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zenodo40/100

Fig. 1 in Influence of sun and shade conditions on Gratiana boliviana (Coleoptera: Chrysomelidae) abundance and feeding activity on tropical soda apple (Solanaceae) under field conditions

Fig. 1. Mean feeding damage score (± SE) for all 3 sampling dates caused by Gratiana boliviana beetles to tropical soda apple plants under 3 light conditions: unshaded, partially shaded, and shaded. Means with the same letter are not significantly different (P <0.05: Kruskal–Wallis, Dunn's test).

opencc-by-4.0Sep 2016View details →
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Рис. 1. Карта района иссΛеΑований. УсΛовные обозначения: красными кружками показаны базовые Λагеря; фиоΛетовой штриховкой — территория ΛанΑшафтного памятника прироΑы местного значения «ВΛасьевские торфяники»; синей штриховкой — акватория памятника прироΑы краевого значения «ЗаΛив Счастья с островами Кевор и Чаечный» Fig. 1. Map of the study area. Legend: red circles show base camps; purple shading — the territory of the landscape natural monument of local importance "Vlasyevsky Torfyaniky"; blue shading — the water area is a natural monument of regional significance "The Bay of Schastꞌе with the islands of Kevor and Chaechny" in New data on rare and insufficiently studied birds of the Shchastya Bay, the Sea of Okhotsk, and adjacent territories (Khabarovsk Krai)

Рис. 1. Карта района иссΛеΑований. УсΛовные обозначения: красными кружками показаны базовые Λагеря; фиоΛетовой штриховкой — территория ΛанΑшафтного памятника прироΑы местного значения «ВΛасьевские торфяники»; синей штриховкой — акватория памятника прироΑы краевого значения «ЗаΛив Счастья с островами Кевор и Чаечный» Fig. 1. Map of the study area. Legend: red circles show base camps; purple shading — the territory of the landscape natural monument of local importance "Vlasyevsky Torfyaniky"; blue shading — the water area is a natural monument of regional significance "The Bay of Schastꞌе with the islands of Kevor and Chaechny"

opencc-by-4.0Jul 2024View details →
zenodo40/100

Pelvic arcade and vertebral structure of the second chief specimen of Tyrannosaurus rex, Amer. Mus. 5027, discovered in 1908. An orthogonal projection executed on a very large scale and reproduced one-twelfth natural size. C 1-C 10 cervical series, D 1-D 13 dorsal or thoracic series, S 1-S 5 sacral series, Cd 1- Cd 53 caudal series. The caudals actually preserved are shaded; those drawn in outline are conjectural and restored. The total number of caudals is conjectural. in Skeletal Adaptations of Ornitholestes, Struthiomimus, Tyrannosaurus

Pelvic arcade and vertebral structure of the second chief specimen of Tyrannosaurus rex, Amer. Mus. 5027, discovered in 1908. An orthogonal projection executed on a very large scale and reproduced one-twelfth natural size. C 1-C 10 cervical series, D 1-D 13 dorsal or thoracic series, S 1-S 5 sacral series, Cd 1- Cd 53 caudal series. The caudals actually preserved are shaded; those drawn in outline are conjectural and restored. The total number of caudals is conjectural.

opencc-by-4.0Dec 1916View details →
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Text-fig. 3. CA climate charts for the Monte Tondo and Tossignano floras, showing climatic ranges of the Nearest Living Relatives of the fossil taxa with respect to MAT. Right-hand positoned large bold figures and shaded areas in each case indicate the Coexistence Interval, with the number of overlapping taxa being at a maximum. in Palaeoenvironmental Analysis Of The Messinian Macrofossil Floras Of Tossignano And Monte Tondo (Vena Del Gesso Basin, Romagna Apennines, Northern Italy)

Text-fig. 3. CA climate charts for the Monte Tondo and Tossignano floras, showing climatic ranges of the Nearest Living Relatives of the fossil taxa with respect to MAT. Right-hand positoned large bold figures and shaded areas in each case indicate the Coexistence Interval, with the number of overlapping taxa being at a maximum.

opencc-by-4.0Dec 2015View details →
zenodo40/100

Text-fig. 1. D&E tree of Endress and Doyle (2009), from the combined morphological and molecular analysis of Doyle and Endress (2000), with modifications based on more recent data, showing the inferred evolution of the reticulum grading character (39). Boxes under names of taxa indicate their character state; shading of branches indicates their reconstructed state based on parsimony optimization with MacClade (Maddison and Maddison 2003). Nymph = Nymphaeales, Aust = Austrobaileyales, Chlor = Chloranthaceae, Piper = Piperales, Ca = Canellales, Magnol = Magnoliales. in Early Cretaceous Monocots: A Phylogenetic Evaluation

