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52 results for “chloroplast DNA”
Figure 4 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 4 Nanhaiaspeciosa (Champ. ex Benth.) J.Compton & Schrire. A Habit B flower bud with bract and bracteole C calyx exterior and bracteole D detail of calyx exterior E detail of calyx interior F standard petal G wing petal H keel petal I staminal column J staminal column lateral view K stamen ventral and dorsal view L ovary and style M style and stigma N pod O seed lateral view P seed ventral view (all from Shiu Ling Hu 6091). Drawn by Margaret Tebbs.
Figure 2 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 2 Distinctive morphological characters in Tribe Wisterieae. AEndosamararacemosa standard petal inner surface BPadbruggeadasyphylla standard petal inner surface CPadbruggeadasyphylla pod DPadbruggeadasyphylla seed lateral view EAustrocalleryaaustralis standard petal inner surface FAustrocalleryapilipes pod GAustrocalleryapilipes seed lateral view HPadbruggeafilipes standard petal IAfgekiasericea standard petal inner surface JAfgekiasericea seed lateral view KAfgekiasericea seed angled lateral view LCalleryanitida pod MCalleryanitida seed ventral view NCalleryanitida seed polar view OCalleryacinerea pod PWhitfordiodendronnieuwenhuisii pod QWhitfordiodendronerianthum seed RWisteriopsiseurybotrya gibbosity SWisteriopsischampionii gibbosity A from Luang Vanpruk 188 B from Scortechini 429 C, D from Lamb 395/91 E from L.J.Brass 32129 F, G from B.Gray 04319 H from Maung Po Khant 15326 I from C. Chermsirivathana 996 J, K from Mrs Collins 104/9 L–N from Theophilus SampsonO from G.Forrest 19279 P from J.P.Mogea 4182 Q from photo Y.Sirichamorn s.n..R from J. & M.S.Clemens 3637 S from Shiu Ying Hu 10476. See Appendix 1 for voucher details. Drawn by Margaret Tebbs.
Supplementary material 1 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
: Data type: molecular data
Figure 1 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 1 Combined Maximum Liklihood (ML) and Bayesian Inference (BI) Phylogenetic tree of Tribe Wisterieae. The tree is derived from the combined plastid and ITS, RAxML bipartitions analysis representing 77 (36) ingroup samples (taxa) and 59 (40) outgroup samples (taxa). The outgroup Schefflerodendron is used to root the trees. Lines in bold on the phylogeny incorporate results from the combined Bayesian Inference analysis, demarcating clades with BPP (0.95) support and above. Nodes are marked up with bootstrap values as percentages derived from the combined ML analysis with values of 50% or less marked in red. The collapsed portion of the tree, below the IRLC and above Schefflerodendron, represents the following genera (see Suppl. material 1: Figs S1–S6): Tribe Robinieae (Coursetia, Gliricidia, Poissonia & Poitea); Tribe Sesbanieae (Sesbania), Tribe Loteae (Coronilla, Lotus & Securigera); Tribe Millettieae (Millettia), Tribe Abreae (Abrus); Tribe Phaseoleae (Clitoria & Ophrestia); Tribe Indigofereae (Phylloxylon) and basal millettioids (Austrosteenisia, Disynstemon, Xeroderris & Platycyamus). Tribe Wisterieae is treated within five clades (Clades A–E), colour coded green for Clade A (Sarcodum, Endosamara & Sigmoidala); cyan for Clade B (Nanhaia & Wisteriopsis), red for Clade C (Callerya, Serawaia, Whitfordiodendron, Kanburia & Afgekia); orange for Clade D (Padbruggea & Austrocallerya) and yellow for Clade E (Wisteria). Each clade is further subdivided to represent the genera (except for the single accession of Serawaia which is incorporated with Whitfordiodendron in Clade C2) and E1 and E2 represent the geographical disjunction of species in Wisteria. Outgroups within the IRLC in purple include Glycyrrhiza, Adinobotrys and representatives of the Temperate Tribe block. The ingroup (IRLC) and Tribe Wisterieae are demarcated with arrows on the tree.
