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Dataset of "Advancing Logic Circuits with Halide Perovskite Memristors for Next-Generation Digital Systems"
<p><span>This dataset supports the article "Advancing Logic Circuits with Halide Perovskite Memristors for Next-Generation Digital Systems" </span></p> <p> </p> <p><span>Raw data for the article "<span>Advancing Logic Circuits with Halide Perovskite Memristors for Next-Generation Digital Systems</span>". For further details see the readme.txt file.</span></p>
Deep Submergence Dive location dataset from Bell et al. Sci Advances: How Little We've Seen: A Visual Coverage Estimate of the Deep Seafloor
<p><span>How Little We’ve Seen: A Visual Coverage Estimate of the Deep Seafloor </span></p> <p><span>Katherine L.C. Bell,</span><sup><span>1</span></sup><em><sup><span>∗</span></sup></em><em><sup><span> </span></sup></em><span>Kristen N. Johannes,</span><sup><span>1<em>,</em>2</span></sup><span> </span></p> <p><span>Brian R.C. Kennedy,</span><sup><span>1<em>,</em>3 </span></sup><span>Susan E. Poulton</span><sup><span>1</span></sup><span> </span></p> <p><sup><span>1</span></sup><span>Ocean Discovery League, Saunderstown, RI 02874, USA, </span></p> <p><sup><span>2</span></sup><span>Integrative Oceanography Division, Scripps Institution of Oceanography, University of California San Diego, San Diego, CA 92037, USA </span></p> <p><sup><span>3</span></sup><span>Biology Department, Boston University, Boston, MA 02215 USA </span></p> <p><em><sup><span>∗</span></sup></em><span>To whom correspondence should be addressed: croff@alum.mit.edu. </span></p> <p><span><br>Despite the importance of visual observation in the ocean, we have imaged a minuscule fraction of the deep seafloor. Sixty-six percent of the entire planet is deep ocean (≥200 m), and our data show we have visually observed less than 0.001%, a total area approximately a tenth of the size of Belgium. Data gathered from over 44 thousand deep-sea dives indicate we have also seen an incredibly biased sample. Sixty-five percent of all in situ visual seafloor observations in our dataset were within 200 nm of only three countries: the United States, Japan, and New Zealand. Ninety-seven percent of all dives we compiled have been conducted by just five countries: the United States, Japan, New Zealand, France, and Germany. This small and biased sample is problematic when attempting to characterize, understand, and manage a global ocean.</span></p>
Constraints on the emplacement of Martian nakhlite igneous rocks and their source volcano from advanced micro-petrofabric analysis
<p>Martian nakhlite meteorite electron backscatter data and magma body unit thickness calculation code.</p>
SAPPAN: Advanced Threat Data
<p>The data were acquired from a simulated environment consisting of two Windows clients, a Windows server, a Linux host, and a Linux router whose connection diagram can be found in the <a href="https://zenodo.org/record/5547862/files/infrastructure.png">infrastructure.png</a> file. One attack scenario was performed in this environment, and data relevant to this attack are uploaded as this dataset.</p> <p>The advanced attack scenario follows our previous experiment (see <a href="https://zenodo.org/record/4159878">SAPPAN: Combined Network and Host Data</a>), where the initial compromise of a host from outside has already been carried out. The scenario starts by running the code on Workstation1 and extracting the data, followed by a lateral movement to Workstation2, where the data is also extracted. The scenario ends with the deactivation of all implants. A detailed description of the scenario can be found in the <a href="https://zenodo.org/record/5547862/files/test_protocol.xlsx">test_protocol.xlsx</a> file.</p> <p>The scenario is inspired by the first scenario described in <a href="https://attackevals.mitre-engenuity.org/enterprise/apt29/operational-flow">APT29 Evaluation: Operational Flow</a> and <a href="https://github.com/mitre-attack/attack-arsenal/tree/master/adversary_emulation/APT29/Emulation_Plan/Day%201">APT29 Day 1 (Steps 1 through 10)</a>. However, in order to better showcase analyses relevant to the SAPPAN project, we have chosen a different C2 framework (POshC2 instead of Pupy RAT) and performed certain steps concerning code execution, downloading and exfiltrating data differently.