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92 results for “Rumen”
Supplementary Data from Article : Digging into Digging into Sheep Feed Efficiency using Rumen and Plasma Metabolomic Data.
<p><strong>Figure S1. </strong>Results of the Partial-Least Square Regression Discriminant Analysis on Plasma metabolites measured during the CONC phase. Samples from phenotypically efficient and inefficient animals are represented in gold circles and blue diamonds respectively. Variables with VIP values higher than 1.5 for the whole model are represented in green, those with values belonging to [1,1.5] are represented in red and those with values lower than 1 are represented in black. BER for the whole model is calculated. <strong>Figure S2. </strong>Results of the Partial-Least Square Regression Discriminant Analysis on Plasma metabolites measured during the MIX phase. Samples from phenotypically efficient and inefficient animals are represented in gold circles and blue diamonds respectively. Variables with VIP values higher than 1.5 for the whole model are represented in green, those with values belonging to [1,1.5] are represented in red and those with values lower than 1 are represented in black. BER for the whole model is calculated. <strong>Figure S3. </strong>Results of the Partial-Least Square Regression Discriminant Analysis on Rumenmetabolites measured during the CONC phase. Samples from efficient and inefficient animals are represented in gold circles and blue diamonds respectively. Variables with VIP values higher than 1.5 for the whole model are represented in green, those with values belonging to [1,1.5] are represented in red and those with values lower than 1 are represented in black. <strong>Figure S4. </strong>Results of the Partial-Least Square Regression Discriminant Analysis on Rumen metabolites measured during the MIX phase. Samples from efficient and inefficient animals are represented in gold circles and blue diamonds respectively. Variables with VIP values higher than 1.5 for the whole model are represented in green, those with values belonging to [1,1.5] are represented in red and those with values lower than 1 are represented in black.</p>
Figure 6 from: Joshi A, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Griffith GW, Dagar SS (2018) Liebetanzomyces polymorphus gen. et sp. nov., a new anaerobic fungus (Neocallimastigomycota) isolated from the rumen of a goat. MycoKeys 40: 89-110. https://doi.org/10.3897/mycokeys.40.28337
Figure 6 The ITS1 based maximum-likelihood tree is showing the phylogenetic position of Liebetanzomycespolymorphus with nearest uncultured clones and other members of phylum Neocallimastigomycota. Bootstrap values (>50%) based on 500 replicates are indicated at branching points. The GenBank accession number of each strain is listed in parentheses. Scale bar: 0.5 substitutions per site.
Figure 5 from: Joshi A, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Griffith GW, Dagar SS (2018) Liebetanzomyces polymorphus gen. et sp. nov., a new anaerobic fungus (Neocallimastigomycota) isolated from the rumen of a goat. MycoKeys 40: 89-110. https://doi.org/10.3897/mycokeys.40.28337
Figure 5 The LSU based maximum-likelihood tree is showing the phylogenetic position of Liebetanzomycespolymorphus with other members of phylum Neocallimastigomycota. Bootstrap values (>50%) based on 500 replicates are indicated at branching points. The GenBank accession number of each strain is listed in parentheses. Scale bar: 0.1 substitutions per site.
Figure 4 from: Joshi A, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Griffith GW, Dagar SS (2018) Liebetanzomyces polymorphus gen. et sp. nov., a new anaerobic fungus (Neocallimastigomycota) isolated from the rumen of a goat. MycoKeys 40: 89-110. https://doi.org/10.3897/mycokeys.40.28337
Figure 4 Phase contrast (A, C, E, G), fluorescence (B, D, F, H) and confocal (I) microscopic images of Liebetanzomycespolymorphus showing elongate (A–B) and triangular (C–D) sporangium filled with zoospores. Nuclei were seen in sporangium but not in sporangiophore (B) or rhizoidal system (F, H, I). No constrictions were observed in rhizoids. Scanning electron microscopy images of elongate (J) and globose (K) sporangium showing monocentric thallus. Scale bar: 20 µM (A–I); 10 µM (J–K).
Figure 2 from: Joshi A, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Griffith GW, Dagar SS (2018) Liebetanzomyces polymorphus gen. et sp. nov., a new anaerobic fungus (Neocallimastigomycota) isolated from the rumen of a goat. MycoKeys 40: 89-110. https://doi.org/10.3897/mycokeys.40.28337
Figure 2 Microscopic features of Liebetanzomycespolymorphus showing pleomorphism in sporangial and rhizoidal structures, when grown on different carbon sources like rice straw (A), wheat straw (B), cellulose (C), xylan (D), starch (E), cellobiose (F), lactose (G), maltose (H), sucrose (I), glucose (J), xylose (K) and fructose (L). The exogenous sporangia appearing on a sporangiophore (A–B) and endogenous sporangia of different shapes (C–L) are shown. Scale bar: 20 µM.
