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7,877 results for “Supplementary material”
The ecological niche and distribution of Neanderthals during the Last Interglacial [supplementary materials]]
<p>Supplementary material of the paper: Benito, B.M., Svenning, J.‐C., Kellberg‐Nielsen, T., Riede, F., Gil‐Romera, G., Mailund, T., Kjaergaard, P.C. and Sandel, B.S. (2017), The ecological niche and distribution of Neanderthals during the Last Interglacial. J. Biogeogr., 44: 51-61. <a href="https://doi.org/10.1111/jbi.12845">https://doi.org/10.1111/jbi.12845</a></p> <p>Files:</p> <p>- average_habitat_suitability.tif: geotif file describing the average habitat suitability (computed from a large ensemble of small models) for Homo neanderthalensis during the last interglacial.</p> <p>- standard deviation.tif: geotif with the standard deviation of the ensemble of small models mentioned above. Large values indicate a low consensus among models, while small values indicate a high consensus among models.</p> <p>- suitability_and_deviation.pdf: plot of the two previous maps blended through "whitening". Colors indicate habitat suitability, while "whitening" indicates higher standard deviation (lack of consensus).</p> <p>- neanderthal_eemian_sites_Appendix_I.xlsx: input dataset used to fit the models.</p>
Supplementary material for "Song et al., Modelling Simul. Mater. Sci. Eng., 2021: Data-mining of dislocation microstructures: concepts for coarse-graining of internal energies"
<p>This zip archive contains supplementary material in the form of datasets and jupyter notebooks that are used in the following publication:</p> <ul> <li>authors: Hengxu Song, Nina Gunkelmann, Giacomo Po, and Stefan Sandfeld</li> <li>journal: Modelling Simul. Mater. Sci. Eng.</li> <li>year: 2021</li> <li>title: Data-mining of dislocation microstructures: concepts for coarse-graining of internal energies</li> </ul>
Supplementary Material: "A Density-Based Algorithm for the Detection of Individual Trees from LiDAR Data"
<p><strong>Supplementary Material</strong></p> <p>This material regards the paper entitled "<em>A Density-Based Algorithm for the Detection of Individual Trees from LiDAR Data</em>".</p> <p>The Readme.txt file explains all the contents of the data package, which consists of the data supporting the paper and the MATLAB script for the Individual Tree Detection and Measurement (ITDM).</p> <p>Please cite the related article if using the data or the script.</p> <p>Latella, M., Sola, F., & Camporeale, C. (2021). A Density-Based Algorithm for the Detection of Individual Trees from LiDAR Data. Remote Sensing, 13(2), 322.</p>
Supplementary material for "Decomposing fecundity and evaluating demographic influence of multiple broods in a migratory bird"
<p>Data and code files used in the paper. The four data files are provided in ASCII format (marr_S.TXT, broods_S.TXT, marr_G.TXT, broods_G.TXT). The code file (script_IPM_wryneck_Tenan_etal.txt) is a space delineated text file. The code file is written for R, but models are run in NIMBLE from R. The code file also contains the description of the data files and code for data management.</p>
Supplementary Material for "Sequence Comparison in Historical Linguistics"
<p>This is the official version of the supplementary material which was used as the basis for the study on "Sequence Comparison in Historical Linguistics" (List, Düsseldorf, Düsseldorf University Press).</p>
Supplementary material accompanying "Factoring lexical and phonetic phylogenetic characters from word lists"
<p>This repository contains the scripts and the data that were used to run the analyses for the paper "Factoring lexical and phonetic phylogenetic characters from word lists". For details, please refer to the README.md file provided along with the dataset. If you run into problems replicating the analysis, please do not hesitate to contact the authors.</p>
Supplementary material 3: World Spider Catalog Bibliographic Data: Treatments from: Integrating and visualizing primary data from prospective and legacy taxonomic literature - Biodiversity Data Journal 3: e5063 (12 May 2015) https://doi.org/10.3897/BDJ.3.e5063
List of journal/publisher by ranked by treatment count exported from the World Spider Catalog 14 October 2014 with total treatments by source, cumulative treatments, and cumulative proportion of treatments.