</p> <p>The dataset consists of the following data:</p> <ul> <li><a href="https://zenodo.org/record/5547862/files/infrastructure.png">infrastructure.png</a> - Schema of the artificial infrastructure</li> <li><a href="https://zenodo.org/record/5547862/files/test_protocol.xlsx">test-protocol.xlsx</a> - Detailed protocol of the captured attack</li> <li><a href="https://zenodo.org/record/5547862/files/network_traffic_capture.pcap">network_traffic_capture.pcap</a> - Full packet capture (PCAP format) of all network traffic passing through firewall host</li> <li><a href="https://zenodo.org/record/5547862/files/RDR-data.zip">RDR-data.zip</a> - Raw event data (JSON format) from all Windows host with the following attributes: <ul> <li>time - the time when the sensor recorded the event</li> <li>event_type - the type of the event</li> <li>host - info about the host machine (name and OS version)</li> <li>event - event type-specific payload</li> </ul> </li> </ul>
Warming of experimental plant-pollinator communities advances phenologies, alters traits, reduces interactions, and depresses reproduction
<p>This is the data set supporting the analyses performed in the article entitled "Warming of experimental plant-pollinator communities advances phenologies, alters traits, reduces interactions, and depresses reproduction", by Natasha de Manincor, Alessandro Fisogni, and Nicole E. Rafferty, published in Ecology Letters (2023, 26:323-334, <a href="https://doi.org/10.1111/ele.14158">https://doi.org/10.1111/ele.14158</a>).</p> <p>The experiment has been performed in the greenhouse facilities at the University of California, Riverside, in 2021.</p> <p>The two treatments analyzed are ambient vs warmed (+ 4 °C), the focal pollinator species is <em>Osmia lignaria</em>, and the three focal plant species are <em>Collinsia heterophylla</em>, <em>Nemophila menziesii</em>, and <em>Phacelia campanularia</em>.</p> <p>Data are tab separated .txt files.</p>
Advanced open source data formats for geometrically and physically coupled systems - examples
<p>Some model files to describe a geometrically and physically coupled PDE and a ODE system, arising from discretization in space. The files correspond to:</p> <ul> <li>a simplified two component problem with coupling and an FMU in <strong>withFMU.json</strong></li> <li>the corresponding ODE in <strong>io_withFMU_FECoupled.json</strong></li> <li>a PDE model of a complete machine in <strong>ictimt_coupledModel.zip</strong>. This model belongs to https://doi.org/10.17973/MMSJ.2021_7_2021072</li> <li>the corresponding discrete model in <strong>ictimt_feCoupled.zip </strong>This model belongs to https://doi.org/10.17973/MMSJ.2021_7_2021072</li> </ul> <p> </p> <p> </p>
Datasets for Wohlfarth et al. (2023) An advanced thermal roughness model for airless planetary bodies - Implications for global variations of lunar hydration and mineralogical mapping of Mercury with the MERTIS spectrometer
<p>This document describes the datasets and modeling results presented and discussed in our full research article.<br> <br> Wohlfarth, K., Wöhler, C., Hiesinger, H., Helbert, J. 2023, An advanced thermal roughness model for airless planetary bodies - Implications for global variations of lunar hydration and mineralogical mapping of Mercury with the MERTIS spectrometer, Astronomy and Astrophysics, 672<br> <br> <a href="https://doi.org/10.1051/0004-6361/202245343">https://doi.org/10.1051/0004-6361/202245343</a><br> <br> We provide several visualization scripts that read and display the results for convenience. Access to the original MATLAB® code for the thermal model implementation is available upon request (<a href="mailto:kay.wohlfarth@tu-dortmund.de">kay.wohlfarth@tu-dortmund.de</a>).<br> <br> More info in Dataproducts.pdf</p>
A Novel Approach to Heart Failure Prediction and Classification through Advanced Deep Learning Model
<p>A Novel Approach to Heart Failure Prediction and Classification through Advanced Deep Learning Model</p>
Figure 2 in Recent advances in phylogeny and taxonomy of Near and Middle Eastern Vipers – an update
Figure 2. Approximate distribution of Montivipera in Asia Minor, Iran, Levantine and adjacent regions. Geographic origin of sampling locations are indicated by open circles. Nominal taxa are given with corresponding terrae typicae.
