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87
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ShareScore release 0.9.0
Dataset results
87 results for “WES”
Dysregulated innate immune signaling cooperates with RUNX1 mutations to transform an MDS-like disease to AML (WES)
GEO Series GSE264052. Mus musculus. 12 samples. Type: Other.
Single Cell and Spatial Analysis of Human Squamous Cell Carcinoma [WES]
GEO Series GSE144237. Homo sapiens. 18 samples. Type: Other.
Distinct cellular mechanisms underlie anti-CTLA-4 and anti-PD-1 checkpoint blockade [WES]
GEO Series GSE100808. Mus musculus. 2 samples. Type: Genome variation profiling by high throughput sequencing.
A novel neural stem cell-derived immunocompetent mouse model of glioblastoma for preclinical studies (WES)
GEO Series GSE145558. Mus musculus. 9 samples. Type: Other.
Cancer cell genetics shaping of the tumor microenvironmentreveals myeloid cell-centric exploitable vulnerabilities in hepatocellular carcinoma [WES 2]
GEO Series GSE234897. Mus musculus. 15 samples. Type: Other.
Mutational signatures define immune and Wnt-associated subtypes of ampullary carcinoma [WES]
GEO Series GSE159098. Homo sapiens. 32 samples. Type: Other.
Resistance to PRMT5 Inhibitor Targeted Therapy in MCL [WES]
GEO Series GSE240725. Homo sapiens. 12 samples. Type: Other.
WES data from 286 diffuse gliomas under the 2021 WHO Classification of Tumors of the Central Nervous System
GEO Series GSE216383. Homo sapiens. 5 samples. Type: Methylation profiling by genome tiling array.
H3K27me3 conditions chemotolerance in triple-negative breast cancer [WES]
GEO Series GSE196764. Homo sapiens. 10 samples. Type: Other.
Th17 cells secrete TWEAK to trigger epithelial-mesenchymal transition and promote colorectal cancer liver metastasis (WES)
GEO Series GSE255165. Homo sapiens. 32 samples. Type: Genome variation profiling by high throughput sequencing.
SETD2 Mutations Do Not Contribute to Clonal Fitness in Response to Chemotherapy in Childhood B Acute Lymphoblastic Leukemia (WES)
GEO Series GSE231723. Homo sapiens. 12 samples. Type: Other.
Development of an orally bioavailable SWI/SNF ATPase degrader and acquired mechanisms of resistance [WES]
GEO Series GSE250327. Homo sapiens. 4 samples. Type: Other.
Multiple Phenotypes and Epigenetic Profiles in a Three-Generation Family History with GATA2 Deficiency [WES]
GEO Series GSE281134. Homo sapiens. 5 samples. Type: Other.
Small BAM files for practising RNA-seq and WES visualization (human)
<p>Two sets of BAM files for teaching RNA-seq and whole exome sequence (WES) visualization. </p> <p>All data was processed from open access SRA datasets. </p> <table> <tbody> <tr> <td>NAME</td> <td>RNA-EMT</td> <td>WES-LUNG</td> </tr> <tr> <td>SOURCE</td> <td>Yang et al. https://doi.org/10.1128/mcb.00019-16, SRA: PRJNA304419</td> <td>Ju et al. https://doi.org/10.1101/gr.133645.111; SRA: ERP001071)</td> </tr> <tr> <td>DESCRIPTION</td> <td>Human RNA-seq BAM files </td> <td>Human WES BAM files: Lung cancer</td> </tr> <tr> <td>SEQUENCING TYPE</td> <td>Illumina paired-end, stranded</td> <td>Illumina paired-end</td> </tr> <tr> <td>METHODS</td> <td>Original data are from cell lines subjected to epthithelium-mesenchymal transition. We took replicates corresponding to Day 0 (uninduced cells) and Day 7 (7 days after induction). Reads were aligned with STAR. BAM files are restricted to chromosome 18. Gene of interest: CDH2, up in mesenchymal state.</td> <td>WES were obtained from tumor and blood tissues from a non small cell lung cancer patient. Reads were aligned with BWA. A fraction of sequences corresponding to a panel of genes were retained. Genes of interest: DUSP27, KRAS</td> </tr> <tr> <td>MAPPED_TO</td> <td>HG19</td> <td>HG19</td> </tr> <tr> <td>SAMPLING RATE</td> <td>0.50%</td> <td>0.10%</td> </tr> <tr> <td>FILE SIZE</td> <td>2*40Mb</td> <td>2*7Mb</td> </tr> </tbody> </table> <div> </div>
Whole-Exome Sequencing (WES) of Intraductal Neoplasms of the Bile Duct (IPNB)
ClinicalTrials.gov study NCT03838913. IPD Sharing: NO. Countries: 1. Publications: 0.
WES of NF2-associated in Comparison to Sporadic Vestibular Schwannomas - Correlation With Clinical Data
ClinicalTrials.gov study NCT03210285. IPD Sharing: NO. Countries: 1. Publications: 0.
Unravelling subclonal heterogeneity and aggressive disease states in TNBC through single-cell RNA-seq [WES]
GEO Series GSE118303. Homo sapiens. 5 samples. Type: Other.
Genomic Analysis of Human Brain Metastases Treated with Stereotactic Radiosurgery Reveals Unique Signature Based on Treatment Failure. [WES]
GEO Series GSE259267. Homo sapiens. 38 samples. Type: Other.
In vivo genome editing restores dystrophin expression in Duchenne muscular dystrophy patient muscle fibers [WES]
GEO Series GSE167586. Homo sapiens. 14 samples. Type: Other.
Transcriptomic and epigenetic dissection of spinal ependymomas (SP-EPN) identifies clinically relevant subtypes enriched for tumors with and without NF2 mutation [WES]
GEO Series GSE242993. Homo sapiens. 29 samples. Type: Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.