxxxx'<br> f_dardg2dt = 'xxxxx'<br> f_dardg2ndt = 'xxxxx'<br> f_dvirdgdt = 'xxxxx'<br> f_dvirdgndt = 'xxxxx'<br> f_krdgn = 'xxxxx'<br> f_opening = 'hxxxx'<br> f_vlvl = 'hxxxx'<br> f_vraftn = 'xxxxx'<br> f_vrdg = 'hxxxx'<br> f_vrdgn = 'hxxxx'<br> f_vredistn = 'xxxxx'<br> /<br> &icefields_pond_nml<br> f_apeff = 'hxxxx'<br> f_apeff_ai = 'hxxxx'<br> f_apeffn = 'hxxxx'<br> f_apond = 'hxxxx'<br> f_apond_ai = 'hxxxx'<br> f_apondn = 'hxxxx'<br> f_hpond = 'hxxxx'<br> f_hpond_ai = 'hxxxx'<br> f_hpondn = 'hxxxx'<br> f_ipond = 'hxxxx'<br> f_ipond_ai = 'hxxxx'<br> /<br> &icefields_nml<br> f_a11 = 'hxxxx'<br> f_a12 = 'hxxxx'<br> f_aice = 'hxxxx'<br> f_aicen = 'hxxxx'<br> f_aisnap = 'hxxxx'<br> f_albice = 'hxxxx'<br> f_albpnd = 'hxxxx'<br> f_albsni = 'hxxxx'<br> f_albsno = 'hxxxx'<br> f_alidf = 'hxxxx'<br> f_alidr = 'hxxxx'<br> f_alvdf = 'hxxxx'<br> f_alvdr = 'hxxxx'<br> f_angle = .true.<br> f_anglet = .true.<br> f_blkmask = .true.<br> f_bounds = .false.<br> f_congel = 'hxxxx'<br> f_coszen = 'hxxxx'<br> f_daidtd = 'hxxxx'<br> f_daidtt = 'hxxxx'<br> f_divu = 'hxxxx'<br> f_dsnow = 'hxxxx'<br> f_dvidtd = 'hxxxx'<br> f_dvidtt = 'hxxxx'<br> f_dxt = .false.<br> f_dxu = .false.<br> f_dyt = .false.<br> f_dyu = .false.<br> f_e11 = 'xxxxx'<br> f_e12 = 'xxxxx'<br> f_e22 = 'xxxxx'<br> f_evap = 'hxxxx'<br> f_evap_ai = 'hxxxx'<br> f_fcondtop_ai = 'hxxxx'<br> f_fcondtopn_ai = 'hxxxx'<br> f_fhocn = 'hxxxx'<br> f_fhocn_ai = 'hxxxx'<br> f_flat = 'hxxxx'<br> f_flat_ai = 'hxxxx'<br> f_flatn_ai = 'hxxxx'<br> f_flwdn = 'hxxxx'<br> f_flwup = 'hxxxx'<br> f_flwup_ai = 'hxxxx'<br> f_fmeltt_ai = 'hxxxx'<br> f_fmelttn_ai = 'hxxxx'<br> f_frazil = 'hxxxx'<br> f_fresh = 'hxxxx'<br> f_fresh_ai = 'hxxxx'<br> f_frz_onset = 'hxxxx'<br> f_frzmlt = 'hxxxx'<br> f_fsalt = 'hxxxx'<br> f_fsalt_ai = 'hxxxx'<br> f_fsens = 'hxxxx'<br> f_fsens_ai = 'hxxxx'<br> f_fsensn_ai = 'hxxxx'<br> f_fsurf_ai = 'hxxxx'<br> f_fsurfn_ai = 'hxxxx'<br> f_fswabs = 'hxxxx'<br> f_fswabs_ai = 'hxxxx'<br> f_fswdn = 'hxxxx'<br> f_fswfac = 'hxxxx'<br> f_fswint_ai = 'xxxxx'<br> f_fswthru = 'hxxxx'<br> f_fswthru_ai = 'hxxxx'<br> f_fy = 'hxxxx'<br> f_hi = 'hxxxx'<br> f_hisnap = 'xxxxx'<br> f_hs = 'hxxxx'<br> f_hte = .false.<br> f_htn = .false.<br> f_iage = 'hxxxx'<br> f_icepresent = 'hxxxx'<br> f_keffn_top = 'xxxxx'<br> f_meltb = 'hxxxx'<br> f_meltl = 'hxxxx'<br> f_melts = 'hxxxx'<br> f_meltt = 'hxxxx'<br> f_mlt_onset = 'hxxxx'<br> f_ncat = .true.<br> f_qref = 'hxxxx'<br> f_rain = 'hxxxx'<br> f_rain_ai = 'hxxxx'<br> f_s11 = 'hxxxx'<br> f_s12 = 'hxxxx'<br> f_s22 = 'hxxxx'<br> f_shear = 'hxxxx'<br> f_sice = 'hxxxx'<br> f_sig1 = 'hxxxx'<br> f_sig2 = 'hxxxx'<br> f_sinz = 'xxxxx'<br> f_snoice = 'hxxxx'<br> f_snow = 'hxxxx'<br> f_snow_ai = 'hxxxx'<br> f_sss = 'hxxxx'<br> f_sst = 'hxxxx'<br> f_strairx = 'hxxxx'<br> f_strairy = 'hxxxx'<br> f_strcorx = 'hxxxx'<br> f_strcory = 'hxxxx'<br> f_strength = 'hxxxx'<br> f_strintx = 'hxxxx'<br> f_strinty = 'hxxxx'<br> f_strocnx = 'hxxxx'<br> f_strocny = 'hxxxx'<br> f_strtltx = 'hxxxx'<br> f_strtlty = 'hxxxx'<br> f_tair = 'hxxxx'<br> f_tarea = .true.<br> f_tinz = 'xxxxx'<br> f_tmask = .true.<br> f_tref = 'hxxxx'<br> f_trsig = 'hxxxx'<br> f_tsfc = 'hxxxx'<br> f_tsnz = 'xxxxx'<br> f_uarea = .true.<br> f_uatm = 'hxxxx'<br> f_uocn = 'hxxxx'<br> f_uvel = 'hxxxx'<br> f_vatm = 'hxxxx'<br> f_vgrdb = .true.<br> f_vgrdi = .true.<br> f_vgrds = .true.<br> f_vicen = 'hxxxx'<br> f_vocn = 'hxxxx'<br> f_vsnon = 'hxxxx'<br> f_vvel = 'hxxxx'<br> f_yieldstress11 = 'hxxxx'<br> f_yieldstress12 = 'hxxxx'<br> f_yieldstress22 = 'hxxxx'<br> /<br> &ice_prescribed_nml<br> prescribed_ice = .false.<br> /</p>
GOFS simulations: Quality Control for Community Based Sea Ice Model Development
