Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
6,861
datasets available to search
ShareScore release 0.9.0
Dataset results
6,861 results for “animation”
Metabolic scaling, growth, and reproduction data for animals
<p>Data for the scaling of metabolic rate, rates of growth, and annual reproduction for animals. Data and R scripts associated with "Metabolic scaling is the product of life history optimization"</p>
Combined proton radiography and irradiation for high-precision preclinical studies in small animals
<p>Data used for the publication "Combined proton radiography and irradiation for high-precision preclinical studies in small animals".</p> <p>The repository contains all data that was used to generate the quantitative results and figures in the submitted manuscript.</p> <p>Further documentation for the provided code can be found here: https://github.com/jo-mueller/radiographic_workflow_evaluation</p>
iNat-Anim
<p><strong>iNat-Anim Dataset</strong></p> <p>iNat-Anim (iNaturalist + Animalia) is a multi-modal few-shot image classification benchmark. It consists of 195,605 images across 673 species from an array of animal classes.</p> <p>The images are taken as a subset of the images from the iNaturalist 2021 CVPR challenge [1] and are augmented with descriptions of each species from <a href="https://animalia.bio">animalia.bio</a>, an online animal encyclopedia (gathered March 2021). The descriptions are typically short and qualitatively more pertinent with respect to visual characteristics than generic species descriptions (e.g. Wikipedia).</p> <p>While the raw images are included, embeddings for all images have been precomputed with a ResNet-152 model [2], allowing for efficient classifier training. Separately, we include cropped and downsampled (128x128) copies of the images, ideal for fast data exploration.</p> <p>Directory structure:</p> <ul> <li><em>images/[id]_[class]/</em>: Animal images of species `class`.</li> <li><em>inat_anim.json</em>: Natural language class descriptions and image metadata.</li> <li><em>image_embeddings_resnet-152.hdf5</em>: Precomputed ResNet-152 [2] image embeddings for all images.</li> </ul> <p>[1] Grant Van Horn and Oisin Mac Aodha. 2021. iNat Challenge 2021. https://sites.google.com/view/fgvc8/competitions/inatchallenge2021?authuser=0</p> <p>[2] Kaiming He, Xiangyu Zhang, Shaoqing Ren, and Jian Sun. 2016. Deep residual learning for image recognition. In _2016 IEEE Conference on Computer Vision and Pattern Recognition_, pages 770–778.</p>
Source code and data accompanying "Man gave names to all those animals"
<p>This package provides source code and data for the two blog post on animal names ("Man gave names to all those animals..."), which were published in the blog "The genealogical world of phylogenetic networks" (http://phylonetworks.blogspot.de/2017/10/man-gave-names-to-all-those-animals.html). This upload also contains the data from Gerhard Jäger's paper titled "Support for linguistic macrofamilies from weighted sequence alignment" (PNAS, DOI: 10.1073/pnas.1500331112), generously provided by the author.</p>
Agriculture - General: Animal Production and Health, Natural Resources and Environment 2
<p>1996-1999, entomofauna inventory in cities and countrysides on 20 different habitats in The Netherlands using pitfalls and sweeping nets Jagers op Akkerhuis G, Dimmers W (2016). Alterra (NL) - Comparison entomofauna in cities en countrysides. Version 1.1. Alterra, Wageningen UR. Occurrence dataset <a href="https://doi.org/10.15468/guxqfv">https://doi.org/10.15468/guxqfv</a> accessed via GBIF.org</p>
Agriculture - General: Animal Production and Health 6
<p>This dataset contains the digitized treatments in Plazi based on the original journal article Viana, Jéssica Herzog, Ribeiro-Costa, Cibele Stramare (2013): Review of the largest species group of the New World seed beetle genus Sennius Bridwell (Coleoptera: Chrysomelidae), with host plant associations. Zootaxa 3736 (5): 501-535, DOI: <a href="http://dx.doi.org/10.11646/">http://dx.doi.org/10.11646/</a></p>
Agriculture - General: Animal Production and Health, Natural Resources and Environment 3
<p>1996-1999, entomofauna inventory in cities and countrysides on 20 different habitats in The Netherlands using pitfalls and sweeping nets Jagers op Akkerhuis G, Dimmers W (2016). Alterra (NL) - Comparison entomofauna in cities en countrysides. Version 1.1. Alterra, Wageningen UR. Occurrence dataset <a href="https://doi.org/10.15468/guxqfv">https://doi.org/10.15468/guxqfv</a> accessed via GBIF.org</p>
