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CMS DoubleMuParked dataset from 2012 in simple little endian binary format
<p>The Muon.bin file contains in a binary data little-endian format the dataset from Ref [1]. This dataset contains about 60 millon data events from the CMS detector taken in 2012 during Run B and C.</p> <p>The file format is described in the companion file Muon.txt.</p> <p>[1] Wunsch, Stefan; (2019). DoubleMuParked dataset from 2012 in NanoAOD format reduced on muons. CERN Open Data Portal. DOI:<a href="http://doi.org/10.7483/OPENDATA.CMS.LVG5.QT81">10.7483/OPENDATA.CMS.LVG5.QT81</a></p>
Microphontes dichotomous, pathway key in SDD-format
<p>Dichotomous, pathway key to species of Microphontes developed with Lucid Builder v4 in XML Structure of Descriptive Data (SDD) format.</p>
Anasillomos dichotomous, pathway key in SDD-format
<p>Dichotomous, pathway key to species of Anasillomos developed with Lucid Builder v4 in XML Structure of Descriptive Data (SDD) format.</p>
DADA2 formatted eHOMD 16S rRNA gene sequences databse
<p>eHOMD Refseq database (V15.22) formated to be used with dada2 <em>i.e.</em>, dada2::assignTaxonomy(seqs, "eHOMD_RefSeq_dada2_V15.22.fasta.gz" ) and dada2::addSpecies(taxa, "eHOMD_RefSeq_dada2_assign_species_V15.22.fasta.gz", verbose=TRUE)</p> <p>Alternatively, you could use the metabaRpipe R package to directly update the taxonomy of a phyloseq object see: https://github.com/fconstancias/metabaRpipe#2-addingreplacing-taxonomical-table-in-a-phyloseq-object</p> <p>Example below:<br> source("https://raw.githubusercontent.com/fconstancias/metabaRpipe-source/master/Rscripts/functions.R")</p> <p>readRDS("dada2/phyloseq.RDS") %>%<br> phyloseq_dada2_tax(physeq = .,<br> threshold = 60,<br> db ="~/metabaRpipe/databases/eHOMD_RefSeq_dada2_V15.22.fasta.gz",<br> db_species ="~/metabaRpipe/databases/eHOMD_RefSeq_dada2_assign_species_V15.22.fasta.gz",<br> nthreads = 2,<br> full_return = FALSE) -> physeq_eHOMD_tax</p> <p> </p> <p> </p>
Dataset for presentation Le Digital Humanities nei corsi di studio e di dottorato: questioni formative, disciplinari, istituzionali
<p>This is the dataset upon which the slides of my talk "Le Digital Humanities nei corsi di studio e di dottorato: questioni formative, disciplinari, istituzionali" was based.</p> <ul> <li><strong><em>Singoli insegnamenti di informatica umanistica in Italia (responses).csv </em></strong>is a CSV file including the 'raw' replies of the survey mentioned in the slides. The column "User display name" represents the user filling the survey. It is always "Anonymous user", except when I replyied myself: in this case it is "ilbuonme"</li> <li><strong><em>insegnamenti.ods</em></strong> is an ODS spreadsheet including data and graphs on individual Digital Humanities classes in Italian universities. This spreadsheet derives from the CSV file, but includes additional information deriving from my personal research.</li> <li><em><strong>cds.ods</strong></em> is an ODS spreadsheet including data and graphs on BA and MA programs in the Digital Humanities in Italy. It is not related to the CSV file.</li> </ul>
Compound I Formation and Reactivity in Dimeric Chlorite Dismutase: Impact of pH and the Dynamics of the Catalytic Arginine
<ul> <li><strong>Data type</strong>: spectroscopic measurements (UV-visible, ECD, EPR), enzyme activity measurements, mass spectrometry, spectroelectrochemistry and data analysis.</li> <li>Files are in<strong> .DTA, .DSC, .xlsx, .m, .mat, .BSW, .csv, .txt, .dsx, .pdf, .uds </strong>formats</li> <li>Information on <strong>origin of the data</strong>: <ul> <li>EPR spectroscopic measurements in <strong>DTA </strong>and<strong> DSC</strong> formats</li> <li>EPR spectroscopic simulation and analyses in <strong>m </strong>and<strong> mat</strong> format</li> <li>Analysis of Rapid Freeze-Quench calibration curve is in <strong>xlsx</strong> format</li> <li>UV-vis spectroscopic measurements in <strong>csv, xlsx, txt, uds and dsx</strong> format</li> <li>ECD measurements in <strong>csv, xlsx and dsx</strong> format</li> <li>Enzyme activity data in <strong>csv and xlsx</strong> format</li> <li>Mass spectrometry data in <strong>pdf and xlsx</strong> format</li> <li>Spectroelectrochemistry data in <strong>BSW</strong> and <strong>xlsx</strong> format</li> </ul> </li> <li>The data are <strong>generated</strong> by: <ul> <li>UV−vis spectra were recorded using a Cary 60 UV–vis spectrophotometer (Agilent) and a U-3900 spectrophotometer (Hitachi, Mannheim, Germany).