<p>GOFS simulations: Quality Control for Community Based Sea Ice Model Development<br> -----------------------------------------------------------------------------------</p> <p>Data from the Global Ocean Forecast System (GOFS 3.1) from the Naval Research Laboratory, curated by Richard Allard, and described in the manuscript:</p> <p>Roberts, Hunke, Allard, Bailey, Craig, Lemieux and Turner (2018): Quality Control for Community Based Sea Ice Model Development.</p> <p>It was produced using GOFS with CICE sea ice model version 4.0 with the namelist:</p> <p>&setup_nml<br> days_per_year= 366<br> , year_init = 1901<br> , istep0 = 0<br> , dt = 225.0<br> , npt = -1 <br> , ndyn_dt = 1<br> , inserthr = 0<br> , runtype = 'continue'<br> , ice_ic = 'default'<br> , restart = .true.<br> , restart_dir = './'<br> , restart_file = 'cice.restart'<br> , pointer_file = './cice.restart_file'<br> , histfreq = 'h'<br> , histfreq_n = 12<br> , dumpfreq = '5'<br> , dumpfreq_n = 1<br> , diagfreq = 8<br> , diag_type = 'stdout'<br> , diag_file = 'ice.diag.d'<br> , print_global = .true.<br> , print_points = .true.<br> , latpnt(1) = 72.011<br> , lonpnt(1) = -149.987<br> , latpnt(2) = 90.<br> , lonpnt(2) = 0.<br> , dbug = .false.<br> , incond_dir = <br> , incond_file = './cice'<br> /<br> &grid_nml<br> grid_format = 'bin'<br> , grid_type = 'hycom'<br> , grid_file = 'regional.cice.r'<br> , kmt_file = 'kmt'<br> , kcatbound = 0 <br> /<br> &domain_nml<br> nprocs = 1800<br> , processor_shape = 'slenderX4'<br> , distribution_type = 'cartesian'<br> , distribution_wght = 'latitude'<br> , ew_boundary_type = 'cyclic'<br> , ns_boundary_type = 'tripole'<br> /<br> &tracer_nml<br> tr_iage = .false.<br> , restart_age = .false.<br> , tr_pond = .false.<br> , restart_pond = .false.<br> /<br> &ice_nml<br> kitd = 1<br> , kdyn = 1<br> , ndte = 120<br> , kstrength = 1<br> , krdg_partic = 1<br> , krdg_redist = 1<br> , advection = 'remap'<br> , heat_capacity = .true.<br> , shortwave = 'default'<br> , albedo_type = 'default'<br> , albicev = 0.78<br> , albicei = 0.36<br> , albsnowv = 0.98<br> , albsnowi = 0.70 <br> , R_ice = 0.0<br> , R_pnd = 0.0<br> , R_snw = 0.0<br> , atmbndy = 'default'<br> , fyear_init = 1911 <br> , ycycle = 1 <br> , atm_data_format = 'bin'<br> , atm_data_type= 'cfsr'<br> , atm_data_dir = './cice.'<br> , calc_strair = .true.<br> , calc_Tsfc = .true.<br> , precip_units = 'mm_per_month'<br> , Tfrzpt = 'linear_S'<br> , update_ocn_f = .false.<br> , oceanmixed_ice = .true.<br> , ocn_data_format = 'bin'<br> , sss_data_type= 'cfsr'<br> , sst_data_type= 'cfsr'<br> , ocn_data_dir = 'COUPLED'<br> , oceanmixed_file= 'pop_frc.gx1v3.051202.nc'<br> , restore_sst = .true.<br> , insert_ssmi = .true.<br> , insert_sih = .false.<br> , trestore = 1 <br> , atm_netrad = .false.<br> , albnetrad = 0.00<br> /<br> &icefields_nml<br> f_tmask = .false.<br> , f_tarea = .false.<br> , f_uarea = .false.<br> , f_dxt = .false.<br> , f_dyt = .false.<br> , f_dxu = .false.<br> , f_dyu = .false.<br> , f_HTN = .false.<br> , f_HTE = .false.<br> , f_ANGLE = .false.<br> , f_ANGLET = .false.<br> , f_bounds = .false.<br> , f_hi = .true.<br> , f_hs = .true. <br> , f_Tsfc = .true. <br> , f_aice = .true. <br> , f_uvel = .true. <br> , f_vvel = .true. <br> , f_fswdn = .true. <br> , f_flwdn = .true.<br> , f_snow = .true. <br> , f_snow_ai = .true. <br> , f_rain = .false. <br> , f_rain_ai = .true. <br> , f_sst = .true. <br> , f_sss = .true. <br> , f_uocn = .true. <br> , f_vocn = .true. <br> , f_frzmlt = .true.<br> , f_fswabs = .true. <br> , f_fswabs_ai = .true. <br> , f_albsni = .true. <br> , f_alvdr = .false.<br> , f_alidr = .false.<br> , f_flat = .false. <br> , f_flat_ai = .true. <br> , f_fsens = .false. <br> , f_fsens_ai = .true. <br> , f_flwup = .false. <br> , f_flwup_ai = .true. <br> , f_evap = .false. <br> , f_evap_ai = .true. <br> , f_Tair = .true. <br> , f_Tref = .false. <br> , f_Qref = .false.