Warming acts through earlier snowmelt to advance but not extend alpine community flowering
<p>Large-scale warming will alter multiple local climate factors in alpine tundra, yet very few experimental studies examine the combined yet distinct influences of earlier snowmelt, higher temperatures and altered soil moisture on alpine ecosystems. This limits our ability to predict responses to climate change by plant species and communities. To address this gap, we used infrared heaters and manual watering in a fully factorial experiment to determine the relative importance of these climate factors on plant flowering phenology, and response differences among plant functional groups. Heating advanced snowmelt and flower initiation, but exposed plants to colder early-spring conditions in the period prior to first flower, indicating that snowmelt timing, not temperature, advances flowering initiation in the alpine community. Flowering duration was largely conserved; heating did not extend average species flowering into the latter part of the growing season but instead flowering was completed earlier in heated plots. Although passive warming experiments have resulted in warming-induced soil drying suggested to advance flower senescence, supplemental water did not counteract the average species advance in flowering senescence caused by heating or extend flowering in unheated plots, and variation in soil moisture had inconsistent effects on flowering periods. Functional groups differed in sensitivity to earlier snowmelt, with flower initiation most advanced for early-season species and flowering duration lengthened only for graminoids and forbs. We conclude that earlier snowmelt, driven by increased radiative heating, is the most important factor altering alpine flowering phenology. Studies that only manipulate summer temperature will err in estimating the sensitivity of alpine flowering phenology to large-scale warming. The wholesale advance in flowering phenology with earlier snowmelt suggests that alpine communities will track warming, but only alpine forbs and graminoids appear able to take advantage of an extended snow-free season. </p>
Ancient Greek Literature for Advanced Data Processing: A Text Fabric Representation of Open Access Texts in TEI XML
<p>This data set contains a full conversion of Greek texts available in the Perseus Digital Library and the Open Greek and Latin Project to the Text Fabric data format. The main advantage of the Text Fabric datatype over the original TEI XML format is that it utilizes a strict separation of text and annotation in a flat data structure. At the same time, it permits multiple distinct formats of the same text as well as an unlimited depth of (embedded) annotations. Because of its flat data structure, it facilitates easy and clean procedures to analyze, transform, and enrich the available data. Many of these processes are very difficult to conduct while departing from the hierarchically organized XML tree representation.</p>
Snapgene files of the genetic constructions for Morella thermoacetica used in Task 2.2 (Advanced GMO preparation for gas (CO2/CO/H2) fermentation process)
<p>Part of WP2 these snapgene files of the genetic constructions for Morella thermoacetica were used in Task 2.2 (Advanced GMO preparation for gas (CO2/CO/H2) fermentation process). The strains we were able to construct were:</p> <p>1.- M. thermoacetica DSM 521 pK18ACSACassette complete<br>2.- M. thermoacetica DSM 521 pK18ACSACassette AatA<br>3.- M. thermoacetica DSM 2955 pK18ACSACassette PudL-AckA<br>4.- M. thermoacetica DSM 2955 pK18ACSACassette AatA</p> <p>To construct these strains CSIC used a modular synthetic construction carrying the regions up and down of the acsA gene to delete it. Within these regions, a gene cluster composed by the GmR, pduL, ackA and aatA genes, all of them controlled by the strong constitutional promoter of the glyceraldehyde 3-phosphate dehydrogenase gene from Moorella were inserted. The modular design of our recombinant cassette allows us to construct different cassettes with different gene combinations. In all cases, the acsA gene will be deleted and the acetate cannot be transformed back into acetyl-CoA:</p> <p>Cassette 1.- ACSA-GmR-pduL-ackA-aatA-ACSA: this is a complete cassette which carries the genes encoding the phosphotransacetylase, the acetate kinase and the acetate exporter. This strain should accumulate a higher concentration of acetate inside the cell that should be exported to the medium.</p> <p>Cassette 2.- ACSA-GmR-pduL-ackA-ACSA: this cassette lacks the transporter, so this strain should accumulate a higher concentration inside the cell. Then, the only way to prevent acetate toxicity is by increasing its own mechanisms to export this compound or by growing slower in order to manage acetate accumulation.