Agriculture - General: Animal Production and Health 7
<p>This dataset contains the digitized treatments in Plazi based on the original journal article Johnson, Robert A., Cover, Stefan P. (2015): A taxonomic revision of the seed-harvester ant genus Pogonomyrmex (Hymenoptera: Formicidae) on Hispaniola. Zootaxa 3972 (2): 231-249, DOI: <a href="http://dx.doi.org/10.11646/">http://dx.doi.org/10.11646/</a></p>
Agriculture - General: Animal Production and Health, Natural Resources and Environment
<p>1996 till 2000, entomofauna inventory on clay digged off riversides and on reference site in The Netherlands using pyramidtraps Faber J, Dimmers W (2016). Alterra (NL) - Entomofauna inventory in riverside grasslands. Version 1.1. Alterra, Wageningen UR. Occurrence dataset <a href="https://doi.org/10.15468/hlhr1r">https://doi.org/10.15468/hlhr1r</a> accessed via GBIF.org</p>
Agriculture - General: Animal Production and Health, Natural Resources and Environment 7
<p>Spring 2010 and Summer 2011, microarthropod fauna inventory for foodweb analysis in five European countries using soil cores and tullgren extraction</p> <p>Bloem J, Dimmers W (2016). Alterra (NL) - Microarthropods inventory in European countries. Version 1.1. Alterra, Wageningen UR. Occurrence dataset <a href="https://doi.org/10.15468/zkqto2">https://doi.org/10.15468/zkqto2</a> accessed via GBIF.org</p>
Agriculture - General: Animal Production and Health 5
<p>This dataset contains the digitized treatments in Plazi based on the original journal article Michelsen, Verner (2012): Revision of the European Delia pruinosa species group (Diptera: Anthomyiidae) feeding as larvae in seed capsules of Silene L. (Caryophyllaceae). Zootaxa 3434: 31-48, DOI: 10.5281/zenodo.282060</p>
Agriculture - General: Animal Production and Health 4
<p>This dataset contains the digitized treatments in Plazi based on the original journal article Yus-Ramos, Rafael, Ventura, Daniel, Bensusan, Keith, Coello-García, Pedro, György, Zoltán, Stojanova, Anelia (2014): Alien seed beetles (Coleoptera: Chrysomelidae: Bruchinae) in Europe. Zootaxa 3826 (3): 401-448, DOI: <a href="http://dx.doi.org/10.11646/">http://dx.doi.org/10.11646/</a>...</p> <p>Stojanova A (2013). Alien seed beetles (Coleoptera: Chrysomelidae: Bruchinae) in Europe. Plazi.org taxonomic treatments database. Checklist dataset <a href="https://doi.org/10.11646/zoot">https://doi.org/10.11646/zoot</a>... accessed via GBIF.org</p>
Agriculture - General: Animal Production and Health 8
<p>1992, invertebrate fauna inventory on peat swamps in The Netherlands using pyramidtraps Siepel H, Dimmers W (2016). Alterra (NL) - Entomofauna inventory in peat swamps. Version 1.1. Alterra, Wageningen UR. Occurrence dataset <a href="https://doi.org/10.15468/ibom6z">https://doi.org/10.15468/ibom6z</a> accessed via GBIF.org</p>
Agriculture - General: Animal Production and Health, Natural Resources and Environment 5
<p>2001 till 2002 and 2004, inventory of entomofauna in forestwalls banks, diches, road verges in The Netherlands using pitfalls and sweeping net</p> <p>Jagers op Akkerhuis G, Dimmers W (2016). Alterra (NL) - Comparison of entomofauna in four different habitats. Version 1.1. Alterra, Wageningen UR. Occurrence dataset <a href="https://doi.org/10.15468/mkoqqh">https://doi.org/10.15468/mkoqqh</a> accessed via GBIF.org</p>
Agriculture - General: Animal Production and Health, Natural Resources and Environment 6
<p>2007, 2011 and 2012, microarthropod fauna inventory in a nature restauration experiment (re-introduction) on a calcareous grassland and three reverence sites in the province of Limburg using pF-cores</p> <p>Smits N, Dimmers W (2016). Alterra (NL) - Microarthropods inventory in calcareous grasslands. Version 1.1. Alterra, Wageningen UR. Occurrence dataset <a href="https://doi.org/10.15468/28jocn">https://doi.org/10.15468/28jocn</a> accessed via GBIF.org</p>
Agriculture - General: Animal Production and Health, Natural Resources and Environment 4
<p>1993 till 2001, entomofauna inventory in cattle grazed versus non-grazed dune grassland using pitfalls</p> <p>van Wingerden W, Dimmers W (2016). Alterra (NL) - Entomofauna inventory in cattle grazed dune grassland. Version 2.1. Alterra, Wageningen UR. Occurrence dataset <a href="https://doi.org/10.15468/zp5oif">https://doi.org/10.15468/zp5oif</a> accessed via GBIF.org</p>
