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Fig. 4 in Palaeohistology helps reveal taxonomic variability in exceptionally large temnospondyl humeri from the Upper Triassic of Krasiejów, SW Poland
Fig. 4. Microanatomy of the humeri of temnospondylian amphibians from Triassic of Krasiejów (Poland), Norian (A–D) and Bonenburg (Germany), Rhaetian (E). A, C. Capitosaurid Cyclotosaurus intermedius Sulej and Majer, 2005. A. UOBS 02116. C. UOBS 00574 (histotype II sensu Teschner et al. 2018). B, D. Trematosaurid Metoposaurus krasiejowensis (Sulej, 2002). B. UOBS 02431. D. UOPB 00109 (histotype I sensu Teschner et al. 2018). E. cf. Cyclotosaurus, LWL-MFN P 64371. Black, bone; white, pores; green, diagenetic cracks.
Supplementary Materials of "Elementary mathematics helps to shed light on the transpiration budget under water stress"
<p>This directory contains the Jupyter notebook used to do complete analysis from our paper "Elementary mathematics sheds light on the transpiration budget under water stress" submitted to the Ecohydrology Journal at the Special Issues "ECOHYDROLOGY OF INLAND AND COASTAL WATERS in honor of Ignacio Rodriguez-Iturbe".</p> <p>These materials are referenced in the main text and supplemental text of the publication. The purpose of this repository is to facilitate replication of our analysis by any interested parties. </p> <p>Specifically, this directory contains ten files:</p> <ul> <li>From 0 to 5, Jupyter Notebook prepared and used for the analysis (please execute the notebooks in numerical sequence). </li> <li>"Table_S1.xlsx" Data From: Kröber, W., H. Heklau, and H. Bruelheide. 2015. “Leaf Morphology of 40 Evergreen and Deciduous Broadleaved Subtropical Tree Species and Relationships to Functional Ecophysiological Traits.” Plant Biology 17 (2): 373–83. <a href="https://doi.org/10.1111/plb.12250"><span>https://doi.org/10.1111/plb.12250</span></a>.</li> <li>"Richards_VG.csv" contains Van Genuchten Parameters for various soils.</li> <li>"The_Rosetta_Stone_of_the_Darcy_Buckingham_law.pdf" addresses the challenge of converting water flux units between Darcy-like soil and plant descriptions, where hydrologists use "head" units (meters) and plant physiologists use pressure potential (MPa). The aim is to clarify and perform the necessary unit conversions, with detailed explanations available in the relevant section on <a href="https://abouthydrology.blogspot.com/2022/10/my-water-management-in-agricolture.html"><span>this webpage</span></a>.</li> </ul>
Fig. 10 in Can artificial retreat sites help frogs recover after severe habitat devastation? Insights on the use of "coqui houses" after Hurricane Maria in Puerto Rico
Fig. 10. Comparison of the relative abundance, measured as the number of adult Eleutherodactylus coqui observed per sampling night in the experimental transect where artificial coqui houses were made available, versus the control.
Fig. 6 in Can artificial retreat sites help frogs recover after severe habitat devastation? Insights on the use of "coqui houses" after Hurricane Maria in Puerto Rico
Fig. 6. Variation in operative temperatures measured by frog agar models in typical forest microhabitats after Hurricane Maria, showing a significant decrease during the cool-dry season (in blue) during midday (A), and nighttime (B).
Fig. 8 in Can artificial retreat sites help frogs recover after severe habitat devastation? Insights on the use of "coqui houses" after Hurricane Maria in Puerto Rico
Fig. 8. Bar graphs showing coqui house occupancy rate by Eleutherodactylus coqui during the length of this study by daytime (A), and by nighttime (B) surveys. The shaded area in (A) denotes sampling in months during the cool-dry season.
Fig. 7 in Can artificial retreat sites help frogs recover after severe habitat devastation? Insights on the use of "coqui houses" after Hurricane Maria in Puerto Rico
Fig. 7. Box plots showing variation in forest microhabitat temperature by day (A) and night (B) during the cool-dry season (February) of 2015 (a non-hurricane year), and in 2019, 17 months after Hurricane Maria hit Puerto Rico.
