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Time series of optical measurements (absorbance, fluorescence) for Beaverdam Reservoir, Carvins Cove Reservoir, and Falling Creek Reservoir in southwestern Virginia, USA 2019-2025
Depth profiles and surface dissolved samples analyzed for optical analyses (absorbance, fluorescence) were sampled from 2019 to 2025 in three drinking water reservoirs located in southwestern Virginia, USA including Beaverdam Reservoir (Vinton, Virginia), Carvins Cove Reservoir (Roanoke, Virginia), and Falling Creek Reservoir (Vinton, Virginia). The reservoirs are owned and operated by the Western Virginia Water Authority as either primary or secondary drinking water sources for Roanoke, Virginia. The dataset consists of depth profiles at the deepest site of each reservoir, surface water samples from reservoir tributaries, and additional samples at within-reservoir sites. In Beaverdam and Falling Creek Reservoir, we collected depth profiles, gauged weir, and wetland samples approximately fortnightly throughout the summer stratified period (June 2019 - November 2019) and surface samples approximately monthly from May 2019 to October 2019 and in March 2020. Beaverdam Reservoir depth samples were additionally collected in summer 2022. We collected depth profiles and tributary samples monthly to seasonally in Carvins Cove Reservoir from late 2021 - 2023. From May 2024 - April 2025, we sampled depth profiles at multiple transects across the reservoir and surface water samples in one tributary approximately monthly at Carvins Cove. Absorbance was measured as colored dissolved organic matter (CDOM) using a spectrophotometer. Fluorescence was measured as fluorescent dissolved organic matter (fDOM) using a spectrofluorometer as excitation emission matrices (EEMs). Absorbance and fluorescence results are reported along with PARAFAC model results applied to the collected EEMs samples. Data visualization and quality assurance/quality control (QA/QC) scripts accompany the data package.
Winterberry: Fruit retention in fall and winter in 2016-2019 for four shrub species across Alaska
This dataset contains observations of fruit retention and state for Rosa acicularis (prickly rose), Empetrum nigrum (crowberry or blackberry), Vaccinium vitis-idaea (lowbush cranberry or lingonberry) and Viburnum edule (highbush cranberry). Data were collected at 47 sites in 25 communities in 6 ecoregions across Alaska, primarily by youth groups. Ecoregions include Bering taiga, Bering tundra, intermontane boreal, Alaska range transition, Aleutian meadows, and coastal rainforest. Observations were made approximately weekly during snow-free periods in fall and (at some sites) spring. At most sites only one species was monitored but some sites include observations on two species. Data consist of counts of unripe, ripe, rotten, dry, and damaged fruits. The dataset consists of one spreadsheet for each species and a file describing the location and habitat of each site.
Fall 2020 crab population monitoring: mid-marsh and creek bank abundance based on crab hole counts at GCE marsh, monitoring sites 1-10
This data set is the Fall 2020 estimate of crab densities at the GCE-LTER marsh sites used for population monitoring. Crab abundance was determined by counting the number of crab holes within a 625 cm^2 quadrat and converting the counts to number per square meter. Counts were made in the mid-marsh and creek bank zones (n = 4 per zone) at GCE sites 1 through 10. Note that this census method does not differentiate which species made a particular hole and therefore only estimates total burrowing crab abundance, potentially including species Uca pugnax, Uca minax, Uca pugilator, Armases cinereum, Eurytium limosum and Sesarma reticulatum. Crab holes that are not actively maintained are quickly covered by tidal activity and other sediment disturbances, therefore plugged holes were assumed to be unoccupied and excluded from the counts.
Mollusc population abundance monitoring: Fall 2020 mid-marsh and creekbank infaunal and epifaunal mollusc abundance based on collections from GCE marsh, monitoring sites 1-10
This data set is the Fall 2020 estimate of infaunal and epifaunal mollusc abundance at the GCE-LTER marsh sites used for population monitoring. Species abundance was determined by hand-collecting all the infaunal and epifaunal molluscs from within quadrats of known area in mid-marsh and creekbank zones (n = 4 quadrats per zone) at all sites. The molluscs were returned to the lab, fixed in ethanol, transferred to and preserved in ethanol, counted and measured (size data is reported separately). The counts were converted to number per square meter. Gastropod species are listed first, followed by bivalve species. Size distribution data for these collections may be found in the GCE-LTER data set INV-GCEM-2107a.