Supplementary material 2: World Spider Catalog Bibliographic Data: Publications from: Integrating and visualizing primary data from prospective and legacy taxonomic literature - Biodiversity Data Journal 3: e5063 (12 May 2015) https://doi.org/10.3897/BDJ.3.e5063
Ranked list of journal/publisher exported from the World Spider Catalog 14 October 2014 with total articles by source, cumulative articles, and cucmulative proportion of articles.
Sketches and Diagrams in Practice — Supplementary Material
<p>Sketches and diagrams play an important role in the daily work of software developers. In our paper "Sketches and Diagrams in Practice" we present the results of our <strong>research on the usage of sketches and diagrams in software engineering practice</strong>. We focused especially on their relation to the core elements of a software project, the source code artifacts. Furthermore, we wanted to assess how helpful sketches are for understanding the related source code. We intended to find out if, how, and why sketches and diagrams are archived and are thereby available for future use. Software is created with and for a wide range of stakeholders. Since sketches are often a means for communicating between these stakeholders, we were not only interested in sketches and diagrams created by software developers, but by all software practitioners, including testers, architects, project managers, as well as researchers and consultants. In a <strong>survey with 394 software ‘practitioners’</strong>, we mainly asked questions about the the last sketch or diagram that they had created. Contrary to our expectations and previous work, the majority of sketches and diagrams contained at least some UML elements. However, most of them were informal. The most common purposes for creating sketches and diagrams were designing, explaining, and understanding, but analyzing requirements was also named often. More than half of the sketches and diagrams were created on analog media like paper or whiteboards and have been revised after creation. Most of them were used for more than a week and were archived. About half of the sketches were rated as helpful to understand the related source code artifact(s) in the future. Our study complements a number of existing studies on the use of sketches and diagrams in software development, which analyzed the above aspects only in parts and often focused on an academic environment, a single company, open source projects, or were limited to a small group of participants.</p> <p>The questionnaire for the online survey was online from August 28, 2013 until December 31, 2013. Further information on our research design and research questions can be found in the referenced paper. This dataset contains the questionnaire, the data we collected during this survey, and a basic R script that can be used as a starting point for validating our results and further exploring the data. This data set has been reviewed and accepted by the Artifact Evaluation Committee of FSE 2014. Since we assured our participants that their data is handled confidentially, only the quantitative data is directly available here. If you are also interested in the qualitative data from our survey, don’t hesitate to contact the authors.</p>
Supplementary materials for: How effective are insect aposematism and Batesian mimicry in deterring a wild avian predator?
<p><strong><a name="_Hlk180513890"></a>Acoustic_parameters_10cm.txt</strong><br>Acoustic parameters of the sounds produced by insects in flight, species recorded at 10 cm from the microphone.</p> <p><strong>Acoustic_parameters_5cm.txt<br></strong>Acoustic parameters of the sounds produced by insects in flight, species recorded at 5 cm from the microphone.</p> <p><strong>Robin_behaviours.txt</strong> <br><em>Erithacus rubecula</em> reactions measured in Boris software from videos of behavioural experiments.</p> <p><strong>Rscript_robin_behaviours.R</strong><br>R script used for the analysis of robins’ behaviours (using Robin_behaviours.txt).</p> <p><strong>Rscript_acoustical_analyses.R</strong><br>R script used for the analysis of acoustical parameters of insect buzzing sounds (using Acoustic_parameters_10cm.txt and Acoustic_parameters_5cm.txt).</p> <p><strong>Robin_experiment_video.mp4<br></strong>Behavioural experiment with a wild European robin (<em>Erithacus rubecula</em>) in its habitat. A freshly defrosted insect specimen and the corresponding buzzing sound of each recorded hymenopteran model and lepidopteran mimic (plus a housefly as a control) were presented in random order to the robin at a feeder with <em>Tenebrio molitor</em> larvae.</p> <p><strong>Robin_experiment_video_Metadata.docx</strong><br><span>Metadata for the supplementary video Robin_experiment_video.mp4.</span></p>