Fig. 5 in Can artificial retreat sites help frogs recover after severe habitat devastation? Insights on the use of "coqui houses" after Hurricane Maria in Puerto Rico
Fig. 5. Drastic changes in temperature at the transects in the Palo Colorado forest of El Yunque as a consequence of Hurricane Maria. (A) Ambient temperatures registered by HOBO data logger in the forest understory before, during, and shortly after Hurricane Maria. (B–C) Box plots showing variation in forest microhabitat temperature by day and at night during the month of September in 2015 (a non-hurricane year), and in 2017, the year that Hurricane Maria hit Puerto Rico.
Fig. 2 in Can artificial retreat sites help frogs recover after severe habitat devastation? Insights on the use of "coqui houses" after Hurricane Maria in Puerto Rico
Fig. 2. Change in forest structure in the Palo Colorado forest transect (El Yunque) due to Hurricane Maria and corresponding damage/recovery stages according to Table 1. (A) Before the hurricane. (B) Same site after the hurricane, stage 1. (C) Moderate recuperation, stage 3. (D–E) Canopy dominated by Sierra Palm fronds showing signs of further recuperation of original understory vegetation, stage 4.
Fig. 9 in Can artificial retreat sites help frogs recover after severe habitat devastation? Insights on the use of "coqui houses" after Hurricane Maria in Puerto Rico
Fig. 9. Different uses ascribed to the two types of artificial habitats (=coqui houses) placed in the forest. (A) Coqui frog using bamboo house as retreat site during the day. (B) Bamboo house used as nesting site with a double clutch. Note that eggs are observed but the guarding male jumped away as the photo was taken. (C) PVC house used by a coqui as a nocturnal perching site. (D) PVC house used by a coqui as a calling site during the night.
Fig. 1 in Can artificial retreat sites help frogs recover after severe habitat devastation? Insights on the use of "coqui houses" after Hurricane Maria in Puerto Rico
Fig. 1. Map showing the location of El Yunque National Forest in Puerto Rico, and the location of the study transects.
Biodiversity on public lands: how citizen science can help
<p>These are the code and data files for "Biodiversity on public lands: how citizen science can help". Included in this are the following:</p> <p>1. taxataxi_opt_multiple_reports.R which is code for running multiple iNaturalist Bioblitz datasets with built in re-setting mechanisms for the various reports run.</p> <p>2. iNat_NPS_comparison_code.R which is code for running a single iNaturalist Bioblitz dataset. This is identical to (1) except for the re-setting mechanisms and some re-organization of parts of the code.</p> <p>3. synonym_links & taxonomic_units which are used in conjunction with (1) & (2) for the synonym identification.</p> <p>4. All_iNat3.csv is all of the iNaturalist entries used in the initial study named above.</p> <p>5. all_parks.csv contains all of the filtered data from the park units through (1) for the initial study named above.</p> <p>6. invasives_for_all_table1.R is code used in the initial study to identify introduced species.</p> <p>7. migration.R is code used in the initial study to identify previously unrecorded species that were recorded less than 50 times in BISON in the USA state that the park unit is located in.</p> <p>8. table3_all_parks.csv is the data used in the migration.R code for identifying these species.</p> <p>9.<span> <span><a href="../api/records/12571055/draft/files/query848species_result-categories_2024JUN27.xlsx/content" target="_blank" rel="noopener noreferrer">query848species_result-categories_2024JUN27.xlsx</a></span></span> is the manual checking of the unmatched species.</p> <p>10. i<span><a href="../api/records/12571055/draft/files/iNatSourceRecords-for-each-of-the-848unmatched-spp.xlsx/content" target="_blank" rel="noopener noreferrer">NatSourceRecords-for-each-of-the-848unmatched-spp.xlsx</a></span> is the unmatched species iNat records.</p>
Supplementary Material for "Can ZooMS help assess species abundance in highly fragmented bone assemblages? Integrating morphological and proteomic identifications for the calculation of an adjusted ZooMS-eNISP"
<p><span>Supplementary Material for the article "Can ZooMS help assess species abundance in highly fragmented bone assemblages? Integrating morphological and proteomic identifications for the calculation of an adjusted ZooMS-eNISP" by Discamps et al., published in Palaeoanthropology.</span></p> <p><span>SI#1 Cassenade dataset (morphological and ZooMS identifications, sizes, masses, etc.) in RDS format.</span></p> <p><span>SI#2 Cassenade dataset (morphological and ZooMS identifications, sizes, masses, etc.) in CSV format.</span></p> <p><span>SI#3 R script used for making the figures and statistical tests</span></p>
Figure 2 in Environmental DNA as a tool to help inform zebra mussel, Dreissena polymorpha, management in inland lakes
Figure 2. The mean number of cycles needed to detect DNA of zebra mussels from water samples collected at the surface, mid-column and bottom of Lake Minnetonka directly above a known zebra mussel population. A lower number of cycles indicates a greater amount of DNA. Bars represent the 95% confidence intervals.