Mollusc population size distribution monitoring: Fall 2020 mid-marsh and creekbank infaunal and epifaunal mollusc size distributions based on collections from GCE marsh monitoring sites 1-10
This data set is the Fall 2020 report of infaunal and epifaunal mollusc species size distributions at the GCE-LTER marsh sites used for population monitoring. Infaunal and epifaunal molluscs were hand-collected from within quadrats of known area from mid-marsh and creekbank zones (n = 4 quadrats per zone) at all sites. The molluscs were returned to the lab, preserved in ethanol, measured and counted (count data is reported separately). Length of each measurable individual was determined using calipers or an ocular micrometer mounted in a stereomicroscope. Species abundance and density data for these collections may be found in the GCE-LTER data set INV-GCEM-2107. Numbers of individuals of each species in the abundance data file may not correspond exactly to the numbers of individuals in the size data file because some individuals may not have been measureable.
Spring and Fall plant cover across grassland-shrubland ecotones at 3 sites in the Jornada Basin, 2005-ongoing
The objective of this ongoing study is to investigate how pulses of precipitation translate into pulses of plant aboveground net primary productivity (ANPP) across grassland to shrubland ecotones in the northern Chihuahuan Desert. This dataset consists of ocular plant cover and height measurements to be used for estimating aboveground net primary in three habitat vegetation zones (grassland, ecotone, and shrubland) at three grassland-to-shrubland ecotone sites in the Jornada Basin, Dona Ana County, New Mexico, USA. Sampling is conducted twice a year: in the spring before the growing season and in the fall after the growing season.
Time series of in situ Uv-Vis absorbance spectra and high-frequency predictions of total and soluble Fe and Mn concentrations measured at multiple depths in Falling Creek Reservoir (Vinton, VA, USA) in 2020 and 2021
High-frequency measurements of light absorbance were collected at multiple depths in Falling Creek Reservoir (FCR; Vinton, VA, USA) using a s::can Spectrolyser UV-Visible spectrophotometer coupled with a multiplexor pumping system. The system pumps water samples from individual depths into a flow-through cuvette where the UV-vis absorbance spectra of the sample are measured by the spectrophotometer. The system used in our study collected measurements of light absorbance every 2.5 nm wavelengths from 200 nm to 732.5 nm (optical path length of 10 mm) approximately at an hourly time step for seven monitoring depths in the reservoir. Data was collected during two periods; the first deployment (16 October to 9 November 2020) was to observe changes in Fe and Mn concentrations before, during, and after reservoir fall turnover and the second deployment (26 May to 21 June 2021) was to observe the effects of engineered hypolimnetic oxygenation on Fe and Mn concentrations. Partial least squares regression models were developed to generate predictions of total and soluble Fe and Mn concentrations based on the correlation between absorbance spectra and sampling data.
Crustacean and rotifer density and biomass for Beaverdam Reservoir, Falling Creek Reservoir, Carvins Cove Reservoir, Gatewood Reservoir, and Spring Hollow Reservoir in southwestern Virginia, USA 2014-2025
Crustacean and rotifer density and biomass were measured from 2014 to 2025 in five drinking water reservoirs in southwestern Virginia, USA. These reservoirs are: Beaverdam Reservoir (Vinton, Virginia), Falling Creek Reservoir (Vinton, Virginia), Carvins Cove Reservoir (Roanoke, Virginia), Gatewood Reservoir (Pulaski, Virginia), and Spring Hollow Reservoir (Salem, Virginia). Beaverdam, Falling Creek, Carvins Cove, and Spring Hollow Reservoirs are owned and operated by the Western Virginia Water Authority as primary or secondary drinking water sources for Roanoke, Virginia, and Gatewood Reservoir is a drinking water source for the Town of Pulaski, Virginia. The dataset consists of integrated vertical tow samples from the whole water column, just the epilimnion, and just the hypolimnion (as the difference between the full water column and epilimnion tows), as well as discrete depth measurements collected with a Schindler trap. Most samples were collected at the deepest site of each reservoir adjacent to the dam. Sampling frequency and