<br> , f_congel = .true. <br> , f_frazil = .true. <br> , f_snoice = .true. <br> , f_meltt = .true.<br> , f_meltb = .true.<br> , f_meltl = .true.<br> , f_fresh = .false.<br> , f_fresh_ai = .true.<br> , f_fsalt = .false.<br> , f_fsalt_ai = .true.<br> , f_fhocn = .false. <br> , f_fhocn_ai = .true. <br> , f_fswthru = .false. <br> , f_fswthru_ai= .true. <br> , f_fsurf_ai = .false.<br> , f_fcondtop_ai= .false.<br> , f_fmeltt_ai = .false. <br> , f_strairx = .true. <br> , f_strairy = .true. <br> , f_strtltx = .false. <br> , f_strtlty = .false. <br> , f_strcorx = .true. <br> , f_strcory = .true. <br> , f_strocnx = .true. <br> , f_strocny = .true. <br> , f_strintx = .false. <br> , f_strinty = .false.<br> , f_strength = .true.<br> , f_divu = .true.<br> , f_shear = .false.<br> , f_sig1 = .false. <br> , f_sig2 = .false. <br> , f_dvidtt = .false. <br> , f_dvidtd = .false. <br> , f_daidtt = .false.<br> , f_daidtd = .false. <br> , f_mlt_onset = .false.<br> , f_frz_onset = .false.<br> , f_dardg1dt = .false.<br> , f_dardg2dt = .false.<br> , f_dvirdgdt = .false.<br> , f_opening = .true.<br> , f_hisnap = .false.<br> , f_aisnap = .false.<br> , f_trsig = .false.<br> , f_icepresent= .false.<br> , f_iage = .false.<br> , f_aicen = .false.<br> , f_vicen = .false.<br> , f_fsurfn_ai = .false.<br> , f_fcondtopn_ai = .false.<br> , f_fmelttn_ai = .false.<br> , f_flatn_ai = .false.<br> /</p> <p> </p> <p> </p>
ECCC simulations: Quality Control for Community Based Sea Ice Model Development
<p>ECCC simulations: Quality Control for Community Based Sea Ice Model Development<br> -----------------------------------------------------------------------------------</p> <p>Data from the Environment and Climate Change Canada (ECCC) simulation by Jean-François Lemieux at Environment and Climate Change Canada, described in the manuscript:</p> <p>Roberts, Hunke, Allard, Bailey, Craig, Lemieux and Turner (2018): Quality Control for Community Based Sea Ice Model Development.</p> <p>It was produced using ECCC with CICE sea ice model version 4.0 with the namelist:</p> <p>&setup_nml<br> days_per_year = 365<br> , year_init = 2001100100<br> , istep0 = 0<br> , dt = 600<br> , npt = 2880<br> , ndyn_dt = 1<br> , runtype = 'continue'<br> , ice_ic = 'default'<br> , restart = .true.<br> , restart_dir = 'not_used_at_cmc'<br> , restart_file = 'not_used_at_cmc'<br> , pointer_file = './ice.restart_file'<br> , dumpfreq = 's'<br> , dumpfreq_n = 2880<br> , diagfreq = 144<br> , diag_type = 'file'<br> , diag_file = 'ice_stdout'<br> , print_global = .false.<br> , print_points = .false.<br> , latpnt(1) = 90.<br> , lonpnt(1) = 0.<br> , latpnt(2) = -65.<br> , lonpnt(2) = -45.<br> , dbug = .false.<br> , histfreq = 's' <br> , histfreq_n = 144<br> , hist_avg = .false.<br> , history_dir = './history/'<br> , history_file = 'iceh'<br> , history_format = 'nc'<br> , write_ic = .false.<br> , incond_dir = './history/'<br> , incond_file = 'iceh_ic'<br> /</p> <p>&grid_nml<br> grid_format = 'cmc'<br> , grid_type = 'cmc'<br> , grid_file = 'not_used_at_cmc'<br> , kmt_file = 'not_used_at_cmc'<br> , kcatbound = 2<br> /</p> <p>&domain_nml<br> nprocs = 72<br> , processor_shape = 'square-pop'<br> , distribution_type = 'cartesian'<br> , distribution_wght = 'block'<br> , ew_boundary_type = 'closed'<br> , ns_boundary_type = 'closed'<br> /</p> <p>&tracer_nml<br> tr_iage = .false.<br> , restart_age = .false.<br> , tr_pond = .false.<br> , restart_pond = .false.<br> /</p> <p>&ice_nml<br> kitd = 1<br> , kdyn = 1<br> , ndte = 900<br> , kstrength = 0<br> , Pstar = 27.5e3<br> , floediam = 300.0<br> , hfrazilmin = 0.05 <br> , iceruf = 0.0004<br> , krdg_partic = 1<br> , krdg_redist = 1<br> , advection = 'remap'<br> , heat_capacity = .true.