Text-fig. 1. D&E tree of Endress and Doyle (2009), from the combined morphological and molecular analysis of Doyle and Endress (2000), with modifications based on more recent data, showing the inferred evolution of the reticulum grading character (39). Boxes under names of taxa indicate their character state; shading of branches indicates their reconstructed state based on parsimony optimization with MacClade (Maddison and Maddison 2003). Nymph = Nymphaeales, Aust = Austrobaileyales, Chlor = Chloranthaceae, Piper = Piperales, Ca = Canellales, Magnol = Magnoliales.

opencc-by-4.0Dec 2008View details →
zenodo40/100

Text-fig. 1: Distribution of Cenozoic volcanites (gray shaded areas) along the Ohře/Eger rift and the position of localities with Protothymallus elongatus (KRAMBERGER, 1885) including their K-Ar ages (from Bellon et al. 1998). in Revision Of The Cyprinids From The Early Oligocene Of The České Středohoří Mountains, And The Phylogenetic Relationships Of Protothymallus Laube, 1901 (Teleostei, Cyprinidae, Gobioninae)

Text-fig. 1: Distribution of Cenozoic volcanites (gray shaded areas) along the Ohře/Eger rift and the position of localities with Protothymallus elongatus (KRAMBERGER, 1885) including their K-Ar ages (from Bellon et al. 1998).

opencc-by-4.0Dec 2007View details →
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Figure 2. The adult female with a in Different shades of snake: Peculiar coloration in an urban population of the Grass Snake, Natrix natrix (Linnaeus, 1758

Figure 2. The adult female with a peculiar blue coloration. From the top to bottom: blue coloration present at the margin of the last row of dorsal scales and ventral scales. The white underside of the throat is clearly visible; Dorsal view of the individual; The ventral color switches from white to black towards the tail and the blue color intensifies.

opencc-by-4.0Feb 2021View details →
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Figure 1. A in Different shades of snake: Peculiar coloration in an urban population of the Grass Snake, Natrix natrix (Linnaeus, 1758

Figure 1. A melanistic individual (top) and an individual from the subspecies N. n. persa (middle). A common occurring individual with black spots behind the head (bottom) captured at the locality.

opencc-by-4.0Feb 2021View details →
zenodo40/100

FIGURE 6. Shaded coloured 3D in Elongated theropod tracks from the Cretaceous Apenninic Carbonate Platform of southern Latium (central Italy

FIGURE 6. Shaded coloured 3D photogrammetric model of footprint F1 and F2 with relative section (S4) passing through the metatarsal impression and digit III.

opencc-by-4.0Sep 2015View details →
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FIGURE 5. Shaded coloured 3D in Elongated theropod tracks from the Cretaceous Apenninic Carbonate Platform of southern Latium (central Italy

FIGURE 5. Shaded coloured 3D photogrammetric model of footprint F3 and relative sections (S1, S2, S3).

opencc-by-4.0Sep 2015View details →
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FIGURE 4. 1, Shaded grey 3D in Elongated theropod tracks from the Cretaceous Apenninic Carbonate Platform of southern Latium (central Italy

FIGURE 4. 1, Shaded grey 3D photogrammetric model of the track-bearing block; 2, Shaded coloured 3D photogrammetric model.

opencc-by-4.0Sep 2015View details →
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Digital Elevation Models from Planetary Flyby Images of Mercury and the Moon with Shape and Albedo from Shading