</p> <p>Cassette 3.- ACSA-GmR-aatA-ACSA: this cassette only carries the acetate exporter, so virtually all the acetate produced inside the cell should be exported. This is another strategy to increase the metabolic flux inside the cell towards acetate without overexpressing any other gene of the acetate pathway, and at the same time avoiding toxicity problems.</p> <p>Cassette 4.- ACSA-GmR-ACSA: this cassette would generate an insertion mutant in which acsA is only replaced by the GmR encoding gene. This mutant should also generate a higher amount of acetate since it cannot be transformed back to acetyl-CoA.</p>
Supporting information for "Illuminating the nanostructure of diffuse interfaces: Recent advances and future directions in reflectometry techniques"
<p>This deposition contains the data and analysis (Jupyter notebooks) detailed in Illuminating the nanostructure of diffuse interfaces: Recent advances and future directions in reflectometry techniques. All Jupyter notebooks have also been converted into PDF files for ease of viewing.</p><p> </p><p>All data and code (notebooks) required to reproduce the analysis can be found within the "supporting_data_analysis.zip" archive. This archive contains two sub-directories:</p><ul><li>insituAnalysis<ul><li>Jupyter notebook outlining how to perform the `on-the-fly' analysis.</li><li>Data directory containing all temporally sliced neutron reflectometry data.</li></ul></li><li>MaxEnt<ul><li>Jupyter notebook outlining how to perform the maximum entropy modelling approach for polymer volume fraction profiles.</li><li>Data directory containing relevant neutron reflectometry data and PCHIP spline modelling by Gresham et al. (<a href="www.doi.org/10.1107/S160057672100251X">10.1107/S160057672100251X</a>).</li><li>Code available on the <a href="https://github.com/refnx/refnx-models/tree/master/MaxEntVFP">refnx-models GitHub repo</a>.</li></ul></li></ul><p> </p>
Narratives on inequalities in enablers and hindrances for advancing behavioural change through an inclusive Green Deal in Europe. ACCTING dataset
<p><span>The impact of climate change and the capacity to mitigate its negative impacts are unevenly distributed across and within societies; it is the poorer, marginalised and vulnerable groups who are the most acutely affected. This dataset captures some of the experiences of those groups. It includes 358 narratives collected via individual narrative interviews in 13 European countries during June-December 2022 across eight thematic research lines – each research line addressing an EU Green Deal policy area.</span></p> <p><span>The data was gatered in the EU funded </span><span>ACCTING, which </span><span>mobilises research experimentation and innovation to promote an inclusive and socially just European Green Deal focusing on the inequalities produced by its policies and supporting behavioural change at individual and collective levels. </span></p> <p><span>The project explores the impact of Green Deal policy initiatives on individual and collective behaviours, provides evidence, and empowers policymakers and stakeholders to anticipate policy responses and potential negative influences, and mitigate such impacts in decision-making. ACCTING collects new data on Green Deal policy interventions and co-designs and implements pilot actions to reduce or prevent policy-related inequalities and advance behavioural change for an inclusive and equal European Green Deal. </span></p>
High-density genetic linkage mapping in Sitka spruce advances the integration of genomic resources in conifers
<p><span>In species with large and complex genomes such as conifers, dense linkage maps are a useful for supporting genome assembly and laying the genomic groundwork at the structural, populational and functional levels. However, most of the 600+ extant conifer species still lack extensive genotyping resources, which hampers the development of high-density linkage maps. In this study, </span><span><span>we developed a linkage map relying on 21,570 SNP makers in </span></span><span>Sitka spruce (<em>Picea sitchensis</em> [Bong.] Carr.)