Agriculture - General: Animal Production and Health, Natural Resources and Environment 8
<p>2000-2003, microarthropod fauna inventory of arable land and grassland on sandy soil using pF-cores. Points of interest are biodiversity, nutrients and disease suppression</p> <p>Faber J, Dimmers W (2016). Alterra (NL) - Microarthropods inventory in grassland and arable land. Version 1.1. Alterra, Wageningen UR. Occurrence dataset <a href="https://doi.org/10.15468/fwvi7m">https://doi.org/10.15468/fwvi7m</a> accessed via GBIF.org</p>
Supplementary Files for "Proteomic analysis of the sponge Aggregation Factor implicates an ancient toolkit for allorecognition and adhesion in animals"
<p>This repository hosts supplemental files for the Manuscript "Proteomic analysis of the sponge Aggregation Factor implicates an ancient toolkit for allorecognition and adhesion in animals" by Ruperti, et al., 2024.</p> <ul> <li><strong>Suppl_File_wreath_domain_model.pdb</strong>: AlphaFold3 model for the <em>C. prolifera</em> MAFp3 wreath domain (aa 33 - 317)</li> <li><strong>Suppl_File_MAFAP1_Cterm_model.cif</strong>: AlphaFold3 model for the <em>C. prolifera</em> MAFAP1 C-terminal domain, region 1 and 2</li> <li><strong>Suppl_File_AFInteracting_hmm.hmm</strong>: HMM sequence profile of AF-interacting region of C. prolifera proteins</li> <li><strong>XXX_Foldseek.zip</strong>: Foldseek raw search results, separated by target databases (Swissprot, AFDB, CATH50)</li> </ul>
Coral growth data for the research article "Reconstruction of long-term sub-lethal effects of warming on a temperate coral in a climate change hotspot" in Journal of Animal Ecology
<p>This repository contains the coral growth data files used to generate the results for the following article:</p> <p> </p> <p>MJ. Vergotti, JP. D’Olivo, T. Brachert, P. Capdevila, J. Garrabou, C. Linares, P. Spreter, DK. Kersting (2024) Reconstruction of long-term sub-lethal effects of warming on a temperate coral in a climate change hot-spot. <em>Journal of Animal Ecology</em>. https://besjournals.onlinelibrary.wiley.com/doi/10.1111/1365-2656.14225</p> <p> </p> <p><strong>Abstract: </strong>The impact of warming on zooxanthellate corals is widespread, from tropical to temperate seas, with their associated mortalities causing global concern. The temperate coral <em>Cladocora caespitosa</em> is the only zooxanthellate coral with reef-building capacity in the Mediterranean Sea, a climate change hotspot with warming rates triple the global average. Over the past two decades, <em>C. caespitosa</em> populations have suffered severe mortality events associated with marine heatwaves (MHWs). However, with monitoring efforts beginning, at best, in the 2000s, the occurrence of MHWs before to that period, as well as the sub-lethal effects of these events remain poorly understood. Here we use sclerochronology to reconstruct the histories of past stress events and long-term sub-lethal effects on <em>C. caespitosa</em> in three locations within the NW Mediterranean Sea, each with different environmental conditions. Skeletal extension, density and calcification rates were compared to the <em>in situ</em> seawater temperature of each site to assess their relationship. Additionally, we assessed the occurrence of skeletal growth anomalies to reconstruct stress events between 1991 and 2021, a period that encompasses the onset and evolution of warming-related mass mortality events in the NW Mediterranean Sea. Our results reveal a positive association between calcification and temperature, following a latitudinal temperature gradient. However, the evolution of the likelihood distribution of growth rates in the warmest site (Columbretes Islands) since the 1990s indicates a decrease in linear extension and calcification rates during the most recent years. With the increase in the frequency of MHWs and growth anomalies during the last decade, this decline suggests a recurrence in physiological stress events. These results unravel information on the long-term impacts of warming on coral growth and highlight the potential of applying sclerochronology to reconstruct sub-lethal effects of warming using <em>C. caespitosa</em>. </p> <p> </p> <p> </p> <p><strong>Funding</strong>: This research is supported by the Horizon 2020 program of research and innovation of the European Union under the MaCoBioS grant agreement, by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation, project no. 401447620) and by the Spanish Ministry of Science, Innovation and Universities under the project UndResCoral (project no. PID2022-137539OA-C22). D.K.K. was supported by a Ramon y Cajal postdoctoral grant funded by the Ministry of Science and Innovation (PEICTI 2021–2023; grant no. RYC2021-033576-I). C.L. acknowledges the support by ICREA Academia. J.G. acknowledges the grant “Severo Ochoa Centre of Excellence” accreditation (CEX2019-000928-S) funded by AEI 10.13039/501100011033.</p>