<p>Supplemantary material to Kr&uuml;ll, I., Wohlfarth, K., Tenthoff, M., W&ouml;hler, C., Galluzzi, V., Wright, J., Benkhoff, J., and Zender, J.: Shape and Albedo from Shading with Planetary Flyby Images of Mercury and the Moon, Europlanet Science Congress 2024, Berlin, Germany, 8&ndash;13 Sep 2024, EPSC2024-247, https://doi.org/10.5194/epsc2024-247, 2024.</p> <p><strong>Abstract</strong></p> <p>Surface reconstruction of planetary bodies such as the Moon and Mercury is crucial for geomorphological analysis, reflectance normalization, thermal modeling, rover landing site planning, and outreach activities. Stereo algorithms and Shape-and-Albedo-from-Shading (SAfS) are well-established methods for planetary 3D reconstruction. SAfS refines the surface slopes of a stereo Digital Elevation Model (DEM) and typically yields 3D models at image resolution. This approach is well-validated for scientifically calibrated instruments that observe the planetary body under favorable conditions. This work applied the SAfS algorithm to more challenging planetary flyby images acquired with uncalibrated off-the-shelf cameras. We investigated three scenarios: a fly-by image of the Moon captured by a GoPro during the Artemis I mission, a fly-by image of Mercury which was obtained with a monitoring camera during BepiColombo&rsquo;s third flyby, and a telescope image taken in Wetter, Germany. We qualitatively and quantitatively assessed the algorithm's performance. The results of the two flyby images indicate that, despite the challenging conditions, the SAfS algorithm could reconstruct the surface up to image resolution and increase the level of detail of the input DEM. The reconstructed DEM of the telescope image is the one with the lowest resolution. All in all, our flyby-derived DEMs are accurate. They provide excellent outreach products, as demonstrated by ESA's BepiColombo flyby movie: https://www.esa.int/Science_Exploration/Space_Science/BepiColombo/BepiColombo_s_third_Mercury_flyby_the_movie</p> <p><strong>Dataset<br></strong></p> <p>We applied the SAfS algorithm to different Regions of Interest (ROIs) in the flyby and telescope images. The ROIs are marked in Artemis_Flyby_ROIs.png, Bepicolombo_Flyby3_ROIs.png and Moon_Telescope_ROIs.png, respectively. For each ROI a DEM is provided centered on the latitude and longitude (0-360, positive east) in the filename. Furthermore a Red/ Blue Stereo anaglyph of the original image was created with the SAfS DEM (for this purpose the height has been exaggerated).</p> <p>&nbsp;</p>

opencc-by-4.0Aug 2024View details →
zenodo40/100

Data for Publication - Farmer Preferences and Selection Criteria for Shade Trees in Robusta Coffee Agroforestry Systems in Tshopo Province, DRC

<p>Data used for publication - "Farmer Preferences and Selection Criteria for Shade Trees in Robusta Coffee Agroforestry Systems in Tshopo Province, DRC"</p>

opencc-by-4.0Oct 2024View details →
zenodo40/100

Linked collectors and determiners for: A whiter shade of pale: anchoring the name Paecilaema C. L. Koch, 1839 onto a neotype (Opiliones, Cosmetidae).

Natural history specimen data linked to collectors and determiners held within, "A whiter shade of pale: anchoring the name Paecilaema C. L. Koch, 1839 onto a neotype (Opiliones, Cosmetidae)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/d2d146be-d297-4c55-a744-c51d71221e78">https://bionomia.net/dataset/d2d146be-d297-4c55-a744-c51d71221e78</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/d2d146be-d297-4c55-a744-c51d71221e78">https://gbif.org/dataset/d2d146be-d297-4c55-a744-c51d71221e78</a>. Formatted as a Frictionless Data package.

opencc-zeroMay 2024View details →
dryad40/100

Data from: Native shade trees aid bird conservation in tea plantations in southern India

<p>In the Western Ghats, India, we study how different intensities of tea cultivation influence birds. We compared bird communities in conventional monoculture tea and mixed-shade tea plantations, both of which use agrochemicals, with organic tea plantations, a rainforest fragment, and continuous rainforest within the Anamalai Tiger Reserve. In 225 point count surveys, overall bird species richness and abundance were lowest in conventional tea and up to 33% higher in organic tea. Mixed-shade tea had 40% higher species richness (including 15 canopy and 4 shrub and mid-storey species – primarily frugivores, nectarivores and insectivores), and 83% higher bird abundance than conventional tea, with a greater proportion of forest-affiliated birds and similarity in species composition with forest sites. The rainforest fragment and continuous rainforest had a higher proportion, richness and abundance of forest-affiliated birds and fewer open-country birds, unlike tea plantations where the pattern was reversed. Habitat associations of 62 bird species in indicator species analysis revealed similar patterns. Thus organic tea is better than conventional tea for birds, but mixed-shade tea is even better, although still poorer than forests. Retaining or promoting native shade trees in tea plantations will increase bird diversity and abundance, including of forest-affiliated species and support landscape-level bird conservation.</p>

opencc-zeroJul 2021View details →
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Text-fig. 2. Skeletal scheme of a woolly mammoth (Abel 1925) with preserved bone material of the Ahlen specimen shaded. in Everything Is A Question Of Time - Age Of Important Quaternary Palaeontological Finds From Westphalia