</li> <li>Electronic circular dichroism spectroscopy was performed using Chirascan (Applied Photophysics, Leatherhead, UK).</li> <li>Rapid Freeze-Quench of EPR sample was performed with the use of a device from BioLogic (Grenoble, France), consisting of an SFM-2000 stopped-flow unit and an MPS-70 controller unit, combined with a freeze-quench sample collector adapted for EPR tubes. The ejected volumes and flow rate were controlled by the BioLogic BIOKINE software, v. 4.72.</li> <li>X-Band CW-EPR experiments were performed on X-band ELEXSYS E580 spectrometer (Bruker BioSpin GmbH) operating at a microwave frequency of ∼9.4 GHz and equipped with a standard TE102 cavity and a liquid He cryostat (Oxford Inc.)</li> <li>Enzyme activity was measured polarographically following the release of O<sub>2</sub> by using a Clark-type oxygen electrode (Oxygraph Plus; Hansatech Instruments, Norfolk, UK).</li> <li>Stopped-flow spectroscopy measurements were performed with a SX-18MV or Pi-star from Applied Photophysics using either a diode array detector or a monochromator and photomultiplier detector.</li> <li>Mass spectrometry analysis was performed with an ion-trap mass spectrometer (amaZon speed ETD, Bruker) equipped with the standard ESI source in positive ion, DDA mode (i.e., switching to MSMS mode for eluting peaks).</li> <li>All spectroelectrochemistry experiments were conducted in a homemade OTTLE (optical transparent thin-layer spectroelectrochemical) cell. In detail, the three-electrode configuration consisted of a gold minigrid working electrode (Buckbee-Mears, Chicago, IL), a homemade Ag/AgCl/KCl<sub>sat</sub> microreference electrode separated from the working solution by a Vycor set, and a platinum wire as the counter electrode. UV−vis spectra were recorded using a Varian Cary C50 spectrophotometer.</li> </ul> </li> </ul> <p> </p> <p> </p> <ul> <li>If the dataset includes multiple files that relate to each other: <ul> <li>Files in <strong>PARACAT_WP3_20230302_01_EPR </strong>folder includes EPR spectroscopic measurements and computer simulations/analyses, original data are in <strong>DTA/DSC</strong> formats; files in <strong>m</strong> format were used to process the data.</li> <li>Files in <strong>PARACAT_WP3_20230302_02_UVVIS </strong>folder includes sequential and non-sequential stopped flow data, measured with detection by photodiode array or monochromator (time traces): original data is in <strong>dsx and csv </strong>format<strong>, xlsx </strong>format contains processed data; conventional photometric data is originally in <strong>txt and uds </strong>format, <strong>xlsx </strong>format contains processed data</li> <li>Files in <strong>PARACAT_WP3_20230302_03_ECD</strong> folder contain ECD spectra: original data is in <strong>dsx and csv </strong>format<strong>, xlsx </strong>format contains processed data</li> <li>Files in <strong>PARACAT_WP3_20230302_04_Enzyme activity </strong>folder contain polarographically detected changes in dioxygen concentration, due to enzyme activity: original data is in <strong>csv </strong>format<strong>, xlsx </strong>format contains processed data</li> <li>Files in <strong>PARACAT_WP3_20230302_05_MassSpec </strong>folder contain mass spectrometry data for the MNP assay: original data is in <strong>pdf </strong>format<strong>, xlsx </strong>format contains processed data</li> <li>Files in <strong>PARACAT_WP3_20230302_06_Spectroelectrochemistry </strong>folder includes spectroelectrochemistry measurements and computer analyses, original data are in <strong>BSW</strong> formats; files in <strong>xlsx</strong> format were used to process the data.</li> </ul> </li> </ul> <p> </p> <p>NB. See the “READ ME” text file in each subfolder for more detailed information on files organization.</p> <p> </p> <ul> <li>Information on: <ul> <li><strong>Abbreviations:</strong> <ul> <li>, chlorite dismutase; <strong><em>C</em>Cld</strong>, chlorite dismutase from Cyanothece sp. PCC7425; <strong>CcP</strong>, cytochrome c peroxidase;<strong> DaCld</strong>, chlorite dismutase from <em>Dechloromonas aromatica</em>; <strong>E°′</strong>, standard reduction potential; <strong>ECD</strong>, electronic circular dichroism; <strong>EPR</strong>, electron paramagnetic resonance; <strong>HRP</strong>, horseradish peroxidase; <strong>LPO</strong>, lactoperoxidase; <strong>MNP</strong>, 2-methyl-2-nitrosopropane; <strong>MPO</strong>, myeloperoxidase; <strong>PAA</strong>, peracetic acid; <strong>RFQ</strong>, rapid freeze-quench.