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79 results for “genetic crosses”
Data from: Hybrid crosses and the genetic basis of interspecific divergence in lifespan in Pristionchus nematodes
Characterizing the genetic basis of among-species variation in lifespan is a major goal of evolutionary gerontology research, but the very feature that defines separate species—the inability to interbreed—makes achieving this goal impractical, if not impossible, for most taxa. Pristionchus nematodes provide an intriguing system for tackling this problem, as female lifespan varies among species that can be crossed to form viable (though infertile) hybrids. By conducting reciprocal crosses among three species—two dioecious (long-lived P. exspectatus and short-lived P. arcanus) and one androdioecious (short-lived P. pacificus)—we found that female lifespan was long for all hybrids, consistent with the hypothesis that the relatively short lifespans seen for P. pacificus hermaphrodites and P. arcanus females are caused by independent, recessive alleles that are masked in hybrid genomes. Cross direction had a small effect on survivorship for crosses involving P. exspectatus, indicating that nuclear-mitochondrial interactions may also influence Pristionchus longevity. Our findings suggest that long lifespan in P. exspectatus reflects the realization of an ancestral potential for extended longevity in the P. pacificus species complex. This work demonstrates the utility of interspecific hybrids for ageing research and provides a foundation for future work on the genetic architecture of interspecific lifespan variation.
Data from: Cis- and trans-acting genetic factors contribute to heterogeneity in the rate of crossing over between the Drosophila simulans clade species
In the genus Drosophila, variation in recombination rates has been found within and between species. Genetic variation for both cis- and trans-acting factors has been shown to affect recombination rates within species, but little is known about the genetic factors that affect differences between species. Here we estimate rates of crossing over for seven segments that tile across the euchromatic length of the X chromosome in the genetic backgrounds of three closely related Drosophila species. We first generated a set of Drosophila mauritiana lines each having two semi-dominant visible markers on the X chromosome and then introgressed these doubly marked segments into the genetic backgrounds of its sibling species, D. simulans and D. sechellia. Using these 21 lines (7 segments, 3 genetic backgrounds) we tested whether recombination rates within the doubly marked intervals differed depending on genetic background. We find significant heterogeneity among intervals and among species backgrounds. Our results suggest that a combination of both cis- and trans-acting factors have evolved among the three D. simulans clade species and interact to affect recombination rate.
Data from: Cross-sex genetic correlations and the evolution of sex-specific local adaptation: insights from classical trait clines in Drosophila melanogaster
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Data from: Hybrid crosses and the genetic basis of interspecific divergence in lifespan in Pristionchus nematodes
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Data from: QuLinePlus: extending plant breeding strategy and genetic model simulation to cross-pollinated populations – case studies in forage breeding
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Data from: Cis- and trans-acting genetic factors contribute to heterogeneity in the rate of crossing over between the Drosophila simulans clade species
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Data from: Superiority of extra-pair offspring: maternal but not genetic effects as revealed by a mixed cross-fostering design
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Data from: Genetic diversity and cross-species transmission of kobuviruses in Vietnam
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Data from: Genetic structure of phenotypic robustness in the Collaborative Cross mouse diallel panel
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A quantitative genetics approach to cross-validate lab- versus field-based behavior in novel environments
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Data from: Cross-sex genetic covariances limit the evolvability of wing-shape within and among species of Drosophila
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Cross-Species Comparison Identifies Proneural specific patterns of genetic alterations in Glioblastoma
GEO Series GSE36940. Mus musculus. 31 samples. Type: Genome variation profiling by genome tiling array.
Hepatic transcriptional profiles reveals the role of diet and genetic variation on cardiometabolic traits in progenitor strains of the Collaborative Cross mouse
GEO Series GSE159992. Mus musculus. 48 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic profiling of non-alcoholic fatty liver induced by a high-fat and high-sucrose diet in the genetically diverse Collaborative Cross mice.
GEO Series GSE149863. Mus musculus. 120 samples. Type: Expression profiling by high throughput sequencing.
Evolutionary potential, cross-stress behavior and the genetic basis of acquired stress resistance in Escherichia coli
GEO Series GSE39926. Escherichia coli. 6 samples. Type: Expression profiling by high throughput sequencing.
Plant breeding involving genetic engineering does not result in unacceptable unintended effects in rice relative to conventional cross-breeding
GEO Series GSE152572. Oryza sativa. 39 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic analysis reveals genetic factors underlying impaired symbiotic nitrogen fixation in lines derived from crosses between cultivated peanut (Arachis hypogaea L.) and its wild ancestors
GEO Series GSE289879. Arachis hypogaea. 27 samples. Type: Expression profiling by high throughput sequencing.
Dissecting the Effect of Genetic Variation on the Hepatic Expression of Drug Disposition Genes across the Collaborative Cross Mouse Strains
GEO Series GSE77715. Mus musculus. 55 samples. Type: Expression profiling by high throughput sequencing.
Genetic basis of thermal nociceptive sensitivity and brain weight in a BALB/c reduced complexity cross: BALB/cJ vs BALB/cByJ Spinal Cord RNAseq
GEO Series GSE196302. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Genetic landscape and functional exploration of kidney cancer predisposition causality in cross-ancestral populations
GEO Series GSE279473. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.