<br> , shortwave = 'default'<br> , albedo_type = 'default'<br> , albicev = 0.85<br> , albicei = 0.40<br> , albsnowv = 0.98<br> , albsnowi = 0.70 <br> , R_ice = 0.<br> , R_pnd = 0.<br> , R_snw = 0.<br> , atmbndy = 'default'<br> , fyear_init = 1000<br> , ycycle = 1<br> , atm_data_format = 'not_used_at_cmc'<br> , atm_data_type = 'cmc'<br> , atm_data_dir = 'not_used_at_cmc'<br> , calc_strair = .true.<br> , calc_Tsfc = .true.<br> , precip_units = 'mks'<br> , Tfrzpt = 'nonlin'<br> , update_ocn_f = .true.<br> , oceanmixed_ice = .false.<br> , oceanmixed_frc = .false.<br> , ocn_data_format = 'not_used_at_cmc'<br> , sss_data_type = 'cmcint'<br> , sst_data_type = 'cmcint'<br> , ocn_data_dir = 'not_used_at_cmc'<br> , oceanmixed_file = 'not_used_at_cmc'<br> , restore_sst = .false.<br> , trestore = 0<br> , dirassm_ice = .false.<br> , restore_ice = .false.<br> , restore_nul = .false.<br> , l_thermo = .true.<br> , l_dynmcs = .true.<br> , z0io = 0.0165<br> , l_dragio_r = .false.<br> , l_basalstress = .true.<br> , k1 = 8.0<br> , k2 = 15.0<br> , u0 = 5e-5<br> , CC = 20.0<br> , Ktens = 0.05<br> , e_ratio = 1.4<br> /</p> <p>&namcmc_nml<br> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!<br> ! CMC grid parameters (cmc_ln_gemgrid = T ==> grtyp=Z, else grtyp=X)<br> ! The buffer zone is not output <br> ! cmc_ln_bdyopn=T ==> open boundaries including buffer zone<br> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!<br> cmc_ln_gemgrid = .false.<br> , cmc_ln_nemogrid = .true.<br> , cmc_nbuff_zone = 0<br> , cmc_ln_bdyopn = .false.<br> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!<br> ! CMC atmospheric forcing parameters<br> cmc_dt_frcd = -9<br> , cmc_dt_prec = -9<br> , cmc_ln_intrp = .true.<br> , cmc_dateo = '20011001.000000' <br> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!<br> ! Input varables ! Long name (doc only) ! nomvar ! Constant (C) or Field (F) !<br> ! ...! Value (if C) ! Binary (B) or Integer (I) (if F) !<br> ! ...! ip1_1 ! ip1_2 ! scaling ! offset !<br> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!<br> ! Grid ...<br> cmc_ulat = 'u-Lat(deg)','ULAT','F',-999.0,'B',-1 ,-1 , 1., 0.<br> cmc_ulon = 'u-Lon(deg)','ULON','F',-999.0,'B',-1 ,-1 , 1., 0.<br> cmc_tlat = 't-Lat(deg)','TLAT','F',-999.0,'B',-1 ,-1 , 1., 0.<br> cmc_tlon = 't-Lon(deg)','TLON','F',-999.0,'B',-1 ,-1 , 1., 0.<br> cmc_kmt = 'Mask (0-1)','KMT', 'F',-999.0,'I',-1 ,-1 , 1., 0.<br> cmc_hte = 'HTE (m) ','HTE' ,'F',-999.0,'B',-1 ,-1 , 1., 0.<br> cmc_htn = 'HTN (m) ','HTN' ,'F',-999.0,'B',-1 ,-1 , 1., 0.<br> ! Ice-ocean state ...<br> cmc_ln_gslcat = .false.<br> cmc_ln_wmocat = .false.<br> cmc_ln_avgcat = .true.<br> cmc_ln_itdspr = .true.<br> cmc_gl = 'GL de CMC ','GL' ,'F',-999.0,'B',-1 ,-1 , 1., 0.<br> cmc_i8 = 'I8 de CMC ','I8' ,'F',-999.0,'B',-1 ,-1 , 1., 0.<br> cmc_uice0 = 'U ice Vel.','null','C', 0.0,' ',-999999999,-999999999, -999., -999.<br> cmc_vice0 = 'V ice Vel.','null','C', 0.0,' ',-999999999,-999999999, -999., -999.<br> ! Ocean forcing ...<br> cmc_ln_frcsss = .false.<br> cmc_ln_frcsst = .false.<br> cmc_ln_frcuvo = .false.<br> ! Atm forcing ... (for ice I. C. internal temp override by restart)<br> cmc_tair = 'Air temp ','TT', 'C', 273.15,' ',999999999,999999999, 999., 999.<br> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!<br> ! Mixed layer parameters<br> cmc_frzeps = 0.0005<br> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!<br> ! Output parameters (cmc_ofmt='F' or 'H', Forecast or Hindcast style)<br> cmc_ofmt = 'H'<br> cmc_npako = -32<br> cmc_ln_stdrsti = .true.<br> cmc_ln_stdrsto = .true.<br> cmc_npakri = -64<br> cmc_npakro = -64<br> cmc_etiket = 'CREG_HCST'<br> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!