Supplementary material - Optical Diffraction Tomography and Raman Confocal Microscopy for the Investigation of Vacuoles Associated with Cancer Senescent Engulfing Cells
<p>Supplementary material containing the data used in the manuscript "Optical Diffraction Tomography and Raman Confocal Microscopy for the Investigation of Vacuoles Associated with Cancer Senescent Engulfing Cells"</p>
Supplementary Material - The conservation status of the Cretan Endemic Arthropods under Natura 2000 network
<p>Arthropod decline has been globally and locally documented, yet they are still not sufficiently protected. Crete (Greece), a Mediterranean biodiversity hotspot, is a continental island renowned for its diverse geology, ecosystems and endemicity of flora and fauna, with continuous research on its Arthropod fauna dating back to the 19th century. Here we investigate the conservation status of the Cretan Arthropods using Preliminary Automated Conservation Assessments (PACA) and the overlap of Cretan Arthropod distributions with the Natura 2000 protected areas. Moreover we investigate their endemicity hotspots and propose candidate Key Biodiversity Areas. In order to perform these analyses, we assembled occurrences of the endemic Arthropods in Crete located in the collections of the Natural History Museum of Crete together with literature data. These assessments resulted in 75% of endemic Arthropods as potentially threatened. The hotspots of endemic taxa and the candidate Key Biodiversity Areas are distributed mostly on the mountainous areas where the Natura 2000 protected areas have great coverage. Yet human activities have significant impact even in those areas, while some taxa are not sufficiently covered by Natura 2000. These findings call for countermeasures and conservation actions.</p> <p><strong></strong><br>The code is available here <a href="https://github.com/savvas-paragkamian/arthropods_assessment_crete">https://github.com/savvas-paragkamian/arthropods_assessment_crete</a> and a zipped version of the repository is included here (arthropods_assessment_crete-1.2.0.tar). </p> <p>Supplementary Material 1 is the Supplementary-material-1.xlsx file which contains the Arthropod occurrences as compiled from the literature and the specimens of the NHMC. In addition all references of the literature are included in a separate sheet.</p> <p>Supplementary Material 2 1 is the Supplementary-material-2.docx which contains two (2) supplementary figures and two (2) supplementary tables.</p> <p> </p>
Supplementary Material 4 (Spatio-temporal metabolic rifts in urban construction material circularity)
<p>This video map shows the relative changes in environmental impacts at different locations per year for 2017-2050.</p>
Supplementary Material 1-3 (Spatio-temporal metabolic rifts in urban construction material circularity)
<p>Dataset 1 contains life cycle impact factors used for each stage of the urban metabolism for all spatial levels.</p> <p>Dataset 2 contains the transport distances and modes from supplier locations for all spatial levels.</p> <p>Dataset 3 contains material flow and life cycle impact assessment results for each year (2017-2050) and all spatial levels.</p>
Data and supplementary material used for Soundscapes to Landscapes soundscape mapping
<p>This repository contains supporting data products to enable the soundscape mapping outlined in the associated publication (DOI forthcoming). Data were used to extract acoustic recording location environmental data for training random forest models to spatially predict 2021 ecoacoustic metrics. The accompanying code will be linked to the GitHub repository. Files include:</p> <p>Data:</p> <ul> <li>clustered_fold_k10.rsd: indices of the model data used if geoCV approach</li> <li>extracted_predictors_vif3.csv: site-specific predictor values extracted from predictors_annual_20230223.tif</li> <li>final_predictors_vif3.csv: a two column table summarizing the VIF selected predictors</li> <li>final_sites_2017-2021.csv: the list of 1,195 potential sites</li> <li>predictor_sprmn_corr.csv: correlation matrix for predictors in model data</li> <li>predictors_annual_20230223.tif: all predictors </li> <li>response_df_200623.csv: site level ecoacoustic metrics</li> </ul> <p>Results:</p> <ul> <li>map_correlations.tar: pairwise response map correlations</li> <li>pdps.tar: partial dependence plot data</li> <li>performance.tar: model performance summaries</li> <li>predictions_maps.tar: final median and IQR model prediction surfaces</li> <li>variable_importance.tar: summaries for variable importance analyses</li> </ul> <p>Contact Colin Quinn at cq73@nau.edu for questions related to this repository or the underlying work. Original wav recordings are expected to be made publicly available on the NASA DAACs in the near future. </p>
Supplementary materials for "Experimental verification for self-organization process on the spatial distribution and edifice size of rootless cone"
<p>This is a ReadMe for the supplementary material for "Experimental verification for self-organization process on the spatial distribution and edifice size of rootless cone" written by Rina Noguchi and Wataru Nakagawa.</p> <p>----------------------<br>[ReadMe.txt]<br>ReadMe text file.</p> <p>[FigS1.png]<br>This figure is a supplementary figure which appeared as "Figure S1" in the main text.<br>Caption: Figure S1. Examples of conduits (dashed green lines) and loser conduits (solid magenta lines) were observed in the experiments with original and contrast-enhanced images.</p> <p>[FigS2.png]<br>This figure is a supplementary figure which appeared as "Figure S2" in the main text.<br>Caption: Figure S2. Relationships between the thickness of poured heated syrup and (A) mass losses caused by baking soda decomposition, (B) number of conduits, (C) total conduit area, (D) average conduit area, (E) number of failed conduits, and (F) sum number of conduits and failed conduits. Each plot and error bar represents the average and standard deviation in three repeated experiments, respectively. The red plots and error bars show the 350 g of heated syrup case, which performed ten repeated experiments to verify the reproducibility. Note that horizontal error bars are derived from the difficulty of strict heated syrup-pouring control.</p> <p>[Experimental_datasheet.xlsx]<br>This EXCEL file includes two sheets: a mass loss change log and a summary of experimental results.</p> <p>[movie/SSS_X_x15.mp4]<br>These MP4 files are fast-forward movies (x15) for each experiment. SSS = the amount of poured hearty syrup (g), and X = round in each condition.<br>----------------------</p> <p>For more details, please refer to a research paper "Experimental verification for self-organization process on the spatial distribution and edifice size of rootless cone".</p> <p>If you have any questions, please send an e-mail to:<br>r-noguchi@env.sc.niigata-u.ac.jp<br>or<br>flugel555@gmail.com<br>.<br>(R. Noguchi)</p>
The price of safety: Order picking in warehouses with in-house traffic regulations (Supplementary material)
<p>In what follows, you will find the code and results of the paper:</p> <p>"The price of safety: Order picking in warehouses with in-house traffic regulations" published in IISE Transactions.</p> <p> </p> <p>List of files:</p> <p>- Zip file: "Order Picking Problem with in-house traffic regulations" containing C# Code used to generate solutions for all safety policies</p> <p>- Result.csv containing all generated results</p> <p>- createPlots.py containing code to generate figures and tables from the paper</p> <p> </p> <p>The C# code is object-oriented and contains a Main function in the Program.cs file that converts the Example.OPP file with the InstanceReaders to an OPPInstance and uses the Solve function from either the DynamicProgrammic.cs or RuralPostman.cs file to solve the OPPInstance with all the TrafficRegulations as described in the paper.</p> <p> </p> <p>The Example.OPP defines the Depot location (0: decentral, 1: central), AisleLength, i.e. the number of pick positions within each aisle, and other dimensions of the warehouse. Finally, the items are defined by their picking aisle, shelf, position in the shelf, and region.