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ShareScore release 0.9.0
Dataset results
97 results for “Quantitative trait loci”
Dataset for Quantitative Trait Loci Associated with Lodging, Stem Strength, Yield, and Other Important Agronomic Traits in Dry Field Peas with data for 196 markers
<p>Dataset for Quantitative Trait Loci Associated with Lodging, Stem Strength, Yield, and Other Important Agronomic Traits in Dry Field Peas with data for 196 markers. This file is associated with a dissertation on lodging resistance called Quantitative Trait Loci Associated with Lodging, Stem Strength, Yield, and Other Important Agronomic Traits in Dry Field Peas.</p>
High resolution imaging as a tool for identifying quantitative trait loci that regulate photomorphogenesis in Arabidopsis thaliana
<p>A primary component of seedling establishment is the photomorphogenic response as seedlings emerge from the soil. This process is characterized by a reduced growth rate in the hypocotyl, increased root growth, opening of the apical hook, and expansion of the cotyledons as photosynthetic organs. While fundamental to plant success, the photomorphogenic response can be highly variable. Additionally, studies of <i>Arabidopsis thaliana</i> are made difficult by subtle differences in growth rate between individuals. High-resolution imaging and computational processing have emerged as useful tools for quantification of such phenotypes. This study sought to: 1) develop an imaging methodology which could capture changes in growth rate as seedlings transition from darkness to blue light in real time, and 2) apply this methodology to single-QTL analysis using the Cvi x L<i>er</i> RIL mapping population. Significant differences in the photomorphogenic response were observed between the parent lines and analysis of 158 RILs revealed a wide range of growth rate phenotypes. QTL analysis detected significant loci associated with dark growth rate on chromosome 5 and significant loci associated with light growth rate on chromosome 2. Candidate genes associated with these loci, such as the previously characterized <i>ER</i> locus, highlight the application of this approach for QTL analysis. Genetic analysis of Landsberg lines without the <i>erecta </i>mutation also supports a role for ER in modulating the photomorphogenic response, consistent with previous QTL analyses of this population. Strengths and limitations of this methodology are presented, as well as means of improvement.</p>
Data from: Introgression study reveals two quantitative trait loci involved in interspecific variation in memory retention among Nasonia wasp species
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High resolution imaging as a tool for identifying quantitative trait loci that regulate photomorphogenesis in Arabidopsis thaliana
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Data from: Identification of X-linked quantitative trait loci affecting cold tolerance in Drosophila melanogaster and fine-mapping by selective sweep analysis
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Data from: Mixed linear model approach for mapping quantitative trait loci underlying crop seed traits
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Data from: Multiple quantitative trait loci influence intra-specific variation in genital morphology between phylogenetically distinct lines of Drosophila montana
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Data from: Healing quantitative trait loci in a combined cross analysis using related mouse strain crosses
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Data from: Quantitative trait loci for growth and body size in the nine-spined stickleback Pungitius pungitius L.
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Data from: CLIP test: a new fast, simple and powerful method to distinguish between linked or pleiotropic quantitative trait loci in linkage disequilibria analysis
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Data from: Generalized linear mixed models for mapping multiple quantitative trait loci
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Data from: Spatially and temporally varying selection on intrapopulation quantitative trait loci for a life history trade-off in Mimulus guttatus
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Data from: Quantitative trait loci from the host genetic background modulate the durability of a resistance gene: a rational basis for sustainable resistance breeding in plants
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Global transcript analysis of quantitative trait loci (QTL) associated with meat tenderness in pigs
GEO Series GSE75707. Sus scrofa. 32 samples. Type: Expression profiling by high throughput sequencing.
Genetic identification, replication, and functional fine-mapping of expression quantitative trait loci in primary human liver tissue [Agilent]
GEO Series GSE25935. Homo sapiens. 464 samples. Type: Expression profiling by array.
Abundant Quantitative Trait Loci for CpG Methylation and Expression Across Human Brain Tissues
GEO Series GSE15745. Homo sapiens. 1658 samples. Type: Expression profiling by array; Non-coding RNA profiling by array; Methylation profiling by array.
Genetic identification, replication, and functional fine-mapping of expression quantitative trait loci in primary human liver tissue [Illumina Expression Array]
GEO Series GSE28893. Homo sapiens. 60 samples. Type: Expression profiling by array.
Expression quantitative trait loci (eQTL) analysis of Brassica rapa under varying soil phosphorus (P) supplies
GEO Series GSE27052. Brassica; Brassica rapa. 170 samples. Type: Expression profiling by array.
Lens orientalis contributes quantitative trait loci and candidate genes associated with Ascochyta blight resistance in lentil
GEO Series GSE176412. Lens culinaris; Lens orientalis; Lens culinaris x Lens orientalis. 142 samples. Type: Expression profiling by high throughput sequencing; Genome variation profiling by high throughput sequencing; Other.
Genome-wide identification of expression quantitative trait loci (eQTLs) in human heart: genotyping
GEO Series GSE55230. Homo sapiens. 129 samples. Type: SNP genotyping by SNP array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.