<br> /</p> <p>&icefields_nml<br> f_tmask = .false.<br> , f_tarea = .false.<br> , f_uarea = .false.<br> , f_dxt = .false.<br> , f_dyt = .false.<br> , f_dxu = .false.<br> , f_dyu = .false.<br> , f_HTN = .false.<br> , f_HTE = .false.<br> , f_ANGLE = .false.<br> , f_ANGLET = .false.<br> , f_bounds = .false.<br> , f_hi = .true.<br> , f_hs = .false. <br> , f_Tsfc = .false. <br> , f_aice = .true. <br> , f_uvel = .false. <br> , f_vvel = .false. <br> , f_fswdn = .false. <br> , f_flwdn = .false.<br> , f_snow = .false. <br> , f_snow_ai = .false. <br> , f_rain = .false. <br> , f_rain_ai = .false. <br> , f_sst = .false. <br> , f_sss = .false. <br> , f_uocn = .false. <br> , f_vocn = .false. <br> , f_frzmlt = .false.<br> , f_fswfac = .false.<br> , f_fswabs = .false. <br> , f_fswabs_ai = .false. <br> , f_albsni = .false. <br> , f_alvdr = .false.<br> , f_alidr = .false.<br> , f_albice = .false.<br> , f_albsno = .false.<br> , f_albpnd = .false.<br> , f_coszen = .false.<br> , f_flat = .false. <br> , f_flat_ai = .false. <br> , f_fsens = .false. <br> , f_fsens_ai = .false. <br> , f_flwup = .false. <br> , f_flwup_ai = .false. <br> , f_evap = .false. <br> , f_evap_ai = .false. <br> , f_Tair = .false. <br> , f_Tref = .false. <br> , f_Qref = .false.<br> , f_congel = .false. <br> , f_frazil = .false. <br> , f_snoice = .false. <br> , f_meltt = .false.<br> , f_meltb = .false.<br> , f_meltl = .false.<br> , f_fresh = .false.<br> , f_fresh_ai = .false.<br> , f_fsalt = .false.<br> , f_fsalt_ai = .false.<br> , f_fhocn = .false. <br> , f_fhocn_ai = .false. <br> , f_fswthru = .false. <br> , f_fswthru_ai = .false. <br> , f_fsurf_ai = .false.<br> , f_fcondtop_ai = .false.<br> , f_fmeltt_ai = .false. <br> , f_strairx = .false. <br> , f_strairy = .false. <br> , f_strtltx = .false. <br> , f_strtlty = .false. <br> , f_strcorx = .false. <br> , f_strcory = .false. <br> , f_strocnx = .false. <br> , f_strocny = .false. <br> , f_strintx = .false. <br> , f_strinty = .false.<br> , f_strength = .false.<br> , f_divu = .false.<br> , f_shear = .false.<br> , f_sig1 = .false. <br> , f_sig2 = .false. <br> , f_sigI = .false. <br> , f_dvidtt = .false. <br> , f_dvidtd = .false. <br> , f_daidtt = .false.<br> , f_daidtd = .false. <br> , f_mlt_onset = .false.<br> , f_frz_onset = .false.<br> , f_dardg1dt = .false.<br> , f_dardg2dt = .false.<br> , f_dvirdgdt = .false.<br> , f_opening = .false.<br> , f_hisnap = .false.<br> , f_aisnap = .false.<br> , f_trsig = .false.<br> , f_icepresent = .false.<br> , f_iage = .false.<br> , f_aicen = .false.<br> , f_vicen = .false.<br> , f_fsurfn_ai = .false.<br> , f_fcondtopn_ai = .false.<br> , f_fmelttn_ai = .false.<br> , f_flatn_ai = .false.<br> , f_apondn = .false.<br> , f_tau_bu = .false.<br> , f_tau_bv = .false.<br> /</p> <p> </p>
2SPT Test Time Series: Quality Control for Community Based Sea Ice Model Development
<p>2SPT Test Time Series: Quality Control for Community Based Sea Ice Model Development</p> <p>------------------------------------------------------------------------------------</p> <p>This dataset comes from Regional Arctic System Model (RASM) simulations by Andrew F. Roberts at Naval Postgraduate School, described and used in Figure 3 in the manuscript:</p> <p>Roberts, Hunke, Allard, Bailey, Craig, Lemieux and Turner (2018): Quality Control for Community Based Sea Ice Model Development.