Text-fig. 2. Skeletal scheme of a woolly mammoth (Abel 1925) with preserved bone material of the Ahlen specimen shaded.

opencc-by-4.0Dec 2017View details →
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Text-fig. 6. Metacheiromys marshi, AMNH 131777, left petrosal isosurface from CT scans in endocranial view. a – shaded drawing; b – line drawing with labels. Abbreviations: app – apex partis petrosae, cc – cochlear canaliculus, crp – crista petrosa, cs – cerebral surface, iam – internal acoustic meatus, lji – lateral jugular incisure, me – mastoid exposure, mji – medial jugular incisure, saf – subarcuate fossa, sips – sulcus for inferior petrosal sinus, soev – sulcus for occipital emissary vein, sss – sulcus for sigmoid sinus, tc – transverse crest, to ptc – to posttemporal canal, va – vestibular aqueduct. in Skeletal Anatomy Of The Basicranium And Auditory Region In The Metacheiromyid Palaeanodont Metacheiromys (Mammalia, Pholidotamorpha) Based On High-Resolution Ct Scans

Text-fig. 6. Metacheiromys marshi, AMNH 131777, left petrosal isosurface from CT scans in endocranial view. a – shaded drawing; b – line drawing with labels. Abbreviations: app – apex partis petrosae, cc – cochlear canaliculus, crp – crista petrosa, cs – cerebral surface, iam – internal acoustic meatus, lji – lateral jugular incisure, me – mastoid exposure, mji – medial jugular incisure, saf – subarcuate fossa, sips – sulcus for inferior petrosal sinus, soev – sulcus for occipital emissary vein, sss – sulcus for sigmoid sinus, tc – transverse crest, to ptc – to posttemporal canal, va – vestibular aqueduct.

opencc-by-4.0Dec 2019View details →
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Text-fig. 8. Line drawings of third molars from the upper part of the Nagri Formation; 8a–b and 8e–g are referred to Karnimata fejfari, 8c and 8h are referred to Progonomys hussaini, and 8d represents Progonomys morganae. a) left m3 YGSP 34573, b) right m3 YGSP 34568, c) right m3 YGSP 34574, d) left M3 YGSP 34033 from Y 259, e) right M3 YGSP 34595, f) right M3 YGSP 34596, g) right M3 YGSP 33197 from Y 450, h) right M3 YGSP 34597. All teeth drawn to same scale, anterior is upward; black shading represents dentine exposed by wear; hatching on 8d represents breakage. in Early Late Miocene Murine Rodents From The Upper Part Of The Nagri Formation, Siwalik Group, Pakistan, With A New Fossil Calibration Point For The Tribe Apodemurini (Apodemus/Tokudaia)

Text-fig. 8. Line drawings of third molars from the upper part of the Nagri Formation; 8a–b and 8e–g are referred to Karnimata fejfari, 8c and 8h are referred to Progonomys hussaini, and 8d represents Progonomys morganae. a) left m3 YGSP 34573, b) right m3 YGSP 34568, c) right m3 YGSP 34574, d) left M3 YGSP 34033 from Y 259, e) right M3 YGSP 34595, f) right M3 YGSP 34596, g) right M3 YGSP 33197 from Y 450, h) right M3 YGSP 34597. All teeth drawn to same scale, anterior is upward; black shading represents dentine exposed by wear; hatching on 8d represents breakage.

opencc-by-4.0Aug 2017View details →
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FIG. 77. Male terminalia, A. humeralis Loew. A. Epandrium and cerci. Subepandrial sclerite shaded. B. Ejaculatory apodeme. C in Revision Of The Nearctic Species Of The Genus Amiota Loew (Diptera: Drosophilidae)

FIG. 77. Male terminalia, A. humeralis Loew. A. Epandrium and cerci. Subepandrial sclerite shaded. B. Ejaculatory apodeme. C. Lateral view of hypandrium and paraphyses. D. Aedeagal apodeme. E. Posterior view of hypandrium and paraphyses. F. Surstyli and subepandrial sclerite, inner view. (Am 324).

opencc-by-4.0Sep 2022View details →
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MicroCT scans of sun and shade grown leaves of Cabernet Sauvignon and Blaufränkisch grapevine (Vitis vinifera L.) cultivars