duration varied among reservoirs and years and included weekly to monthly routine monitoring as well as intensive 24-hour sampling campaigns. In 2014-2016, zooplankton samples were collected approximately fortnightly in the spring, summer, and autumn months at Beaverdam Reservoir, Carvins Cove Reservoir, and Gatewood Reservoirs. Falling Creek Reservoir samples were collected weekly to monthly in spring and summer 2014, and Spring Hollow Reservoir samples were collected approximately fortnightly in the spring, summer, and autumn months of 2015 and 2016. In 2019, zooplankton samples were collected approximately weekly to monthly from April to November at Beaverdam Reservoir and April to September at Falling Creek Reservoir. In 2020, zooplankton samples were collected approximately weekly to monthly from May to December at Beaverdam Reservoir and June to September at Falling Creek Reservoir. In 2021, zooplankton were collected monthly from M
Water chemistry time series for Beaverdam Reservoir, Carvins Cove Reservoir, Falling Creek Reservoir, Gatewood Reservoir, and Spring Hollow Reservoir in southwestern Virginia, USA 2013-2024
Depth profiles of dissolved organic and inorganic carbon and total and dissolved nitrogen and phosphorus were sampled from 2013-2024 in five drinking water reservoirs in southwestern Virginia, USA. The five drinking water reservoirs are: Beaverdam Reservoir (Vinton, Virginia), Carvins Cove Reservoir (Roanoke, Virginia), Falling Creek Reservoir (Vinton, Virginia), Gatewood Reservoir (Pulaski, Virginia), and Spring Hollow Reservoir (Salem, Virginia). Beaverdam, Carvins Cove, Falling Creek, and Spring Hollow Reservoirs are owned and operated by the Western Virginia Water Authority as primary or secondary drinking water sources for Roanoke, Virginia, and Gatewood Reservoir is a drinking water source for the town of Pulaski, Virginia. The dataset consists of depth profiles of water chemistry samples measured at the deepest site of each reservoir adjacent to the dam. Additional water chemistry samples were collected at a gauged weir on Falling Creek Reservoir's primary inflow tributary, as well as multiple upstream, inflow, and outflow sites at Falling Creek Reservoir 2014-2024 and Beaverdam Reservoir in 2019, 2020, and 2022. Inflow sites at Carvins Cove Reservoir were sampled from 2020-2024, and additional within-reservoir sites were sampled in 2021-2024. The water column samples at Falling Creek Reservoir and Beaverdam Reservoir were collected approximately fortnightly from March-April, weekly from May-October, and monthly from November-February. Water column samples at Carvins Cove Reservoir were collected approximately fortnightly from May-August in most years, and approximately fortnightly from 2014-2016 in Gatewood and Spring Hollow Reservoirs, though sampling frequency and duration varied among reservoirs and years. A few additional samples collected in 2025 from Falling Creek Reservoir and Carvins Cove Reservoir are included in this dataset as they were analyzed with 2024 samples.
Time series of total metal and nutrient loads into Falling Creek Reservoir in southwestern Virginia, USA from 2019-2024
Metal and nutrient loads were calculated from 2019-2024 from the inflow stream to Falling Creek Reservoir (FCR), a drinking water reservoir located in Vinton, Virginia, USA. The reservoir is owned and operated by the Western Virginia Water Authority and is managed as a secondary drinking-water source for the city of Roanoke, VA. Only Fe, Mn, and nutrients (TN and TP) were analyzed and calculated in 2019. The full suite of metals (Li, Na, Mg, Al, K, Ca, Fe, Mn, Cu, Sr, Ba) and nutrients were analyzed from 2020-2024. The loads that were collected using an ISCO automated sampler located at the main inflow tributary to FCR. Sampling frequency was approximately fortnightly from spring to fall (March - November). Load calculations were performed using the calculated cumulative flow over the sampling period from the ISCO and the analyzed total metal and nutrient concentrations. Please note we are publishing this data package before the nutrient samples have been analyzed, but will be included in later versions.
Infauna from the York River Estuary, Chesapeake Bay, Spring Fall 2022
Sediment macroinfauna were sampled at 7 sites in the York River Estuary in Spring and Fall, 2022, as part of a project relating infaunal community structure to physical properties of sediments.