</p> <p>Files for the series in Figure 3 as they appear in that paper to demonstrate the Two-Stage Paired Thickness Test:</p> <p>Figure 3a:</p> <p>R1009RBRcevp01a.cice.h.hi.1996_2000.North_Pole.nc</p> <p>R1009RBRcevp01a_2.cice.h.hi.1996_2000.North_Pole.nc</p> <p> </p> <p>Figure 3b:</p> <p>R1009RBRcevp01a.cice.h.hi.1996_2000.North_Pole.nc</p> <p>R1009RBRceap01a.cice.h.hi.1996_2000.North_Pole.nc</p> <p> </p> <p>Figure 3c:</p> <p>R1009RBRcevp01a.cice.h.hi.1996_2000.North_Bathurst_Island.nc</p> <p>R1009RBRceap01a.cice.h.hi.1996_2000.North_Bathurst_Island.nc</p> <p> </p> <p>Where the name "evp" or "eap" in the file name corresponds to the EVP and EAP simulations as described in the manuscript. These are selected timeseries from 1996 to 2000 from the RASM simasimulations described in section 2 of the above manuscript. CICE namelist settings are identical to the description for the dataset:</p> <p>Roberts, A. (2018). RASM simulations: Quality Control for Community Based Sea Ice Model Development [Data set]. Zenodo. http://doi.org/10.5281/zenodo.1308236</p> <p> </p>
quaqc: Efficient and quick ATAC-seq quality control and filtering at any scale
<p>This repository contains data and code necessary to replicate the analyses for the associated manuscript. Copies of the quaqc and quaqcr programs are also included.</p>
HINC dataset from: Homeopathic treatment as an add-on therapy may improve quality of life and prolong survival in patients with non-small cell lung cancer: A prospective, randomized, placebo-controlled, double-blind, three-arm, multicenter study
<p class="CxSpFirst"><b>Background:</b> Patients with advanced non-small cell lung cancer (NSCLC) have limited treatment options. Alongside conventional anticancer treatment, additive homeopathy might help to alleviate side effects of conventional therapy. The aim of the present study was to investigate whether additive homeopathy might influence quality of life (QoL) and survival in NSCLC patients.</p> <p class="CxSpMiddle"><b>Methods:</b> In this prospective, randomized, placebo-controlled, double-blind, three-arm, multicenter, phase III study, we evaluated the possible effects of additive homeopathic treatment compared with placebo in NSCLC stage IV patients with respect to QoL in the two randomized groups and survival time in all three groups. Treated patients visited the outpatients' centers every 9 weeks. 150 Patients with stage IV NSCLC were included in the study. 98 received either individualized homeopathic remedies (n=51) or placebo (n=47) in a double-blinded fashion. 52 control patients without any homeopathic treatment were observed for survival only. The constituents of the different homeopathic remedies were mainly of plant, mineral or animal origin. The remedies were manufactured by stepwise dilution and succussion, thereby preparing stable Good Manufacturing Practice grade formulations.</p> <p class="CxSpMiddle"><b>Results:</b> QoL as well as functional and symptom scales showed significant improvement in the homeopathy group when compared with placebo after 9 and 18 weeks of homeopathic treatment (p<0.001). Median survival time was significantly longer in the homeopathy group (435 days) vs placebo (257 days; p=0.010) as well as vs control (228 days; p<0.001). Survival rate in the homeopathy group differed significantly from placebo (p=0.020) and from control (p<0.001).</p> <p class="CxSpMiddle"><b>Conclusion:</b> QoL improved significantly in the homeopathy group compared with placebo. In addition, survival was significantly longer in the homeopathy group versus placebo and control. A higher QoL might have contributed to the prolonged survival. The study suggests that homeopathy positively influences not only QoL but also survival. Further studies including other tumor entities are warranted.</p>
Supplementary Dataset for Trenner et al. 2022: Evolution and Functions of Plant U-box proteins (PUBs): From protein quality control to signalling
