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Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
76
datasets available to search
ShareScore release 0.9.0
Dataset results
76 results for “de novo sequencing”
Native single molecule sequencing and de novo assembly of Hepatitis B Virus to detect 5mCpG
GEO Series GSE162518. Homo sapiens. 6 samples. Type: Methylation profiling by high throughput sequencing.
Sequencing de novo Mu transposon insertions across maize tissues
GEO Series GSE279993. Zea mays. 56 samples. Type: Other.
Flanking sequence preference modulates de novo DNA methylation in the mouse genome
GEO Series GSE151992. Mus musculus. 6 samples. Type: Methylation profiling by high throughput sequencing.
Transcriptome Sequencing and De Novo Analysis of a Cytoplasmic Male Sterile Line and Its Near-Isogenic Restorer Line in Chili Pepper (Capsicum annuum L.)
GEO Series GSE45431. Capsicum annuum. 2 samples. Type: Expression profiling by high throughput sequencing.
Bulk RNA sequencing of de novo and radiation-recurrent head and neck squamous cell carcinoma tumors
GEO Series GSE304200. Homo sapiens. 33 samples. Type: Expression profiling by high throughput sequencing.
DeepSTARR predicts enhancer activity from DNA sequence and enables the de novo design of synthetic enhancers [Drosophila oligo UMI-STARR-seq]
GEO Series GSE183937. Drosophila melanogaster; synthetic construct. 12 samples. Type: Other.
Comparison of de novo refilled to original lung interstitial macrophages by bulk RNA-sequencing
GEO Series GSE194020. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
De novo transcriptome sequencing in Anopheles aquasalis using RNA-seq
GEO Series GSE124997. Anopheles aquasalis. 9 samples. Type: Expression profiling by high throughput sequencing.
Next generation sequencing and de novo transcriptome analysis of Papilio clytia and Atrophaneura mencius larvae upon lipopolysaccharide challenge
GEO Series GSE142679. Papilio clytia; Byasa mencius. 4 samples. Type: Expression profiling by high throughput sequencing.
Bulk RNA-sequencing of wild-type (Ler) and dme-2 calli harvested 7 days after incubation on callus-inducing medium and of de novo regenerated shoots harvested 14 days after incubation on shoot-inducin
GEO Series GSE269609. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
Molecular analysis of population and De Novo transcriptome sequencing of Thai medaka, Oryzias minutillus (Teleostei: Adrianichthyidae)
GEO Series GSE133888. Oryzias minutillus. 2 samples. Type: Expression profiling by high throughput sequencing.
De novo transcriptome sequencing of rough lemon leaves (Citrus jambhiri Lush.) in response to Plenodomus tracheiphilus infection
GEO Series GSE164096. Citrus jambhiri. 6 samples. Type: Expression profiling by high throughput sequencing.
Analysis of the transcriptome response to drought in Larix kaempferi using single-molecule long read isoform sequencing with de novo RNA-seq reads [RNA-Seq]
GEO Series GSE154534. Larix kaempferi. 6 samples. Type: Expression profiling by high throughput sequencing.
De Novo Transcriptome Sequencing for Tetramorium bicarinatum: The first comprehensive venom gland transcriptome analysis from an ant species.
GEO Series GSE53988. Tetramorium bicarinatum. 2 samples. Type: Expression profiling by high throughput sequencing.
A novel aCGH method for non-model organisms for assessing genomes and de-novo transcriptome sequencing reads
GEO Series GSE52122. Danio rerio; Staphylococcus aureus. 45 samples. Type: Genome variation profiling by genome tiling array; Genome variation profiling by array.
A novel aCGH method for non-model organisms for assessing genomes and de-novo transcriptome sequencing reads (Danio rerio)
GEO Series GSE52121. Danio rerio. 12 samples. Type: Genome variation profiling by array.
De novo sequencing of transcriptome of Sf9 cells after Bm-15 overexpression and repression
GEO Series GSE98196. Spodoptera frugiperda. 3 samples. Type: Expression profiling by high throughput sequencing.
A novel aCGH method for non-model organisms for assessing genomes and de-novo transcriptome sequencing reads (Staphylococcus aureus)
GEO Series GSE51148. Staphylococcus aureus. 33 samples. Type: Genome variation profiling by genome tiling array.
De novo RNA sequencing of the gut and cerebral ganglion of Dendrobaena veneta exposed to carbamazepine
GEO Series GSE268697. Dendrobaena veneta. 18 samples. Type: Expression profiling by high throughput sequencing.
Molecular mechanism of ethylene stimulation of latex yield in rubber tree (Hevea brasiliensis) revealed by de novo sequencing and transcriptome analysis
GEO Series GSE78145. Hevea brasiliensis. 3 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.