Presence/absence of new snow-fall scored from time-lapse photography collected near Toolik Field Station, Alaska, summers 2012-2016
This data set describes the presence/absence of new snowfall approximated daily using time -lapse photography images near Toolik Field Station during summers from 2012 to 2016 under National Science Foundation (NSF) Office of Polar Programs ARC 0908444 (to Laura Gough), ARC 0908602 (to Natalie Boelman), and ARC 0909133 (to John Wingfield). Additional cameras funded by other grants were also used for scoring including multiple Toolik EDC timelapse images taken at Toolik, Atigun Ridge, and Imnavait. Additional data were scored from time lapse photography taken by the Deegan and Urban labs (Office of Polar Programs #0902153 and #1417664). All data are associated with publication DOI: 10.1111/jav.01712.
Fall 2007 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
A quadrat survey was conducted in October 2007 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003 and 2004 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set with additional details recorded in GCE data set PLT-GCEM-1801. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
Fall 2007 plant monitoring survey -- biomass calculated from shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
The biomass of plants surveyed in permanent plots at 10 GCE LTER sampling sites in October 2007 was estimated based on allometric relationships between biomass and shoot height and flowering status derived for each site, zone, and species in October 2002 and October 2007. Biomass was only calculated for dominant species, including Spartina alterniflora, S. cynosuroides, Juncus roemerianus, and Zizaniopsis miliacea. This data set is based on GCE plant monitoring survey data set PLT-GCEM-0801a, and allometric relationships were based on GCE data sets PLT-GCEM-0211b, PLT-GCEM-0711, and PLT-GCEM-2011.
Fall 2008 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
A quadrat survey was conducted in October 2008 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003 and 2004 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set with additional disturbance details recorded in GCE data set PLT-GCEM-1801. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
Fall 2008 plant monitoring survey -- biomass calculated from shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
The biomass of plants surveyed in permanent plots at 10 GCE LTER sampling sites in October 2008 was estimated based on allometric relationships between biomass and shoot height and flowering status derived for each site, zone, and species in October 2002 and October 2008. Biomass was only calculated for dominant species, including Spartina alterniflora, S. cynosuroides, Juncus roemerianus, and Zizaniopsis miliacea, as well as rarer species including Scirpus spp, Panicum spp. and Typha angustifolia. This data set is based on GCE plant monitoring survey data set PLT-GCEM-0812a, and allometric relationships were based on GCE data sets PLT-GCEM-0211b, PLT-GCEM-0711 and PLT-GCEM-2011.
Fall 2009 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
A quadrat survey was conducted in October 2009 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003 and 2004 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set with additional details recorded in GCE data set PLT-GCEM-1801. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
Fall 2009 plant monitoring survey -- biomass calculated from shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
The biomass of plants surveyed in permanent plots at 10 GCE LTER sampling sites in October 2009 was estimated based on allometric relationships between biomass and shoot height and flowering status derived for each site, zone, and species in October 2002 and October 2008. Biomass was only calculated for dominant species, including Spartina alterniflora, S. cynosuroides, Juncus roemerianus, and Zizaniopsis miliacea, as well as rarer species including Scirpus spp, Panicum spp. and Typha angustifolia. This data set is based on GCE plant monitoring survey data set PLT-GCEM-1004a, and allometric relationships were based on GCE data sets PLT-GCEM-0211b, PLT-GCEM-0711, and PLT-GCEM-2011.
Fall 2010 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
A quadrat survey was conducted in October 2010 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003, 2004, 2009 and 2010 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set with additional details recorded in GCE data set PLT-GCEM-1801. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
Fall 2010 plant monitoring survey -- biomass calculated from shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
The biomass of plants surveyed in permanent plots at 10 GCE LTER sampling sites in October 2010 was estimated based on allometric relationships between biomass and shoot height and flowering status derived for each site, zone, and species in October 2002 and October 2008. Biomass was only calculated for dominant species, including Spartina alterniflora, S. cynosuroides, Juncus roemerianus, and Zizaniopsis miliacea, as well as rarer species including Scirpus spp, Panicum spp. and Typha angustifolia. This data set is based on GCE plant monitoring survey data set PLT-GCEM-1010a, and allometric relationships were based on GCE data sets PLT-GCEM-0211b, PLT-GCEM-0711, and PLT-GCEM-2011.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.