<p>This record contains additional information and a supplementary dataset of sequence alignment files and phylograms that support the publication:</p> <p>Trenner J, Monaghan J, Saeed B, Quint M, Shabek N, Trujillo M. 2022. Evolution and Functions of Plant U-box proteins (PUBs): From protein quality control to signalling. (submitted to Annual Review of Plant Biology)</p> <p>Included files:</p> <p><em>Additional information.pdf</em></p> <p>This file contains Supplementary Methods and References.</p> <p><br> <em>Supp_Fig1_Ubox_full_protein_maximum_likelihood_phylogram_linear.pdf</em></p> <p>A multiple protein sequence alignment by MAFFT of 1121 U-box protein sequences from 21 species and four outgroup sequences containing a RING finger domain (<em>A. thaliana</em> RBX1, <em>A. thaliana</em> RMA1, <em>S. cerevisiae</em> RAD18, <em>Homo sapiens</em> TRAF6 ) was used to infer a phylogenetic tree by maximum likelihood with IQ-TREE. The implemented ultrafast bootstrap approximation, set to 2000 bootstrap samples, was used for branch support. The consensus tree was annotated using iTOL.</p> <p> </p> <p><em>Supp_Fig2_Ubox_domain_maximum_likelihood_phylogram_linear.pdf</em></p> <p>In order to analyse specifically the evolution of the U-box domain, the U-box domain of the final 1121 U-box protein sequences as well as the RING finger domain of the four outgroup sequences were isolated and aligned by MAFFT. The U-box domain alignment was then used to infer a phylogenetic tree by maximum likelihood with IQ-TREE. The implemented ultrafast bootstrap approximation, set to 2000 bootstrap samples, was used for branch support. The consensus tree was annotated using iTOL. This tree was used to interpret the evolutionary history of U-box proteins in the main text.</p> <p> </p> <p><em>MAFFT_alignment _1121seqs_Ubox_full_protein_plus_4seqs_RING_outgroup.fasta</em></p> <p>Multiple protein sequences alignment by MAFFT of 1121 U-box full length protein sequences and four RING finger protein sequences, FASTA formatted.</p> <p> </p> <p><em>MAFFT_alignment _1121seqs_Ubox_domain_plus_4seqs_RING_outgroup.fasta</em></p> <p>Multiple protein sequences alignment by MAFFT of U-box domain sequences of 1121 U-box protein and four RING finger domain sequences of outgroup sequences, FASTA formatted.</p> <p> </p> <p><em>Ubox_protein_sequences_information.xlsx</em></p> <p>Spreadsheet with sequence ID information and source databases.</p>
Vesuvio cGPS network – RINEX data quality control (2001 – 2019)
<p>For each cGPS station, the file contains a summary report with information about Rinex observation data. For each day, the summary line shows the following information:</p> <ol> <li>cGPS station name (Name),</li> <li>the start time of the window, the time format is year (Y), month (M), day (D), hour and minutes (Hour), day of year (DOY), modified Julian date (M J Date) and GPS week (Week),</li> <li>the end time of the window, the time format is year (Y), month (M), day (D), hour and minutes (Hour), day of year (DOY), modified Julian date (M J Date), and GPS week (Week),</li> <li>the start and end times of the window (time format is year month day hour min),</li> <li>window time laps (Hrs),</li> <li>observation interval (OI),</li> <li>the number of possible observations (#expt) above the elevation mask,</li> <li>the number of complete observations (#obs),</li> <li>the ratio of complete to possible observations as a percent (DCP),</li> <li>the RMS “multipath combinations” values MP1 and MP2, in meters, limited by the elevation mask (MP1, MP22) rounded to two decimal points,</li> <li>cycle slips (CS),</li> <li>the ratio of complete observations to cycle slips (obs/CS).</li> </ol> <p>A full description of cGPS network is reported in:<br> - De Martino P, Dolce M, Brandi G, Scarpato G, Tammaro U (2021). The Ground Deformation History of the Neapolitan Volcanic Area (Campi Flegrei Caldera, Somma–Vesuvius Volcano, and Ischia Island) from 20 Years of Continuous GPS Observations (2000–2019). Remote Sensing. 13(14):2725. doi:10.3390/rs13142725.</p> <p>Please cite this when using the dataset</p>