<p>Image data set of sun and shade-grown leaves of Cabernet Sauvignon (CS) and Blaufr&auml;nkisch (BF) grapevine (Vitis vinifera L.) cultivars.</p> <p>When using this dataset, please cite:</p> <blockquote> <p>Th&eacute;roux-Rancourt G, Herrera C, Voggeneder K, Luijken N, Nocker L, Savi T, Scheffknecht S, Schneck M, Tholen D. (accepted) Analyzing anatomy over three dimensions unpacks the differences in mesophyll diffusive area between sun and shade Vitis vinifera leaves. AoB Plants</p> </blockquote> <p>&nbsp;</p> <p><strong>Data acquisition methodology</strong></p> <p>Plants were brought to the TOMCAT tomographic beamline of the Swiss Light Source at the Paul Scherrer Institute (Villigen, Switzerland) in pots (Cabernet Sauvignon (CS)) or as cut shoots with the cut end placed in water (Blaufr&auml;nkisch (BF)). Before scanning, a leaf was cut from the stem and a thin strip of ~1.5 mm width and 1.5 cm length was cut in between apparent higher-order veins, immediately wrapped in polyimide tape and inserted into a styrofoam block glued with wax onto a holder. Three (CS) or two (BF) strips were cut at different locations on the leaf surface to ensure within-leaf replications and to get better leaf-level averages. The strip was immediately scanned by imaging 1801 projections of 100 ms under a beam energy of 21 keV and magnified using a 40x (CS) or 20x (BF) objective, yielding respective final voxel sizes of 0.1625 &micro;m (field of view: ~416x416x312 &micro;m) and 0.325 &micro;m (field of view: ~832x832x624 &micro;m). Scanned projections were reconstructed to cross-sectional view using both absorption (gridrec; Marone <em>et al.</em> 2012) and phase contrast enhancement (Paganin <em>et al.</em> 2002) reconstructions.</p> <p><br> <br> <strong>Dataset description</strong></p> <p>After aligning the stacks to be parallel to the image edges using ImageJ (Schneider <em>et al.</em> 2012), at least nine slices were hand labeled using a graphics pen display tablet to precisely segment the background, the epidermis, and the vasculature. The mesophyll cells and the intercellular airspace were segmented by thresholding each absorption and phase contrast scan to maximize airspace volume (background) and taking care to avoid false segmentation within the cells&nbsp; (i.e. false segmentation of airspace). The hand-labeled slices were then used to automatically segment the whole stack using a Python-based random-forest machine learning approach (Th&eacute;roux-Rancourt, Jenkins, <em>et al.</em> 2020).</p> <p>&nbsp;</p> <p><strong>File naming convention</strong></p> <p>For all stacks, files start with:<br> <em>Cultivar_Treatment_Plantn_leaf_N_</em></p> <ul> <li>Cultivar: <em>CS</em> for Cabernet Sauvignon, <em>BF</em> for Blaufr&auml;nkisch</li> <li>Treatment: <em>Sun</em> for plants grown under high light, <em>Shade</em> for plants grown under low light</li> <li>Plantn: Plant number; 1-6 for CS, 1-5 for BF</li> <li>leaf: Leaf number; 1-4</li> </ul> <p><em>N</em> specifies the type of stack:</p> <ul> <li><em>GRID</em> (gridrec reconstruction)</li> <li><em>PAGANIN</em> (phase contrast enhancement reconstruction)</li> <li><em>labelled-stack</em> (hand labeled slices / ground truth; stacks have been hand labeled in cross-sectional view.)</li> <li><em>SEGMENTED</em> (automatically segmented stack using random-forest machine learning approach)</li> <li><em>STOMATAL_REGIONS_BBOX_CROPPED</em> (Stack with individually segmented stomatal vaporsheds, i.e. airspace closest to a stoma. The stack has been cropped in paradermal view around the stomata closest to the stack&#39;s edges, i.e. a bounding box (BBOX) with stomatal vaporsheds fully enclosed).</li> </ul> <p>All stacks are provided as 8-bit grayscale TIF files. Stacks have been hand labeled in cross-sectional view.