</span><span><em><span>, </span></em></span><span><span>a long-lived conifer from western North America that is widely planted for productive forestry in the British Isles. </span></span><span>We used a single-step mapping approach to efficiently combine RAD-Seq and genotyping array SNP data for 528 individuals from two full-sib families. As expected for spruce taxa, the saturated map contained 12 linkages groups with a total length of 2,142 cM. The positioning of 5,414 unique gene coding sequences allowed us to compare our map with that of other Pinaceae species, which provided evidence for high levels of synteny and gene order conservation in this family. We then developed an integrated map for <em>P. sitchensis</em> and <em>P. glauca</em> based on 27,052 makers and 11,609 gene sequences. Altogether, these two linkage maps, the accompanying catalog of 286,159 SNPs and the genotyping chip developed herein opens new perspectives for a variety of fundamental and more applied research objectives, such as for the improvement of spruce genome assemblies, or for marker-assisted sustainable management of genetic resources in Sitka spruce and related species.</span></p>
Data from: Hatching plasticity is associated with a more advanced stage at hatching in an Ambystoma with terrestrial eggs
<p>These data are from a 2019 study of embryonic development in marbled salamander (<em>Ambystoma opacum</em>) and ringed salamander (<em>Ambystoma annulatum</em>). Egg masses were collected in Arkansas in the fall of 2019 and transported to the University of North Carolina Asheville. Clutches were split and embryos were reared in one of two environments mimicking the terrestrial environment typical of <em>A. opacum</em> nests and the aquatic environment typical of <em>A. annulatum</em> egg masses. Response variables recorded include number of embryos that hatched, age (days) at hatching, Harrison stage at hatching, and dry mass at hatching.</p>
Image repository for "Towards advancing Translators' Guidance for Organisations Tackling Innovation Challenges in Manufacturing within an Industry 5.0 context"
<p>The files on this trusted repository are provided by the authors of the manuscript with the title “Towards advancing Translators’ Guidance for Organisations Tackling Innovation Challenges in Manufacturing within an Industry 5.0 context” that was received by the MDPI journal Sustainability (ISSN 2071-1050) on 29 January 2024, got the manuscript ID sustainability-2872279, and is intended to become part of the special issue “Sustainable Materials, Manufacturing and Design” accessible under the link <a href="https://www.mdpi.com/journal/sustainability/special_issues/Sus_materials_manufacturing_design">https://www.mdpi.com/journal/sustainability/special_issues/Sus_materials_manufacturing_design</a>.</p> <p>The authors Paul-Ludwig Michael Noeske, Alexandra Simperler, Welchy Leite Cavalcanti, Vinicius Carrillo Beber, Brendon Weager, Tasmin Alliott, Peter Schiffels, and Gerhard Goldbeck aim at facilitating common access to the files representing high-resolution microscopy images (corresponding to the light microscopy (LM) and scanning electron microscopy (SEM) images shown in Figure 9 and Figure 12 in the manuscript or complementing them) given in .jpg and .tif format, respectively. Moreover, this repository comprises a .csv file containing the data points underlying the values presented in Table A1 of this manuscript and their description. The authors indicate here that following the sixth step of the translation process in materials modelling the translator may provide these data in this presentation that is adapted to the process-centric perspective required by representatives of an enterprise manufacturing prepregs and to their background knowledge disclosed to the translator beforehand.“</p>
Data and code for publication: Advancing Maternal Transfer of Organic Pollutants across Reptiles for Conservation and Risk Assessment Purposes
<p>Dataset and r code to prepare the dataset, in support of the publication:</p> <p>"Advancing maternal transfer of organic pollutants across reptiles for conservation and risk assessment purposes"</p> <p>Munoz, C.C., Charles, S., Vermeiren, P. (2024) Environmental Science and Technology, https://doi.org/10.1021/acs.est.4c04668</p> <p>contact email: munozc.cynthia@gmail.com</p>
Figure 1 in Advances in understanding bat infection dynamics across biological scales
Figure 1. Map illustrating the geographical and taxonomic diversity of bat species highlighted in case studies throughout the main text, with approximate study location and photo. Species names are coloured according to bat family, with a simplified phylogeny showing relationships between families. See electronic supplementary material for photo permissions.
Figure 2 in Advances in understanding bat infection dynamics across biological scales
Figure 2. Overarching research priorities for future studies on bat infection dynamics, organized at the individual, population and community scales; S, susceptible; I, infected; R, recovered.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.