Figure 3 in Environmental DNA as a tool to help inform zebra mussel, Dreissena polymorpha, management in inland lakes
Figure 3. Structural Equation Model for zebra mussels in two lakes near Alexandria, Minnesota: Lake Le Homme Dieu (A) and Maple Lake (B). Nodes are environmental DNA copy numbers of zebra mussel DNA (eDNA), habitat, depth, lake and ash-free dry weight (AFDW). AFDW is log(AFDW + 0.1). eDNA is log(copy number eDNA + 0.1). Numbers next to a line between two nodes represents the correlation between the two nodes. The r2 values in boxes correspond % variance of dependent variable explained by the independent variable. Values with an asterisk (*) indicate significant correlation between nodes. Our significance level was established at α ≤ 0.05.
Figure 3 in Does silicon help to alleviate water deficit stress and in the recovery of Dipteryx alata seedlings?
Figure 3. Potential quantum efficiency of photosystem II - F V/FM (a and d), absorbed energy conversion efficiency - F V/F (b and e), basal 0 quantum production of non-photochemical processes - F 0 /FM (c), maximum chlorophyll-a fluorescence - FM (f) and initial fluorescence - F 0 (g) in D. alata seedlings produced under different water regimes (I: Irrigated; II: combined intermittent irrigation without and with 0.75 and 1.50 Si) in different evaluation periods (T0: time zero; P0: photosynthesis close to zero; REC: recovery: END: end of evaluations). Capital letters compare water regimes within each assessment period (Tukey; p <0.05); Lowercase letters compare the evaluation periods within each water regime. (Tukey; p <0.05).
Figure 2. Photosynthetic rate – A in Does silicon help to alleviate water deficit stress and in the recovery of Dipteryx alata seedlings?
Figure 2. Photosynthetic rate – A (a), intracellular CO concentration – C (b), transpiration – E (c), stomatal conductance – gs (d), intrinsic 2 i Rubisco A/C i carboxylation efficiency (e) and efficiency of water use – WUE (f) in D. alata seedlings produced under different water regimes (I: Irrigated; II: combined intermittent irrigation without and with 0.75 and 1. Si) in different evaluation periods (T0: zero time; P0: photosynthesis close to zero; REC: recovery: END: end of evaluations). Capital letters compare water regimes within each assessment period (Tukey; p <0.05); Lowercase letters compare the evaluation periods within each water regime. (Tukey; p <0.05).
Figs. 1 and 2 in Studies of ambrosia beetles (Coleoptera: Curculionidae) in their native ranges help predict invasion impact
Figs. 1 and 2. Machilus (Lauraceae) trees in Huisun Forest, Taiwan, colonized by Xyleborus glabratus and Raffaelea lauricola. 1. Wood pieces excised from an injured but living tree. Staining is a reliable sign of R. lauricola establishment. 2. Injured trees showing symptoms of laurel wilt. Photographs by A. Black.
Fig. 1 in Helpful invaders: Can cane toads reduce the parasite burdens of native frogs?
Fig. 1. Effect of order of exposure and type of anuran species (native frog versus cane toad) on the number of lungworm (Rhabdias hylae) larvae taken up in one hour in experimental arenas. Graph displays average values ±1 S.E.
Fig. 2 in Helpful invaders: Can cane toads reduce the parasite burdens of native frogs?
Fig. 2. Effect of prior exposure to Rhabdias hylae on the subsequent establishment of another lungworm species (Rhabdias pseudosphaerocephala) in the lungs of cane toad metamorphs. Graph displays average values ±1 S.E.
Fig. 10 in Integrative taxonomy helps to revise systematics and questions the purported cosmopolitan nature of the type species within the genus Diaforobiotus (Eutardigrada: Richtersiusidae)
Fig. 10 Diaforobiotus svalbardicus sp. nov.: eggs seen in PCM: A, D, G focus on egg processes surface; B, E, H focus on egg processes midsections; C, F, I focus on egg surface between processes. Triples A–C, D–F, G–I represent three different eggs photographed with dif-
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.