Campi Flegrei cGPS network – RINEX data quality control (2000 – 2019)
<p>For each cGPS station, the file contains a summary report with information about Rinex observation data. For each day, the summary line shows the following information:</p> <ol> <li>cGPS station name (Name),</li> <li>the start time of the window, the time format is year (Y), month (M), day (D), hour and minutes (Hour), day of year (DOY), modified Julian date (M J Date) and GPS week (Week),</li> <li>the end time of the window, the time format is year (Y), month (M), day (D), hour and minutes (Hour), day of year (DOY), modified Julian date (M J Date), and GPS week (Week),</li> <li>the start and end times of the window (time format is year month day hour min),</li> <li>window time laps (Hrs),</li> <li>observation interval (OI),</li> <li>the number of possible observations (#expt) above the elevation mask,</li> <li>the number of complete observations (#obs),</li> <li>the ratio of complete to possible observations as a percent (DCP),</li> <li>the RMS “multipath combinations” values MP1 and MP2, in meters, limited by the elevation mask (MP1, MP22) rounded to two decimal points,</li> <li>cycle slips (CS),</li> <li>the ratio of complete observations to cycle slips (obs/CS).</li> </ol> <p>A full description of cGPS network is reported in:<br> - De Martino P, Dolce M, Brandi G, Scarpato G, Tammaro U (2021). The Ground Deformation History of the Neapolitan Volcanic Area (Campi Flegrei Caldera, Somma–Vesuvius Volcano, and Ischia Island) from 20 Years of Continuous GPS Observations (2000–2019). Remote Sensing. 13(14):2725. doi:10.3390/rs13142725.</p> <p>Please cite this when using the dataset</p>
Ischia cGPS network – RINEX data quality control (2001 – 2019)
<p>For each cGPS station, the file contains a summary report with information about Rinex observation data. For each day, the summary line shows the following information:</p> <ol> <li>cGPS station name (Name),</li> <li>the start time of the window, the time format is year (Y), month (M), day (D), hour and minutes (Hour), day of year (DOY), modified Julian date (M J Date) and GPS week (Week),</li> <li>the end time of the window, the time format is year (Y), month (M), day (D), hour and minutes (Hour), day of year (DOY), modified Julian date (M J Date), and GPS week (Week),</li> <li>the start and end times of the window (time format is year month day hour min),</li> <li>window time laps (Hrs),</li> <li>observation interval (OI),</li> <li>the number of possible observations (#expt) above the elevation mask,</li> <li>the number of complete observations (#obs),</li> <li>the ratio of complete to possible observations as a percent (DCP),</li> <li>the RMS “multipath combinations” values MP1 and MP2, in meters, limited by the elevation mask (MP1, MP22) rounded to two decimal points,</li> <li>cycle slips (CS),</li> <li>the ratio of complete observations to cycle slips (obs/CS).</li> </ol> <p>A full description of cGPS network is reported in:<br> - De Martino P, Dolce M, Brandi G, Scarpato G, Tammaro U (2021). The Ground Deformation History of the Neapolitan Volcanic Area (Campi Flegrei Caldera, Somma–Vesuvius Volcano, and Ischia Island) from 20 Years of Continuous GPS Observations (2000–2019). Remote Sensing. 13(14):2725. doi:10.3390/rs13142725.</p> <p>Please cite this when using the dataset</p>
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
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OpenNeuro
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