</p> <p> </p> <p>The dynamic program (DP) described in the paper is implemented in DynamicProgrammic.cs. A HashSet of DPNode represents each layer of the DP. A DPNode basically consists of components, nodeDegrees, and a value. Depending on the TrafficRegulation the nodeDegrees are either NodeDegreeClassic, i.e. Null, Uneven, or Even, or NodeDegreeInAndOutDifference, i.e. the difference of the in- and out-degree. To construct the solution at the end, the inEdge is also saved for each DPNode and the additional member depotIsConnected ensures that the depot is visited. The DPNodes in the next layer of the DP are created by the functions MakeNextLayerVertical and MakeNextLayerHorizontal by determining all possibleTransitions per node in the current layer and combining them into a newNode. Products are stored with their position on the shelves in the item list within a PickingAisle. All vertical possibleTransitions are determined in a preprocessing step depending on the TrafficRegulations and are saved within the respective PickingAisle. All horizontal possibleTransitions are determined during the DP with specific functions depending on the TrafficRegulation in HorizontalTransition.cs. When the layers are created, the best feasible DPNode per layer is saved and the best one, i.e. the one with the lowest value, is returned at the end.</p> <p> </p> <p>The paper describes that certain safety policies cannot be solved with the DP. These OPPInstances are solved as a RuralPostman problem (RPP) by generating a Graph that adopts the rectangular structure of the warehouse. Within the Graph, requiredEdges are determined that correspond to PickingAisles containing items. The resulting RPP can be transformed into a traveling salesman problem (TSP) as described by applying an arc-oriented Dijkstra or, in certain cases, to a generalized TSP (GTSP) where one of the two directed edges must be visited. If necessary, the GTSP is transformed to an asymmetric TSP in GTSPInstance and then solved with TSPSolver using LKH-3.exe (Helsgaun 2017, http://webhotel4.ruc.dk/~keld/research/LKH-3/). To use LKH-3.exe, the TSP instance is saved in a TSPLIB format and a parameter file (.par) for LKH and a solution file (.sol) are created in the bin folder. These files are named according to the name specified in the instance.Solve function, where one can also choose to save or delete these files afterward.</p> <p> </p> <p>For more information on LKH-3 see: Keld Helsgaun: An Extension of the Lin-Kernighan-Helsgaun TSP Solver for Constrained Traveling Salesman and Vehicle Routing Problems (Technical Report, Roskilde University, 2017)</p> <p> </p> <p>Evaluation.py</p> <p>A Python script that generates figures 8, 9, and 10 and tables 6, 7 and 8 (in csv-format) of the paper by processing data from Results.csv.</p> <p>It requires Results.csv to be in the same directory as the code.</p> <p>It also requires the following Python packages:</p> <p>- matplotlib</p> <p>- pandas</p> <p>- seaborn</p>
New Andrews-Curtis trivializations for Miller-Schupp groups presentations. Supplementary materials.
<p>This folder contains supplementary materials for the papers<br>"New Andrews-Curtis trivializations for Miller-Schupp groups presentations" and</p> <p>"Automated Theorem Proving Reveals a Lengthy Andrews-Curtis<br>Trivialization for a Miller-Schupp Trivial Group Presentation" (tentative, as of january 2025) </p>
Supplementary material for Targeted gene knock-in reduces variation between transformants in the mushroom-forming fungus Schizophyllum commune
<p>Supplementary data for "Targeted gene knock-in reduces variation between transformants in the mushroom-forming fungus <em>Schizophyllum commune</em>"</p> <p>Dataset consists of fluorescent images of <em>S. commune</em> strains with an ectopic or targeted integration of <em>dTomato </em>under the control of the <em>tubulin </em>promoter and <em>hom2 </em>terminator and the obtained fluorescent intensity of each strain. For thesholding the mean intensity of all pixels above 14 (range 0, 255) was calculated.</p> <p>Files are names according to strain (E1-E12 for ectopic integrations and TI1-TI6 for targeted integrations and WT for wildtype) and replicate.</p>
Alkali-silica reaction. A multi-disciplinary approach. Supplementary Materials: Movie file.
<p>Movie file being part of the Supplementary Materials document of the manuscript with the same title and submitted to the <a href="https://letters.rilem.net/index.php/rilem">RILEM Technical Letters</a>.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.