</li> </ul> </li> </ul> </li> </ul> <p> </p> <ul> <li><strong>Units of measurement</strong>: <ul> <li>Concentration: <strong>mM</strong> (millimolar), <strong>µM</strong> (micromolar), <strong>nM</strong> (nanomolar), <strong>mg/mL</strong> (milligrams per milliliter)</li> <li>Molecular mass: <strong>Da</strong> (Dalton)</li> <li>Absorptivity: <strong>M<sup>-1</sup></strong> <strong>cm<sup>-1</sup></strong></li> <li>Volume: <strong>mL</strong> (milliliters), <strong>µL </strong>(microliters), <strong>nL</strong> (nanoliters)</li> <li>Wavelength:<strong> nm</strong> (nanometers)</li> <li>Temperature:<strong> °C</strong> (Celsius degrees), <strong>K</strong> (Kelvin degrees)</li> <li>Time:<strong> ms</strong> (milliseconds), <strong>s</strong> (seconds), <strong>min</strong> (minutes), <strong>h</strong> (hours),</li> <li>Ellipticity: millidegrees</li> <li>Frequency: <strong>GHz</strong> (gigahertz), <strong>kHz</strong> (kilohertz)</li> <li>Power: <strong>mW</strong> (milliwatt)</li> <li>Magnetic field: <strong>mT</strong> (milliTesla)</li> <li>Reduction potential: <strong>mV </strong>(milliVolts)</li> </ul> </li> </ul>
Dataset for Reaction-Induced Formation of Stable Mononuclear Cu(I)Cl Species on Carbon for Low-Footprint Vinyl Chloride Production
<p>This dataset complements the publication entitled "Reaction-Induced Formation of Stable Mononuclear Cu(I)Cl Species on Carbon for Low-Footprint Vinyl Chloride Production" by Dario Faust Akl, Georgios Giannakakis, Andrea Ruiz-Ferrando, Mikhail Agrachev, Juan D. Medrano-García, Gonzalo Guillén-Gosálbez, Gunnar Jeschke, Adam H. Clark, Olga V. Safonova, Sharon Mitchell, Núria López, Javier Pérez-Ramírez.</p>
SAMI3 data in netCDF format (2019-Mar-28)
<p>SAMI3 (Sami3 is Also a Model of the Ionosphere) is a seamless, three-dimensional, physics-based model of the ionosphere (Huba et al, 2008). It is based on SAMI2, a two-dimensional model of the ionosphere (Huba et al., 2000). <br><br>SAMI3 models the plasma and chemical evolution of seven ion species (H⁺, He⁺, N⁺, O⁺, N⁺₂, NO⁺ and O⁺₂). The temperature equation is solved for three ion species (H⁺, He⁺ and O⁺) and for the electrons. Ion inertia is included in the ion momentum equation for motion along the geomagnetic field. This is important in modeling the topside ionosphere and plasmasphere where the plasma becomes collisionless. <br><br>SAMI3 includes 21 chemical reactions and radiative recombination, and uses a nonorthogonal, nonuniform, fixed grid for the magnetic latitude range +/- 89 degrees.. <br><br><b>Drivers</b><br>Neutral composition, temperature, and winds: NRLMSISE00 (Picone et al., 2002) and HWM14 (Drob et al., 2015). <br>Solar radiation: Flare Irradiance Spectral Model version 2 (FISM v2)<br>Magnetic field: Richmond apex model [Richmond, 1995]. <br>Neutral wind dynamo electric field: Determined from the solution of a 2D potential equation [Huba et at., 2008]. <br>For the SAMI3/Weimer configuration: High latitude electric field: calculated from the empirical Weimer model for the potential. <br>For the SAMI3/AMPERE configuration: High latitude electric field: calculated using the Magnetosphere-Ionosphere Coupling solver (MIX) developed by Merkin and Lyon (2010). The inputs to MIX are SAMI3's internal conductances, plus field-aligned current observations from Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE), derived from the 66+ satellite Iridium NEXT constellation's engineering magnetometer data. This potential calculation is described in Chartier et al (2022). <br><br>For ease of use, SAMI3 output is remapped to a regular grid using the Earth System Modeling Framework by Hill et al (2004)</p>
SAMI3 data in netCDF format (2019-Mar-29)
<p>SAMI3 (Sami3 is Also a Model of the Ionosphere) is a seamless, three-dimensional, physics-based model of the ionosphere (Huba et al, 2008). It is based on SAMI2, a two-dimensional model of the ionosphere (Huba et al., 2000). <br><br>SAMI3 models the plasma and chemical evolution of seven ion species (H⁺, He⁺, N⁺, O⁺, N⁺₂, NO⁺ and O⁺₂). The temperature equation is solved for three ion species (H⁺, He⁺ and O⁺) and for the electrons. Ion inertia is included in the ion momentum equation for motion along the geomagnetic field. This is important in modeling the topside ionosphere and plasmasphere where the plasma becomes collisionless. <br><br>SAMI3 includes 21 chemical reactions and radiative recombination, and uses a nonorthogonal, nonuniform, fixed grid for the magnetic latitude range +/- 89 degrees.. <br><br><b>Drivers</b><br>Neutral composition, temperature, and winds: NRLMSISE00 (Picone et al., 2002) and HWM14 (Drob et al., 2015). <br>Solar radiation: Flare Irradiance