</p> <p>&nbsp;</p> <p><strong>Plant material and growth conditions </strong></p> <p>The experiment was carried out over two consecutive years, in 2018 and 2019, at the facilities of BOKU UFT (Tulln, Austria). In the first year, rooted grafts of <em>Vitis vinifera </em>&lsquo;Cabernet Sauvignon&rsquo; (clone 191E) on 101-14 rootstock (hereafter named CS) were acquired from a local nursery (<em>Reben Iby</em>, Neckenmarkt, Austria). In the second year, rooted grafts of <em>Vitis vinifera </em>&lsquo;Blaufr&auml;nkisch&rsquo; (clone 13-3 GM) on 5 BB rootstock (hereafter named BF) were acquired from the same nursery. Blaufr&auml;nkisch is known to have originated from Lower Styria (present day Styria, Slovenia, Maul <em>et al. </em>2016) and to be genetically different from Cabernet Sauvignon (Magris <em>et al. </em>2021), which originated in the Bordeaux region in France.</p> <p>The rooted grafts were planted in 7-L pots and allowed to grow in a glasshouse without any environmental control. For CS, nutrient-rich, sieved vineyard soil mixed with perlite (3:1 ratio) was used, while for BF pots were filled with commercial pot substrate containing slow release fertilizer (10 g pot-1, 15-5-20 NPK &ldquo;Entec vino&rdquo;). Pots were watered to pot capacity automatically every day. Clones were planted June 1 and April 1 in the first and second year, respectively. When all the plants had at least three mature leaves on one shoot, plants were pruned so that only one dominant shoot remained. To ensure that only leaves fully developed under different light conditions were used for further analyses, the last developing leaf below the tip was marked before moving half of the plants to the shaded environment (on June 29, 2018 for CS and on April 18, 2019 for BF). For the shade treatment, a tent of about 2 m (height) x 1.5 m (width) x 1.5 m (depth) was made from black polypropylene cloth (HaGa-Welt GmbH &amp; Co. KG, Elze, Germany), resulting in a 60% reduction in photosynthetic photon flux density (PPFD). A spectrometer (FLAME-S-VIS- ES, Ocean Optics Inc. Largo, USA) was used to confirm that under both light conditions, relative differences in the contribution of red, green blue and far-red light to the total PPFD were below 5% (i.e. spectrally neutral shade).</p> <p>During the week before synchrotron microCT scanning (last week of August in 2018 and first week of September in 2019), one mature leaf per plant was selected at least three leaves above the previously mentioned mark indicating the last developing leaf at the start of the shade treatment. The measured leaves were estimated to be about one month old, resulting in an average daily light integral (DLI) of 30 (CS sun), 12 (CS shade), 24 (BF sun), and 10 (BF shade) mol m<sup>-2</sup> day<sup>-1</sup>. These estimates were computed using solar radiation measured at a weather station a few meters from the glasshouse, and using PPFD values measured inside the glasshouse. Average daily PPFD was below 700 &mu;mol m<sup>-2</sup> s<sup>-1</sup> under full light, with maximum recorded values at leaf level of ~1200 &mu;mol m<sup>-2</sup> s<sup>-1</sup> under full light and ~500 &mu;mol m<sup>-2&nbsp;</sup>s<sup>-1</sup> under shade, i.e. ~60% reduction.</p> <p>&nbsp;</p> <p><strong>References</strong></p> <p><strong>Marone F, Stampanoni M</strong>. <strong>2012</strong>. Regridding reconstruction algorithm for real-time tomo- graphic imaging. <em>J. Synchrotron Radiat. </em><strong>19</strong>: 1029&ndash;1037.</p> <p><strong>Paganin D, Mayo SC, Gureyev TE, Miller PR, Wilkins SW</strong>. <strong>2002</strong>. Simultaneous phase and amplitude extraction from a single defocused image of a homogeneous object. <em>J. Microsc. </em><strong>206</strong>: 33&ndash;40.</p> <p><strong>Schneider CA, Rasband WS, Eliceiri KW</strong>. <strong>2012</strong>. NIH Image to ImageJ: 25 years of image analysis. <em>Nat. Methods </em><strong>9</strong>: 671&ndash;675.</p> <p><strong>Th&eacute;roux-Rancourt G, Jenkins MR, Brodersen CR, McElrone A, Forrestel EJ, Earles JM</strong>. <strong>2020</strong>. Digitally deconstructing leaves in 3D using X-ray microcomputed tomography and machine learning. <em>Appl. Plant Sci. </em><strong>8</strong>: e11380.</p>

opencc-by-4.0Feb 2022View details →

ScienceDex guides

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record