Figure 3 from: Joshi A, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Griffith GW, Dagar SS (2018) Liebetanzomyces polymorphus gen. et sp. nov., a new anaerobic fungus (Neocallimastigomycota) isolated from the rumen of a goat. MycoKeys 40: 89-110. https://doi.org/10.3897/mycokeys.40.28337
Figure 3 Microscopic images of Liebetanzomycespolymorphus. On rice straw (A–F) sporangia of varying sizes and shapes, like elongate (A), ellipsoid (B), ovoid (C), clavate (E) and globose (F). The zoospore cyst (A–C arrowed) is also visible, highlighting bipolar germination. Sporangiophore of varying length and shape, from short to long (A), sometimes eggcup shaped (C) and constricted (E arrowed) is shown. The sporangia with a papilla (D arrowed) and septum (B, C, D, E starred) are also indicated. Sporangia and thalli of irregular morphology on xylose (G–I) and cellobiose (J–L), including some pseudo-intercalary sporangia (J–L) can be observed. Scale bar: 20 µM.
Figure 1 from: Joshi A, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Griffith GW, Dagar SS (2018) Liebetanzomyces polymorphus gen. et sp. nov., a new anaerobic fungus (Neocallimastigomycota) isolated from the rumen of a goat. MycoKeys 40: 89-110. https://doi.org/10.3897/mycokeys.40.28337
Figure 1 Macroscopic and microscopic features of Liebetanzomycespolymorphus. Colony morphology on agar roll tubes (A–C), showing the development of a colony attached (A) to a straw particle (arrowed), dense growth in the centre surrounded by numerous sporangia and zoospores (B–C) causing expansion of colony size. Growth in liquid medium showing a biofilm-like growth (D). Zoospores are spherical and Uniflagellate (E–F) or biflagellate (G). Germinating zoospore (H) showing a zoospore cyst (arrowed), presence and absence of sporangiophore indicating the endogenous and exogenous type of sporangial development (I) and different shapes of sporangia (I, J). Early stages of thallus development showing a single (K), bifurcated (L) and multifurcated (M) rhizoidal system. Scale bar: 1 mm (A–C); 10 µM (E–M).
Figures 10–18 in Rumen ciliate biota of water buffalo (Bubalus bubalis Linnaeus, 1758) in Kastamonu, Turkey
Figures 10–18. Photomicrographs of some rumen ciliates of the water buffaloes in Kastamonu, Turkey, after pyridinated silver carbonate impregnation. 10- Eudiplodinium dilobum from the left side, 11- Eu. rostratum from the left side, 12- Eu. maggii from the right side, 13- Ostracodinium gracile from the right side, 14- O. mammosum from the left side, 15- O. munham from the left side, 16- Epidinium ecaudatum m. ecaudatum from the left side, 17- E. ecaudatum m. caudatum from the left side, 18- E. ecaudatum m. bicaudatum from the right side. AP, Adoral polybrachykinety; DAP, dorsoadoral polybrachykinety; DP, dorsal polybrachykinety; VP, vestibular polybrachykinety.
Datasets to article: Full-fat insect meals in ruminant nutrition: in vitro rumen fermentation characteristics and lipid biohydrogenation
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Data from: Oral samples as non-invasive proxies for assessing the composition of the rumen microbial community
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Rumen bacteria, archaea and ciliate protozoa data from animal trial with Nordic Red dairy cows
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Data from: Bayesian modelling reveals host genetics associated with rumen microbiota jointly influence methane emission in dairy cows
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Effects of dietary forage and calf starter on ruminal pH and transcriptomic adaptation of the rumen epithelium in Holstein calves during the weaning transition
GEO Series GSE83813. Bos taurus. 7 samples. Type: Expression profiling by array.
Transcriptome differences in the rumen of beef steers with variation in feed intake and gain
GEO Series GSE71153. Bos taurus. 16 samples. Type: Expression profiling by high throughput sequencing.
Raw single-cell RNA sequencing data of adult rumen tissues
GEO Series GSE175652. Bos taurus. 3 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq analysis of differential gene expression in rumen papillae from Holstein Friesian bulls undergoing diet restriction and compensatory growth
GEO Series GSE89162. Bos taurus. 38 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq analysis of age-specific growth characteristics in the rumen of Hanwoo (Korean native cattle) steers
GEO Series GSE267733. Bos taurus. 61 samples. Type: Expression profiling by high throughput sequencing.
Rumen fluid miRNAome of dry cows transitioned from forage to 65% grain diet
GEO Series GSE195757. Bos taurus. 8 samples. Type: Non-coding RNA profiling by high throughput sequencing.
The grass–microbiome-rumen axis in grazing sheep farming intervened by supplementary feeding
GEO Series GSE278012. Ovis aries. 6 samples. Type: Expression profiling by high throughput sequencing.
RNA seq of ventral rumen wall of Australian sheep
GEO Series GSE81847. Ovis aries. 62 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.