Spectral Model version 2 (FISM v2)<br>Magnetic field: Richmond apex model [Richmond, 1995]. <br>Neutral wind dynamo electric field: Determined from the solution of a 2D potential equation [Huba et at., 2008]. <br>For the SAMI3/Weimer configuration: High latitude electric field: calculated from the empirical Weimer model for the potential. <br>For the SAMI3/AMPERE configuration: High latitude electric field: calculated using the Magnetosphere-Ionosphere Coupling solver (MIX) developed by Merkin and Lyon (2010). The inputs to MIX are SAMI3's internal conductances, plus field-aligned current observations from Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE), derived from the 66+ satellite Iridium NEXT constellation's engineering magnetometer data. This potential calculation is described in Chartier et al (2022). <br><br>For ease of use, SAMI3 output is remapped to a regular grid using the Earth System Modeling Framework by Hill et al (2004)</p>
SAMI3 data in netCDF format (2019-Mar-25)
<p>SAMI3 (Sami3 is Also a Model of the Ionosphere) is a seamless, three-dimensional, physics-based model of the ionosphere (Huba et al, 2008). It is based on SAMI2, a two-dimensional model of the ionosphere (Huba et al., 2000). <br><br>SAMI3 models the plasma and chemical evolution of seven ion species (H⁺, He⁺, N⁺, O⁺, N⁺₂, NO⁺ and O⁺₂). The temperature equation is solved for three ion species (H⁺, He⁺ and O⁺) and for the electrons. Ion inertia is included in the ion momentum equation for motion along the geomagnetic field. This is important in modeling the topside ionosphere and plasmasphere where the plasma becomes collisionless. <br><br>SAMI3 includes 21 chemical reactions and radiative recombination, and uses a nonorthogonal, nonuniform, fixed grid for the magnetic latitude range +/- 89 degrees.. <br><br><b>Drivers</b><br>Neutral composition, temperature, and winds: NRLMSISE00 (Picone et al., 2002) and HWM14 (Drob et al., 2015). <br>Solar radiation: Flare Irradiance Spectral Model version 2 (FISM v2)<br>Magnetic field: Richmond apex model [Richmond, 1995]. <br>Neutral wind dynamo electric field: Determined from the solution of a 2D potential equation [Huba et at., 2008]. <br>For the SAMI3/Weimer configuration: High latitude electric field: calculated from the empirical Weimer model for the potential. <br>For the SAMI3/AMPERE configuration: High latitude electric field: calculated using the Magnetosphere-Ionosphere Coupling solver (MIX) developed by Merkin and Lyon (2010). The inputs to MIX are SAMI3's internal conductances, plus field-aligned current observations from Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE), derived from the 66+ satellite Iridium NEXT constellation's engineering magnetometer data. This potential calculation is described in Chartier et al (2022). <br><br>For ease of use, SAMI3 output is remapped to a regular grid using the Earth System Modeling Framework by Hill et al (2004)</p>
SAMI3 data in netCDF format (2019-Mar-23)
<p>SAMI3 (Sami3 is Also a Model of the Ionosphere) is a seamless, three-dimensional, physics-based model of the ionosphere (Huba et al, 2008). It is based on SAMI2, a two-dimensional model of the ionosphere (Huba et al., 2000). <br><br>SAMI3 models the plasma and chemical evolution of seven ion species (H⁺, He⁺, N⁺, O⁺, N⁺₂, NO⁺ and O⁺₂). The temperature equation is solved for three ion species (H⁺, He⁺ and O⁺) and for the electrons. Ion inertia is included in the ion momentum equation for motion along the geomagnetic field. This is important in modeling the topside ionosphere and plasmasphere where the plasma becomes collisionless. <br><br>SAMI3 includes 21 chemical reactions and radiative recombination, and uses a nonorthogonal, nonuniform, fixed grid for the magnetic latitude range +/- 89 degrees.. <br><br><b>Drivers</b><br>Neutral composition, temperature, and winds: NRLMSISE00 (Picone et al., 2002) and HWM14 (Drob et al., 2015). <br>Solar radiation: Flare Irradiance Spectral Model version 2 (FISM v2)<br>Magnetic field: Richmond apex model [Richmond, 1995]. <br>Neutral wind dynamo electric field: Determined from the solution of a 2D potential equation [Huba et at., 2008]. <br>For the SAMI3/Weimer configuration: High latitude electric field: calculated from the empirical Weimer model for the potential. <br>For the SAMI3/AMPERE configuration: High latitude electric field: calculated using the Magnetosphere-Ionosphere Coupling solver (MIX) developed by Merkin and Lyon (2010). The inputs to MIX are SAMI3's internal conductances, plus field-aligned current observations from Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE), derived from the 66+ satellite Iridium NEXT constellation's engineering magnetometer data. This potential calculation is described in Chartier et al (2022). <br><br>For ease of use, SAMI3 output is remapped to a regular grid using the Earth System Modeling Framework by Hill et al (2004)</p>