Figure 6 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 6 Austrocalleryaaustralis (Endl.) J.Compton & Schrire. A Habit B leaf and detail of leaflet apex C flower buds with bract and 2 bracteoles D flower E calyx external surface F calyx detail of inner surface G standard petal inner surface H wing petal I keel petal J staminal column ventral view K stamens dorsal and ventral views L staminal column lateral view M ovary lateral view N stigma O pod P seed angled lateral view (all from Martin 1392). Drawn by Margaret Tebbs.
Figure 3 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 3 Sigmoidalakityana (Craib) J.Compton & Schrire. A Habit B young leaf C lower surface of leaf D leaflet detail of hairs E inflorescence F flower bud with bracteole and pedicel G calyx external surface H standard petal inner surface I wing petal J keel petal K staminal column lateral view L staminal column ventral view M stamen dorsal and ventral views N ovary lateral view O style and stigma P pod Q pod detail of surface R seed ventral view S seed lateral view (all from Clark 245). Drawn by Margaret Tebbs.
Plate 2 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Plate 2 Afgekia, Sarcodum and Padbruggea. AAfgekiamahidoliae, Thailand, Sai Yok distr. Kanchanaburi, Y.Sirichamorn s.n.. B, CAfgekiasericea Thailand S.Mattapha 1158DSarcodumscandens Vietnam, Quang Binh Prov. Lôc & Quang P11554EAfgekiamahidiliae Thailand, Sai Yok distr. Kanchanaburi Y.Sirichamorn s.n.. FSarcodumscandens Vietnam, Quang Binh Prov. Lôc & Quang P11554GSarcodumscandens Laos, Sop Teuang, Bolikhamxai Prov. S.Lanorsavanh 1299H, IPadbruggeafilipes Thailand, Chiang Mai, Y.Sirichamorn & S.Mattapha YSM2017-1.
Figure 2 from: Ballardini M, Mercuri A, Littardi C, Abbas S, Couderc M, Ludeña B, Pintaud J (2013) The chloroplast DNA locus psbZ-trnfM as a potential barcode marker in Phoenix L. (Arecaceae). ZooKeys 365: 71-82. https://doi.org/10.3897/zookeys.365.5725
Figure 2 - Structure and variation of the minisatellite in the trnG-trnfM intergenic spacer. The repeats of the two mutational motifs (1 and 2) are indicated above the sequence alignment of the 7 haplotypes recorded. The pattern of inverted repeats generated by the two motifs and their reverse complements (RC) is shown below the alignment. See Table 1 for haplotype distribution among species.
Figure 1 from: Ballardini M, Mercuri A, Littardi C, Abbas S, Couderc M, Ludeña B, Pintaud J (2013) The chloroplast DNA locus psbZ-trnfM as a potential barcode marker in Phoenix L. (Arecaceae). ZooKeys 365: 71-82. https://doi.org/10.3897/zookeys.365.5725
Figure 1 - The sequenced cpDNA psbZ-trnfM region.The location of PCR primers used and polymorphisms found in this study are shown. DNA fragment length refers to the Phoenix dactylifera cv. Khalas cpDNA sequence (Yang et al. 2010), characterised by a 4-repetitions minisatellite haplotype (NCBI Reference Sequence: NC_013991.2).
Chloroplast DNA barcoding genes matK and psbA-trnH are not suitable for species identification and phylogenetic analyses in closely related pines
<p>Multispecies alignment of <em>matK</em> sequences used in the study in fasta format.</p> <p>Multispecies alignment of <em>trnH-psbA </em>sequences used in the study in fasta format.</p> <p>Multispecies alignment of <em>rbcL</em> sequences used in the study in fasta format.</p> <p> </p>
Data from: Phylogeographical patterns of an alpine plant, Rhodiola dumulosa (Crassulaceae), inferred from chloroplast DNA sequences
Open the record for dataset details and reuse information.
Fig. 5 O in A phylogeny of Cephaloziaceae (Jungermanniopsida) based on nuclear and chloroplast DNA markers
Fig. 5 O. yunnanense, sp. nov. A Shoot in dorsal view. B Shoot in ventral view. C Leaves. D Underleaves. E Marginal leaf cells. F Cross section of stem [all from holotype]
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