Simulated data from abmAnimalMovement: An R package for simulating animal movement using an agent-based model
<p>Contained here are the data simulated as part of the manuscript: "abmAnimalMovement: An R package for simulating animal movement using an agent-based model" that can be found at: https://github.com/BenMMarshall/abmAnimalMovement (and archived at: https://doi.org/10.5281/zenodo.6951937).</p> <p>- BADGER_locations.csv: A csv file that contains the realised locations of the example badger simulation, where each row is equal to a timestep. Columns include: timestep, the timestep as an integer; x, the x coordinate of the animal; y, the y coordinate of the animal; sl, the step length between locations used during the simulation; sl_rescale the rescale factor required to return step lengths back to the input scale; ta, turning angle between locations in degrees; behave, the behavioural mode the animal was in at a given timestep; chosen, the location chosen out of the number of options available; destination_x and destination_y the point the animal was attracted to at that time (note exploratory behaviour is not subject attraction).</p> <p>- BADGER_options.csv: A csv file that contains the options available to the example badger simulation over the entire simulation duration, where each row is equal to an option repeated for each timestep. Columns include: timestep, the timestep as an integer; oall_x, and oall_y show the x and y coordinates of all the options available to an animal at a timestep; oall_steplengths are the step lengths from the current location compared to all the options.</p> <p>- completelist.RDS: This RDS file contains a list object of length three, where the full simulation outputs from each three examples are stored. Each species slot contains the “locations” dataframe (see description of locations.csv), the "options" dataframe (see description of options.csv), and a nested list containing all the "inputs" used to generate the simulated results (split into subsections: inputs_basic that contains inputs linked to simulation duration and intensity, inputs_destination that contains inputs linked to destination and attraction aspects, inputs_movement that contains inputs linked to movement capacity and behavioural switching, inputs_cycle that contains inputs linked to activity cycling, inputs_layerSeed that contains the environmental matrices and seed). A fourth object is returned called "others" that captures all other outputs, mainly used internally for debugging and checking.</p> <p>- KINGCOBRA_locations.csv: A csv file that contains the realised locations of the example king cobra simulation, where each row is equal to a timestep. The file structure follows the same as the BADGER_options.csv file.<br>KINGCOBRA_options.csv: A csv file that contains the options available to the example king cobra simulation over the entire simulation duration, where each row is equal to an option repeated for each timestep. The file structure follows the same as the BADGER_options.csv file.</p> <p>- VULTURE_locations.csv: A csv file that contains the realised locations of the example vulture simulation, where each row is equal to a timestep. The file structure follows the same as the BADGER_locations.csv file.<br>VULTURE_options.csv: A csv file that contains the options available to the example vulture simulation over the entire simulation duration, where each row is equal to an option repeated for each timestep. The file structure follows the same as the BADGER_locations.csv file.</p> <p>- eg_landscapedata_completelist.RDS: This RDS file contains the landscape matrices required for recreating the simulated outputs described in the manuscript named above. It is a list of three objects ("shelter", "forage", "movement"), each a numeric matrix of equal size, with values describing the quality of each landscape characteristic.</p> <p>- argument_table.csv: Descriptive table of the simulation inputs used in the walk-through manuscript.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.