SAMI3 data in netCDF format (2019-Mar-24)
<p>SAMI3 (Sami3 is Also a Model of the Ionosphere) is a seamless, three-dimensional, physics-based model of the ionosphere (Huba et al, 2008). It is based on SAMI2, a two-dimensional model of the ionosphere (Huba et al., 2000). <br><br>SAMI3 models the plasma and chemical evolution of seven ion species (H⁺, He⁺, N⁺, O⁺, N⁺₂, NO⁺ and O⁺₂). The temperature equation is solved for three ion species (H⁺, He⁺ and O⁺) and for the electrons. Ion inertia is included in the ion momentum equation for motion along the geomagnetic field. This is important in modeling the topside ionosphere and plasmasphere where the plasma becomes collisionless. <br><br>SAMI3 includes 21 chemical reactions and radiative recombination, and uses a nonorthogonal, nonuniform, fixed grid for the magnetic latitude range +/- 89 degrees.. <br><br><b>Drivers</b><br>Neutral composition, temperature, and winds: NRLMSISE00 (Picone et al., 2002) and HWM14 (Drob et al., 2015). <br>Solar radiation: Flare Irradiance Spectral Model version 2 (FISM v2)<br>Magnetic field: Richmond apex model [Richmond, 1995]. <br>Neutral wind dynamo electric field: Determined from the solution of a 2D potential equation [Huba et at., 2008]. <br>For the SAMI3/Weimer configuration: High latitude electric field: calculated from the empirical Weimer model for the potential. <br>For the SAMI3/AMPERE configuration: High latitude electric field: calculated using the Magnetosphere-Ionosphere Coupling solver (MIX) developed by Merkin and Lyon (2010). The inputs to MIX are SAMI3's internal conductances, plus field-aligned current observations from Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE), derived from the 66+ satellite Iridium NEXT constellation's engineering magnetometer data. This potential calculation is described in Chartier et al (2022). <br><br>For ease of use, SAMI3 output is remapped to a regular grid using the Earth System Modeling Framework by Hill et al (2004)</p>
SAMI3 data in netCDF format (2019-Mar-22)
<p>SAMI3 (Sami3 is Also a Model of the Ionosphere) is a seamless, three-dimensional, physics-based model of the ionosphere (Huba et al, 2008). It is based on SAMI2, a two-dimensional model of the ionosphere (Huba et al., 2000). <br><br>SAMI3 models the plasma and chemical evolution of seven ion species (H⁺, He⁺, N⁺, O⁺, N⁺₂, NO⁺ and O⁺₂). The temperature equation is solved for three ion species (H⁺, He⁺ and O⁺) and for the electrons. Ion inertia is included in the ion momentum equation for motion along the geomagnetic field. This is important in modeling the topside ionosphere and plasmasphere where the plasma becomes collisionless. <br><br>SAMI3 includes 21 chemical reactions and radiative recombination, and uses a nonorthogonal, nonuniform, fixed grid for the magnetic latitude range +/- 89 degrees.. <br><br><b>Drivers</b><br>Neutral composition, temperature, and winds: NRLMSISE00 (Picone et al., 2002) and HWM14 (Drob et al., 2015). <br>Solar radiation: Flare Irradiance Spectral Model version 2 (FISM v2)<br>Magnetic field: Richmond apex model [Richmond, 1995]. <br>Neutral wind dynamo electric field: Determined from the solution of a 2D potential equation [Huba et at., 2008]. <br>For the SAMI3/Weimer configuration: High latitude electric field: calculated from the empirical Weimer model for the potential. <br>For the SAMI3/AMPERE configuration: High latitude electric field: calculated using the Magnetosphere-Ionosphere Coupling solver (MIX) developed by Merkin and Lyon (2010). The inputs to MIX are SAMI3's internal conductances, plus field-aligned current observations from Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE), derived from the 66+ satellite Iridium NEXT constellation's engineering magnetometer data. This potential calculation is described in Chartier et al (2022). <br><br>For ease of use, SAMI3 output is remapped to a regular grid using the Earth System Modeling Framework by Hill et al (2004)</p>
SAMI3 data in netCDF format (2019-Mar-27)
