Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
191
datasets available to search
ShareScore release 0.9.0
Dataset results
191 results for “cis-regulatory element”
Identification of cis-regulatory elements affecting pancreatic Islet maturation using chromatin accessibility variations
GEO Series GSE122747. Rattus norvegicus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
High activity of a broad panel of housekeeping and tissue-specific cis-regulatory elements depends on a subset of ETS proteins
GEO Series GSE88702. Mus musculus. 23 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Third-party reanalysis.
Multi-omic Analysis of Developing Human Retina and Organoids Reveals Cell-Specific Cis-Regulatory Elements and Mechanisms of Non-Coding Genetic Disease Risk.
GEO Series GSE183684. Homo sapiens. 51 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
MAPT expression is mediated by long-range interactions with cis-regulatory elements [HiC and Capture-C]
GEO Series GSE228118. Homo sapiens. 21 samples. Type: Other.
An in vivo repertoire of zebrafish cardiomyocyte-specific cis-regulatory elements
GEO Series GSE252152. Danio rerio. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Xenobiotic-induced perturbations of cis-regulatory elements associated with sensitivity to liver tumor promotion
GEO Series GSE131344. Mus musculus. 36 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq
GEO Series GSE256232. Homo sapiens; Mus musculus. 67 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Parallel characterization of cis-Regulatory Elements for Multiple Genes using CRISPRpath [Cut&Tag]
GEO Series GSE166836. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RAR/RXR binding dynamics distinguishes pluripotency from differentiation-associated cis-regulatory elements
GEO Series GSE56893. Mus musculus. 23 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Detection of gene cis-regulatory element perturbations in single-cell transcriptomes
GEO Series GSE117053. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq [Mouse KAS-ATAC-seq]
GEO Series GSE256231. Mus musculus. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Dissection of nucleosome remodeling at cis-regulatory elements in stimulated macrophages [ChIP-Seq]
GEO Series GSE119691. Mus musculus. 30 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
An in vivo repertoire of zebrafish cardiomyocyte-specific cis-regulatory elements [RNA-Seq]
GEO Series GSE252151. Danio rerio. 6 samples. Type: Expression profiling by high throughput sequencing.
Looping of upstream cis-regulatory elements is required for CFTR expression in human airway epithelial cells
GEO Series GSE132808. Homo sapiens. 30 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Dynamic Activity in cis-Regulatory Elements of Leukocytes Identifies Transcription Factor Activation and Stratifies COVID-19 Severity in ICU Patients [csRNA-seq]
GEO Series GSE221065. Homo sapiens. 194 samples. Type: Other.
Characterizing heterogeneous cis-regulatory elements in gene regulatory programs associated with breast cancer
GEO Series GSE299408. Homo sapiens. 38 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Global identification of the gene networks and cis-regulatory elements of the cold response in zebrafish
GEO Series GSE62221. Danio rerio. 24 samples. Type: Expression profiling by high throughput sequencing.
Dissection of nucleosome remodeling at cis-regulatory elements in stimulated macrophages [ATAC-Seq]
GEO Series GSE119690. Mus musculus. 15 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ILC1 lineage identity is determined by a cis-regulatory element marked by a novel lncRNA [ATAC-seq]
GEO Series GSE101457. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Characterization of cis-regulatory elements of effector ISGs
GEO Series GSE172376. Mus musculus. 61 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.