<p>SAMI3 (Sami3 is Also a Model of the Ionosphere) is a seamless, three-dimensional, physics-based model of the ionosphere (Huba et al, 2008). It is based on SAMI2, a two-dimensional model of the ionosphere (Huba et al., 2000). <br><br>SAMI3 models the plasma and chemical evolution of seven ion species (H⁺, He⁺, N⁺, O⁺, N⁺₂, NO⁺ and O⁺₂). The temperature equation is solved for three ion species (H⁺, He⁺ and O⁺) and for the electrons. Ion inertia is included in the ion momentum equation for motion along the geomagnetic field. This is important in modeling the topside ionosphere and plasmasphere where the plasma becomes collisionless. <br><br>SAMI3 includes 21 chemical reactions and radiative recombination, and uses a nonorthogonal, nonuniform, fixed grid for the magnetic latitude range +/- 89 degrees.. <br><br><b>Drivers</b><br>Neutral composition, temperature, and winds: NRLMSISE00 (Picone et al., 2002) and HWM14 (Drob et al., 2015). <br>Solar radiation: Flare Irradiance Spectral Model version 2 (FISM v2)<br>Magnetic field: Richmond apex model [Richmond, 1995]. <br>Neutral wind dynamo electric field: Determined from the solution of a 2D potential equation [Huba et at., 2008]. <br>For the SAMI3/Weimer configuration: High latitude electric field: calculated from the empirical Weimer model for the potential. <br>For the SAMI3/AMPERE configuration: High latitude electric field: calculated using the Magnetosphere-Ionosphere Coupling solver (MIX) developed by Merkin and Lyon (2010). The inputs to MIX are SAMI3's internal conductances, plus field-aligned current observations from Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE), derived from the 66+ satellite Iridium NEXT constellation's engineering magnetometer data. This potential calculation is described in Chartier et al (2022). <br><br>For ease of use, SAMI3 output is remapped to a regular grid using the Earth System Modeling Framework by Hill et al (2004)</p>
SAMI3 data in netCDF format (2019-Mar-20)
<p>SAMI3 (Sami3 is Also a Model of the Ionosphere) is a seamless, three-dimensional, physics-based model of the ionosphere (Huba et al, 2008). It is based on SAMI2, a two-dimensional model of the ionosphere (Huba et al., 2000). <br><br>SAMI3 models the plasma and chemical evolution of seven ion species (H⁺, He⁺, N⁺, O⁺, N⁺₂, NO⁺ and O⁺₂). The temperature equation is solved for three ion species (H⁺, He⁺ and O⁺) and for the electrons. Ion inertia is included in the ion momentum equation for motion along the geomagnetic field. This is important in modeling the topside ionosphere and plasmasphere where the plasma becomes collisionless. <br><br>SAMI3 includes 21 chemical reactions and radiative recombination, and uses a nonorthogonal, nonuniform, fixed grid for the magnetic latitude range +/- 89 degrees.. <br><br><b>Drivers</b><br>Neutral composition, temperature, and winds: NRLMSISE00 (Picone et al., 2002) and HWM14 (Drob et al., 2015). <br>Solar radiation: Flare Irradiance Spectral Model version 2 (FISM v2)<br>Magnetic field: Richmond apex model [Richmond, 1995]. <br>Neutral wind dynamo electric field: Determined from the solution of a 2D potential equation [Huba et at., 2008]. <br>For the SAMI3/Weimer configuration: High latitude electric field: calculated from the empirical Weimer model for the potential. <br>For the SAMI3/AMPERE configuration: High latitude electric field: calculated using the Magnetosphere-Ionosphere Coupling solver (MIX) developed by Merkin and Lyon (2010). The inputs to MIX are SAMI3's internal conductances, plus field-aligned current observations from Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE), derived from the 66+ satellite Iridium NEXT constellation's engineering magnetometer data. This potential calculation is described in Chartier et al (2022). <br><br>For ease of use, SAMI3 output is remapped to a regular grid using the Earth System Modeling Framework by Hill et al (2004)</p>
SAMI3 data in netCDF format (2019-Mar-19)
<p>SAMI3 (Sami3 is Also a Model of the Ionosphere) is a seamless, three-dimensional, physics-based model of the ionosphere (Huba et al, 2008). It is based on SAMI2, a two-dimensional model of the ionosphere (Huba et al., 2000). <br><br>SAMI3 models the plasma and chemical evolution of seven ion species (H⁺, He⁺, N⁺, O⁺, N⁺₂, NO⁺ and O⁺₂). The temperature equation is solved for three ion species (H⁺, He⁺ and O⁺) and for the electrons. Ion inertia is included in the ion momentum equation for motion along the geomagnetic field. This is important in modeling the topside ionosphere and plasmasphere where the plasma becomes collisionless. <br><br>SAMI3 includes 21 chemical reactions and radiative recombination, and uses a nonorthogonal, nonuniform, fixed grid for the magnetic latitude range +/- 89 degrees.. <br><br><b>Drivers</b><br>Neutral composition, temperature, and winds: NRLMSISE00 (Picone et al., 2002) and HWM14 (Drob et al., 2015). <br>Solar radiation: Flare Irradiance Spectral Model version 2 (FISM v2)<br>Magnetic field: Richmond apex model [Richmond, 1995]. <br>Neutral wind dynamo electric field: Determined from the solution of a 2D potential equation [Huba et at., 2008]. <br>For the SAMI3/Weimer configuration: High latitude electric field: calculated from the empirical Weimer model for the potential. <br>For the SAMI3/AMPERE configuration: High latitude electric field: calculated using the Magnetosphere-Ionosphere Coupling solver (MIX) developed by Merkin and Lyon (2010). The inputs to MIX are SAMI3's internal conductances, plus field-aligned current observations from Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE), derived from the 66+ satellite Iridium NEXT constellation's engineering magnetometer data. This potential calculation is described in Chartier et al (2022). <br><br>For ease of use, SAMI3 output is remapped to a regular grid using the Earth System Modeling Framework by Hill et al (2004)</p>
SAMI3 data in netCDF format (2019-Mar-18)
<p>SAMI3 (Sami3 is Also a Model of the Ionosphere) is a seamless, three-dimensional, physics-based model of the ionosphere (Huba et al, 2008). It is based on SAMI2, a two-dimensional model of the ionosphere (Huba et al., 2000). <br><br>SAMI3 models the plasma and chemical evolution of seven ion species (H⁺, He⁺, N⁺, O⁺, N⁺₂, NO⁺ and O⁺₂). The temperature equation is solved for three ion species (H⁺, He⁺ and O⁺) and for the electrons. Ion inertia is included in the ion momentum equation for motion along the geomagnetic field. This is important in modeling the topside ionosphere and plasmasphere where the plasma becomes collisionless. <br><br>SAMI3 includes 21 chemical reactions and radiative recombination, and uses a nonorthogonal, nonuniform, fixed grid for the magnetic latitude range +/- 89 degrees.. <br><br><b>Drivers</b><br>Neutral composition, temperature, and winds: NRLMSISE00 (Picone et al., 2002) and HWM14 (Drob et al., 2015). <br>Solar radiation: Flare Irradiance Spectral Model version 2 (FISM v2)<br>Magnetic field: Richmond apex model [Richmond, 1995]. <br>Neutral wind dynamo electric field: Determined from the solution of a 2D potential equation [Huba et at., 2008]. <br>For the SAMI3/Weimer configuration: High latitude electric field: calculated from the empirical Weimer model for the potential. <br>For the SAMI3/AMPERE configuration: High latitude electric field: calculated using the Magnetosphere-Ionosphere Coupling solver (MIX) developed by Merkin and Lyon (2010). The inputs to MIX are SAMI3's internal conductances, plus field-aligned current observations from Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE), derived from the 66+ satellite Iridium NEXT constellation's engineering magnetometer data. This potential calculation is described in Chartier et al (2022). <br><br>For ease of use, SAMI3 output is remapped to a regular grid using the Earth System Modeling Framework by Hill et al (2004)</p>
SAMI3 data in netCDF format (2019-Mar-17)
<p>SAMI3 (Sami3 is Also a Model of the Ionosphere) is a seamless, three-dimensional, physics-based model of the ionosphere (Huba et al, 2008). It is based on SAMI2, a two-dimensional model of the ionosphere (Huba et al., 2000). <br><br>SAMI3 models the plasma and chemical evolution of seven ion species (H⁺, He⁺, N⁺, O⁺, N⁺₂, NO⁺ and O⁺₂). The temperature equation is solved for three ion species (H⁺, He⁺ and O⁺) and for the electrons. Ion inertia is included in the ion momentum equation for motion along the geomagnetic field. This is important in modeling the topside ionosphere and plasmasphere where the plasma becomes collisionless. <br><br>SAMI3 includes 21 chemical reactions and radiative recombination, and uses a nonorthogonal, nonuniform, fixed grid for the magnetic latitude range +/- 89 degrees.. <br><br><b>Drivers</b><br>Neutral composition, temperature, and winds: NRLMSISE00 (Picone et al., 2002) and HWM14 (Drob et al., 2015). <br>Solar radiation: Flare Irradiance Spectral Model version 2 (FISM v2)<br>Magnetic field: Richmond apex model [Richmond, 1995]. <br>Neutral wind dynamo electric field: Determined from the solution of a 2D potential equation [Huba et at., 2008]. <br>For the SAMI3/Weimer configuration: High latitude electric field: calculated from the empirical Weimer model for the potential. <br>For the SAMI3/AMPERE configuration: High latitude electric field: calculated using the Magnetosphere-Ionosphere Coupling solver (MIX) developed by Merkin and Lyon (2010). The inputs to MIX are SAMI3's internal conductances, plus field-aligned current observations from Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE), derived from the 66+ satellite Iridium NEXT constellation's engineering magnetometer data. This potential calculation is described in Chartier et al (2022). <br><br>For ease of use, SAMI3 output is remapped to a regular grid using the Earth System Modeling Framework by Hill et al (2004)</p>
SAMI3 data in netCDF format (2019-Mar-21)
<p>SAMI3 (Sami3 is Also a Model of the Ionosphere) is a seamless, three-dimensional, physics-based model of the ionosphere (Huba et al, 2008). It is based on SAMI2, a two-dimensional model of the ionosphere (Huba et al., 2000). <br><br>SAMI3 models the plasma and chemical evolution of seven ion species (H⁺, He⁺, N⁺, O⁺, N⁺₂, NO⁺ and O⁺₂). The temperature equation is solved for three ion species (H⁺, He⁺ and O⁺) and for the electrons. Ion inertia is included in the ion momentum equation for motion along the geomagnetic field. This is important in modeling the topside ionosphere and plasmasphere where the plasma becomes collisionless. <br><br>SAMI3 includes 21 chemical reactions and radiative recombination, and uses a nonorthogonal, nonuniform, fixed grid for the magnetic latitude range +/- 89 degrees.. <br><br><b>Drivers</b><br>Neutral composition, temperature, and winds: NRLMSISE00 (Picone et al., 2002) and HWM14 (Drob et al., 2015). <br>Solar radiation: Flare Irradiance Spectral Model version 2 (FISM v2)<br>Magnetic field: Richmond apex model [Richmond, 1995]. <br>Neutral wind dynamo electric field: Determined from the solution of a 2D potential equation [Huba et at., 2008]. <br>For the SAMI3/Weimer configuration: High latitude electric field: calculated from the empirical Weimer model for the potential. <br>For the SAMI3/AMPERE configuration: High latitude electric field: calculated using the Magnetosphere-Ionosphere Coupling solver (MIX) developed by Merkin and Lyon (2010). The inputs to MIX are SAMI3's internal conductances, plus field-aligned current observations from Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE), derived from the 66+ satellite Iridium NEXT constellation's engineering magnetometer data. This potential calculation is described in Chartier et al (2022). <br><br>For ease of use, SAMI3 output is remapped to a regular grid using the Earth System Modeling Framework by Hill et al (2004)</p>
SAMI3 data in netCDF format (2019-Mar-26)
<p>SAMI3 (Sami3 is Also a Model of the Ionosphere) is a seamless, three-dimensional, physics-based model of the ionosphere (Huba et al, 2008). It is based on SAMI2, a two-dimensional model of the ionosphere (Huba et al., 2000). <br><br>SAMI3 models the plasma and chemical evolution of seven ion species (H⁺, He⁺, N⁺, O⁺, N⁺₂, NO⁺ and O⁺₂). The temperature equation is solved for three ion species (H⁺, He⁺ and O⁺) and for the electrons. Ion inertia is included in the ion momentum equation for motion along the geomagnetic field. This is important in modeling the topside ionosphere and plasmasphere where the plasma becomes collisionless. <br><br>SAMI3 includes 21 chemical reactions and radiative recombination, and uses a nonorthogonal, nonuniform, fixed grid for the magnetic latitude range +/- 89 degrees.. <br><br><b>Drivers</b><br>Neutral composition, temperature, and winds: NRLMSISE00 (Picone et al., 2002) and HWM14 (Drob et al., 2015). <br>Solar radiation: Flare Irradiance Spectral Model version 2 (FISM v2)<br>Magnetic field: Richmond apex model [Richmond, 1995]. <br>Neutral wind dynamo electric field: Determined from the solution of a 2D potential equation [Huba et at., 2008]. <br>For the SAMI3/Weimer configuration: High latitude electric field: calculated from the empirical Weimer model for the potential. <br>For the SAMI3/AMPERE configuration: High latitude electric field: calculated using the Magnetosphere-Ionosphere Coupling solver (MIX) developed by Merkin and Lyon (2010). The inputs to MIX are SAMI3's internal conductances, plus field-aligned current observations from Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE), derived from the 66+ satellite Iridium NEXT constellation's engineering magnetometer data. This potential calculation is described in Chartier et al (2022). <br><br>For ease of use, SAMI3 output is remapped to a regular grid using the Earth System Modeling Framework by Hill et al (2004)</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.